Rorug04G0380500

Protein ENDOSPERM DEFECTIVE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005101
Physical Location & Seq
Reverse (-)
55113470 .. 55114587
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0380500.1

Sequence Viewer

Length: 870 bp
ATGTCGTCTGAAAAACTCAGACGACATAAAACAAAACTTATGTCTAAGCTTGTCAAAACCAACGATGAGATTGAGGCAGAGAAGATTGAGAAAGGAATACGCAACTCCATAATAGAGATTATAAAGAAAAGAGAAAAGAAAGCACTAATGAGTAGAGAAGATGAGAGCTTTGGGAATGATTTTCTTGGACTACTTTTAAGGGCTCATCATGATACCAATGACAAAGAGAGCATTTCAATGGATGGTTTAGTTGATGAGTGCAAGACTTTTTACTTTGCAGGACAAGAAACCACTAACAGTATGCTTGCTTGGACTGTCTTTCTTCTGGCACATTATACAGATTGGCAAGAGAGAGCAAGAAAGGAGGTCCTGCAAATATTTGGCAAACAAAATCCTGATCCAGATGGCCTTACCAAGCTTAAAACAATGAGTATGATCATCAACGAGTCACTAAGGTTATACCCTCCTGTTCTGTCCGTTGAGAGGAAAGTTAATTGGGAGGTTAAACTAGGAAAGCTCATTGTTCCTGCTAATGTTGAAGTGCACATTCCAACTCTAGCACTGCACCATGAGCCTCTATTCTGGGGTCAAGATGTACAACTTTTCAAGCCAGAACGATTCTCCGAGGGGGTTGCTAAAGCTACTAACAACAATATAGGTGCCTTCTTGCCCTTTGGAATGGGGCCTAGAATTTGTGCAGGCTTCAACTTTGCAACCATTGAAGCAAAGATTGCTCTGTCAATGATTCTACAGCGCTACAGCTTTCACCCTTTCCCCAGGTTATGTTCACTCTCCCCATCAATATCACACTATTCGCCCACAACATGGGGTTCAGGTGATGCTCCAGCCACTGTGAACTGTGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

289

Amino Acids

32.81

Weight (kDa)

8.25

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 16 - 259 2.2e-54 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 659
AccB7I CCANNNNNTGG 1 cut(s) 825
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 1 cut(s) 690
AfaI GTAC 1 cut(s) 597
AfeI AGCGCT 1 cut(s) 755
AfiI CCNNNNNNNGG 2 cut(s) 483, 825
AgsI TTSAA 5 cut(s) 237, 539, 607, 706, 722
AjnI CCWGG 1 cut(s) 776
AluBI AGCT 6 cut(s) 49, 168, 418, 517, 641, 762
AluI AGCT 6 cut(s) 49, 168, 418, 517, 641, 762
Alw21I GWGCWC 1 cut(s) 546
Alw44I GTGCAC 1 cut(s) 542
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 851
Aor51HI AGCGCT 1 cut(s) 755
AoxI GGCC 2 cut(s) 406, 683
ApaLI GTGCAC 1 cut(s) 542
ApoI RAATTY 1 cut(s) 690
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 1 cut(s) 756
AspS9I GGNCC 2 cut(s) 367, 683
AsuHPI GGTGA 2 cut(s) 758, 848
AvaII GGWCC 1 cut(s) 367
BaeGI GKGCMC 1 cut(s) 546
BanI GGYRCC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 546
BccI CCATC 3 cut(s) 236, 398, 805
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 778
BclI TGATCA 1 cut(s) 435
BfaI CTAG 3 cut(s) 509, 557, 687
BfmI CTRYAG 2 cut(s) 749, 757
BfoI RGCGCY 1 cut(s) 757
Bme1390I CCNGG 1 cut(s) 778
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 367, 683
BmiI GGNNCC 2 cut(s) 661, 684
BmrFI CCNGG 1 cut(s) 778
BmsI GCATC 1 cut(s) 829
BpmI CTGGAG 1 cut(s) 828
BsaJI CCNNGG 2 cut(s) 624, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 825
BseBI CCWGG 1 cut(s) 778
BseDI CCNNGG 2 cut(s) 624, 776
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 483, 825
BseMII CTCAG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 546
BsgI GTGCAG 2 cut(s) 548, 717
BshFI GGCC 2 cut(s) 408, 685
BshNI GGYRCC 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 546
BslI CCNNNNNNNGG 2 cut(s) 483, 825
BsnI GGCC 2 cut(s) 408, 685
Bsp1286I GDGCHC 2 cut(s) 205, 546
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 2 cut(s) 397, 435
BspANI GGCC 2 cut(s) 408, 685
BspCNI CTCAG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 661, 684
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 659
BsrGI TGTACA 1 cut(s) 595
BssECI CCNNGG 2 cut(s) 624, 776
BssMI GATC 2 cut(s) 397, 435
Bst2UI CCWGG 1 cut(s) 778
Bst4CI ACNGT 5 cut(s) 299, 316, 853, 860, 867
BstAPI GCANNNNNTGC 1 cut(s) 731
BstAUI TGTACA 1 cut(s) 595
BstC8I GCNNGC 2 cut(s) 306, 700
BstDEI CTNAG 3 cut(s) 17, 45, 452
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 757
BstHHI GCGC 1 cut(s) 756
BstKTI GATC 2 cut(s) 400, 438
BstMBI GATC 2 cut(s) 397, 435
BstMWI GCNNNNNNNGC 2 cut(s) 571, 731
BstNI CCWGG 1 cut(s) 778
BstSCI CCNGG 1 cut(s) 776
BstSFI CTRYAG 2 cut(s) 749, 757
BstSLI GKGCMC 1 cut(s) 546
BsuRI GGCC 2 cut(s) 408, 685
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 2 cut(s) 560, 849
Cac8I GCNNGC 2 cut(s) 306, 700
CaiI CAGNNNCTG 1 cut(s) 851
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 756
Cfr13I GGNCC 2 cut(s) 367, 683
Csp6I GTAC 1 cut(s) 596
CviAII CATG 3 cut(s) 209, 569, 825
CviQI GTAC 1 cut(s) 596
DdeI CTNAG 3 cut(s) 17, 45, 452
DpnI GATC 2 cut(s) 399, 437
DpnII GATC 2 cut(s) 397, 435
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 367
Eco47III AGCGCT 1 cut(s) 755
EcoO109I RGGNCCY 2 cut(s) 367, 683
EcoRII CCWGG 1 cut(s) 776
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 3 cut(s) 212, 572, 828
FatI CATG 3 cut(s) 208, 568, 824
FbaI TGATCA 1 cut(s) 435
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 205
FspBI CTAG 3 cut(s) 509, 557, 687
GlaI GCGC 1 cut(s) 755
GsuI CTGGAG 1 cut(s) 828
HaeII RGCGCY 1 cut(s) 757
HaeIII GGCC 2 cut(s) 408, 685
HhaI GCGC 1 cut(s) 756
Hin1II CATG 3 cut(s) 212, 572, 828
Hin6I GCGC 1 cut(s) 754
HinP1I GCGC 1 cut(s) 754
HindIII AAGCTT 2 cut(s) 47, 416
HinfI GANTC 3 cut(s) 446, 618, 745
HphI GGTGA 2 cut(s) 758, 848
Hpy166II GTNNAC 4 cut(s) 544, 788, 856, 863
Hpy188I TCNGA 3 cut(s) 10, 20, 625
Hpy188III TCNNGA 4 cut(s) 209, 395, 401, 590
Hpy8I GTNNAC 4 cut(s) 544, 788, 856, 863
HpyAV CCTTC 1 cut(s) 673
HpyCH4III ACNGT 5 cut(s) 299, 316, 853, 860, 867
HpyCH4V TGCA 7 cut(s) 261, 278, 373, 544, 565, 698, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 571, 731
HpyF3I CTNAG 3 cut(s) 17, 45, 452
Hsp92II CATG 3 cut(s) 212, 572, 828
HspAI GCGC 1 cut(s) 754
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 2 cut(s) 397, 435
LmnI GCTCC 1 cut(s) 847
LweI GCATC 1 cut(s) 829
MaeI CTAG 3 cut(s) 509, 557, 687
MaeIII GTNAC 1 cut(s) 447
MalI GATC 2 cut(s) 399, 437
MboI GATC 2 cut(s) 397, 435
MboII GAAGA 3 cut(s) 94, 170, 314
MhlI GDGCHC 2 cut(s) 205, 546
MluCI AATT 2 cut(s) 493, 690
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 575
MnlI CCTC 7 cut(s) 67, 358, 474, 477, 493, 585, 619
MseI TTAA 4 cut(s) 197, 420, 492, 504
MslI CAYNNNNRTG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 778
MvaI CCWGG 1 cut(s) 778
MwoI GCNNNNNNNGC 2 cut(s) 571, 731
NdeII GATC 2 cut(s) 397, 435
NlaIII CATG 3 cut(s) 212, 572, 828
NlaIV GGNNCC 2 cut(s) 661, 684
NmuCI GTSAC 1 cut(s) 447
PagI TCATGA 1 cut(s) 208
PfeI GAWTC 2 cut(s) 618, 745
PflMI CCANNNNNTGG 1 cut(s) 825
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 367
PsiI TTATAA 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 776
PspGI CCWGG 1 cut(s) 776
PspN4I GGNNCC 2 cut(s) 661, 684
PspPI GGNCC 2 cut(s) 367, 683
PspPPI RGGWCCY 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 851
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 4 cut(s) 197, 420, 492, 504
Sau3AI GATC 2 cut(s) 397, 435
Sau96I GGNCC 2 cut(s) 367, 683
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 778
SduI GDGCHC 2 cut(s) 205, 546
SfaNI GCATC 1 cut(s) 829
SfcI CTRYAG 2 cut(s) 749, 757
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 2 cut(s) 493, 690
SspI AATATT 1 cut(s) 378
SspMI CTAG 3 cut(s) 509, 557, 687
StyD4I CCNGG 1 cut(s) 776
TaaI ACNGT 5 cut(s) 299, 316, 853, 860, 867
TasI AATT 2 cut(s) 493, 690
TatI WGTACW 1 cut(s) 595
TfiI GAWTC 2 cut(s) 618, 745
Tru1I TTAA 4 cut(s) 197, 420, 492, 504
Tru9I TTAA 4 cut(s) 197, 420, 492, 504
TscAI CASTG 2 cut(s) 567, 856
TseFI GTSAC 1 cut(s) 447
Tsp45I GTSAC 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 466
TspRI CASTG 2 cut(s) 567, 856
Van91I CCANNNNNTGG 1 cut(s) 825
VneI GTGCAC 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 1 cut(s) 690
XspI CTAG 3 cut(s) 509, 557, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.