Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8262249.1

Orthogroup ID

OG0005101

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 722

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8262249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 721 bp

atgtctcctgtggccggtgatccctttcctaccagatcacctcttcctaaacatcaacagggacagggtgtctcaactccaagcccgtaccttgcagaaagacagaggtcatcctccgtgaataagccacggaggcacttggacttggagccattccgctgctctgacgagaacaggcccgcccgccccgagtctcctctgccaccagatcaggcaaggaaacagcgtcctgtccctgtccctgtccctgtcccttttaaagagaacggaggaggcaaaccccaactgcatcatcttcctaaaacatgccctgggaaagtaagcaataatgcttttactacaccctcacgacctgacacacccatggtgactgctagtctcgataggacaagaatcagacagcggtcttccaattccaatgtcagtagtgccacagcagctactaagctcttgcaatctaccactgaggccacctccagtgacactaatcacactcaaatcaccagaaggtgtcttcctgatgttcgctcctccatgcccgaggccgatatgttgttgccgactgtttccagtagacaggcgaccgaaaaaagttgtaacaggcctaatgcaactgtcaatggcagcgatttttcaaaattttctgcttccccttgctcccgttctctcaacttgccactgtcaagctccgagcacttactcttccagtcaatcaaaggca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

240

Amino Acids

26.14

Weight (kDa)

10.15

Isoelectric Point (pI)

79.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44190 AT3G60000 AT3G60000
fragaria_vesca	FvH4_3g00020 FvH4_3g00020 FvH4_3g00020 FvH4_3g00020
malus_domestica	MD00G1208400.v1.1 MD00G1208500.v1.1 MD10G1342500.v1.1
prunus_persica	Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1
pyrus_communis	pycom10g29180
rosa_chinensis	RchiOBHm_Chr5g0000021
rosa_laevigata	RLG00000030833
rosa_multiflora	Rmu_co8262249.1_g000001 Rmu_sc0007644.1_g000013
rosa_roxburghii	Rroxscaffold_1G00076040
rosa_rugosa	Rorug04G0380400.1 Rorug04G0380500 Rorug04G0380600 Rorug04G0380700
rosa_samantha	Rh5AG000300 Rh5BG001500 Rh5CG000300 Rh5DG000300
rosa_wichuraiana	Rw5G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	574
AciI	CCGC	4 cut(s)	157, 180, 184, 403
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	638
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	636
AhdI	GACNNNNNGTC	2 cut(s)	68, 375
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	3 cut(s)	440, 448, 687
AluI	AGCT	3 cut(s)	440, 448, 687
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	4 cut(s)	9, 76, 198, 383
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	2 cut(s)	188, 539
AoxI	GGCC	5 cut(s)	12, 176, 468, 543, 602
ApeKI	GCWGC	3 cut(s)	159, 437, 624
ApoI	RAATTY	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	4 cut(s)	29, 30, 379, 493
AvaI	CYCGRG	2 cut(s)	188, 539
BbsI	GAAGAC	2 cut(s)	399, 506
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	3 cut(s)	146, 449, 636
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	4 cut(s)	9, 76, 198, 383
BfaI	CTAG	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	160, 438, 625
BlsI	GCNGC	3 cut(s)	161, 439, 626
Bme1390I	CCNGG	1 cut(s)	312
BmeRI	GACNNNNNGTC	2 cut(s)	68, 375
BmeT110I	CYCGRG	2 cut(s)	188, 539
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	298
BoxI	GACNNNNGTC	2 cut(s)	106, 403
BpiI	GAAGAC	2 cut(s)	399, 506
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	460
BsaJI	CCNNGG	5 cut(s)	128, 310, 311, 363, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	3 cut(s)	477, 570, 706
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	5 cut(s)	128, 310, 311, 363, 540
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	477, 570, 706
BseRI	GAGGAG	3 cut(s)	186, 285, 520
BseXI	GCAGC	3 cut(s)	146, 449, 636
Bsh1285I	CGRYCG	1 cut(s)	585
BshFI	GGCC	5 cut(s)	14, 178, 470, 545, 604
BsiEI	CGRYCG	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	696
BsiHKCI	CYCGRG	2 cut(s)	188, 539
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	5 cut(s)	75, 218, 224, 230, 236
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	4 cut(s)	9, 76, 198, 383
BsmFI	GGGAC	5 cut(s)	75, 218, 224, 230, 236
BsnI	GGCC	5 cut(s)	14, 178, 470, 545, 604
BsoBI	CYCGRG	2 cut(s)	188, 539
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp143I	GATC	3 cut(s)	19, 35, 208
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	4 cut(s)	157, 180, 184, 403
BspANI	GGCC	5 cut(s)	14, 178, 470, 545, 604
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	477, 570, 706
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	5 cut(s)	128, 310, 311, 363, 540
BssMI	GATC	3 cut(s)	19, 35, 208
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	565, 616, 681
Bst6I	CTCTTC	2 cut(s)	48, 707
BstC8I	GCNNGC	2 cut(s)	180, 184
BstDEI	CTNAG	2 cut(s)	444, 465
BstDSI	CCRYGG	2 cut(s)	128, 363
BstF5I	GGATG	1 cut(s)	110
BstKTI	GATC	3 cut(s)	22, 38, 211
BstMAI	GTCTC	4 cut(s)	9, 76, 198, 383
BstMBI	GATC	3 cut(s)	19, 35, 208
BstMCI	CGRYCG	1 cut(s)	585
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 437
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	309
BstPAI	GACNNNNGTC	2 cut(s)	106, 403
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	146, 449, 636
BstV2I	GAAGAC	2 cut(s)	399, 506
BsuRI	GGCC	5 cut(s)	14, 178, 470, 545, 604
BtgI	CCRYGG	2 cut(s)	128, 363
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	3 cut(s)	462, 484, 677
Cac8I	GCNNGC	2 cut(s)	180, 184
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	177
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	306, 364, 535
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	444, 465
DpnI	GATC	3 cut(s)	21, 37, 210
DpnII	GATC	3 cut(s)	19, 35, 208
DraI	TTTAAA	1 cut(s)	259
DriI	GACNNNNNGTC	2 cut(s)	68, 375
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	48, 707
Eam1105I	GACNNNNNGTC	2 cut(s)	68, 375
EarI	CTCTTC	2 cut(s)	48, 707
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	604
Eco88I	CYCGRG	2 cut(s)	188, 539
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	309, 367, 538
FaiI	YATR	4 cut(s)	307, 365, 536, 551
FaqI	GGGAC	5 cut(s)	75, 218, 224, 230, 236
FatI	CATG	3 cut(s)	305, 363, 534
FauI	CCCGC	2 cut(s)	187, 191
FblI	GTMKAC	1 cut(s)	574
Fnu4HI	GCNGC	3 cut(s)	160, 438, 625
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	3 cut(s)	160, 438, 625
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	3 cut(s)	160, 438, 625
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	5 cut(s)	14, 178, 470, 545, 604
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	309, 367, 538
HinfI	GANTC	2 cut(s)	191, 393
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	4 cut(s)	29, 30, 379, 493
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	3 cut(s)	166, 398, 691
Hpy188III	TCNNGA	3 cut(s)	348, 380, 518
Hpy8I	GTNNAC	1 cut(s)	575
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	3 cut(s)	565, 616, 681
HpyCH4V	TGCA	4 cut(s)	95, 289, 454, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 437
HpyF3I	CTNAG	2 cut(s)	444, 465
Hsp92II	CATG	3 cut(s)	309, 367, 538
Kzo9I	GATC	3 cut(s)	19, 35, 208
LmnI	GCTCC	4 cut(s)	148, 533, 662, 692
Lsp1109I	GCAGC	3 cut(s)	146, 449, 636
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	367, 479, 596
MalI	GATC	3 cut(s)	21, 37, 210
MboI	GATC	3 cut(s)	19, 35, 208
MboII	GAAGA	5 cut(s)	35, 287, 399, 506, 694
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	2 cut(s)	412, 638
MlyI	GAGTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	2 cut(s)	159, 403
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	133, 437
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	19, 35, 208
NlaIII	CATG	3 cut(s)	309, 367, 538
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	367, 479
NspI	RCATGY	1 cut(s)	309
PasI	CCCWGGG	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	161, 439, 626
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PshAI	GACNNNNGTC	2 cut(s)	106, 403
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	160, 438, 625
Sau3AI	GATC	3 cut(s)	19, 35, 208
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	696
SetI	ASST	9 cut(s)	43, 93, 110, 355, 442, 450, 476, 512, 689
SfaNI	GCATC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	412, 638
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	4 cut(s)	157, 180, 184, 403
SspMI	CTAG	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	565, 616, 681
TaqI	TCGA	1 cut(s)	381
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	2 cut(s)	412, 638
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	3 cut(s)	469, 484, 684
TseFI	GTSAC	2 cut(s)	367, 479
TseI	GCWGC	3 cut(s)	159, 437, 624
Tsp45I	GTSAC	2 cut(s)	367, 479
TspGWI	ACGGA	3 cut(s)	106, 145, 282
TspRI	CASTG	3 cut(s)	469, 484, 684
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	574
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.