AT3G60620

Belongs to the CDS family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
22406313 .. 22408747
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60620.1

Sequence Viewer

Length: 1200 bp
ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCATTACCGCTTTCATTGAGCTCTCTCTGTACATGCCCTTGCCGTTCCTCTCCAAGGAAATATCTAATTCTTCCTCAATTCTCTGAAAAGTACCCGAAACCATTGTTGTCTCATTCTCGCTTTACTCCGATTTCTGTTAACCGGAGAGTTATCACGGCCGTTGCTCGAGCTGAATCAAATCAAATTGGTGACGATGCCAACTCAAAGGAGGAACACAACATAGATCAAGAATTGCAAAATGTTGAAGAAGATTCGAGTTTAGATGATCAGAAGCAAAAATCTAGAAGCCAGTTTAAGAAAAGAGTAACTTTCGGTCTAGGAATTGGATTGTCTGTAGGAGGTATTGTATTAGCTGGAGGATGGGTATTCACAGTAGCAGTAGCAGCTGCGGTTCTTCTAAGTGCCCGGGAATATTTCGAGCTGGTGAGAAGTAAAGGAATTGCTCAAGGAATGACACCTCCTCCACGATATCTTTCTAGAGTCTGCTCCATTATCTGTGCTCTTATGCCCATACTTACATTGTATTTTGGTCATATAGATATCTCGATAACTTCAGCGGCGTTTGTTGTTGCAATGGCATTGTTGTTACAGAGAGGAAACCCGCGTTTTTCTCAGCTGAGTAGTACGATGTTTGGCCTGTTTTACTGTGGATATCTTCCTTGTTTCTGGGTTAAGCTACGTTGTGGTCTTACTGCTCCAGTTCTAAACACCGGAATTGGGAGAAGCTGGCCTACTATCCTCGGCGGCCAAGCACATTGGACAGTTGGACTTGTTGCTATATTGATTTCTTTCTGTGGTATAATTGCCTCAGACACGTTTGCTTTTCTTGGTGGCAAGGCATTTGGTAGAACTCCTCTTATTAGCATTAGTCCAAAGAAGACATGGGAAGGAGCTTTTGCAGGACTTGTTGGTTGTATTTCCATTACCATTTTACTCTCCAAATCGTTGTCCTGGCCTCAATCTCTTGTCAGCACCATAGCTTTTGGAGTTCTTAACTTCTTCGGATCGGTCTTTGGTGACTTAACTGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCCGGCTCACTCATCCCTGGACACGGTGGCATATTGGACAGAGTTGATAGTTACATTTTCACTGGTGCATTAGCCTACTCGTTCGTAAGACTTCATGGAGTTTGA

Protein Analysis

399

Amino Acids

43.25

Weight (kDa)

9.31

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_1 PF01148 110 - 396 1.6e-66 Cytidylyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 637
AciI CCGC 6 cut(s) 41, 422, 590, 635, 777, 1082
AclWI GGATC 1 cut(s) 1045
AcoI YGGCCR 2 cut(s) 189, 778
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 64, 125, 658
AfiI CCNNNNNNNGG 3 cut(s) 87, 750, 1118
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 2 cut(s) 17, 278
AjnI CCWGG 2 cut(s) 983, 1111
Alw21I GWGCWC 2 cut(s) 56, 535
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 1045
Ama87I CYCGRG 2 cut(s) 198, 438
AoxI GGCC 5 cut(s) 189, 667, 761, 778, 986
ApeKI GCWGC 2 cut(s) 416, 419
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 2 cut(s) 439, 440
AsuHPI GGTGA 3 cut(s) 233, 469, 1061
AvaI CYCGRG 2 cut(s) 198, 438
BaeGI GKGCMC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 56
BarI GAAGNNNNNNTAC 2 cut(s) 748, 780
BbsI GAAGAC 1 cut(s) 917
Bbv12I GWGCWC 2 cut(s) 56, 535
BbvI GCAGC 2 cut(s) 406, 428
BccI CCATC 1 cut(s) 387
BceAI ACGGC 3 cut(s) 60, 176, 204
BciT130I CCWGG 2 cut(s) 985, 1113
BclI TGATCA 2 cut(s) 298, 1068
BcnI CCSGG 2 cut(s) 439, 440
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 3 cut(s) 315, 350, 510
BfmI CTRYAG 2 cut(s) 22, 366
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 417, 420, 591, 778
BlsI GCNGC 4 cut(s) 418, 421, 592, 779
Bme1390I CCNGG 4 cut(s) 439, 440, 985, 1113
BmeT110I CYCGRG 2 cut(s) 198, 438
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 4 cut(s) 439, 440, 985, 1113
BmsI GCATC 2 cut(s) 217, 1069
BpiI GAAGAC 1 cut(s) 917
BpmI CTGGAG 2 cut(s) 408, 714
BpuEI CTTGAG 1 cut(s) 462
BpuMI CCSGG 2 cut(s) 439, 440
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 86, 438, 772, 1111
BsaWI WCCGGW 2 cut(s) 174, 743
BsaXI ACNNNNNCTCC 6 cut(s) 363, 381, 393, 411, 478, 508
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 750, 1118
Bse1I ACTGG 3 cut(s) 322, 731, 1162
Bse3DI GCAATG 1 cut(s) 612
BseBI CCWGG 2 cut(s) 985, 1113
BseDI CCNNGG 4 cut(s) 86, 438, 772, 1111
BseGI GGATG 2 cut(s) 398, 1107
BseLI CCNNNNNNNGG 3 cut(s) 87, 750, 1118
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 4 cut(s) 641, 659, 855, 1050
BseNI ACTGG 3 cut(s) 322, 731, 1162
BseRI GAGGAG 2 cut(s) 483, 876
BseSI GKGCMC 1 cut(s) 439
BseX3I CGGCCG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 406, 428
Bsh1236I CGCG 1 cut(s) 637
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 5 cut(s) 191, 669, 763, 780, 988
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 56, 535
BsiHKCI CYCGRG 2 cut(s) 198, 438
BsiSI CCGG 4 cut(s) 175, 439, 744, 1098
BslI CCNNNNNNNGG 3 cut(s) 87, 750, 1118
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 5 cut(s) 191, 669, 763, 780, 988
BsoBI CYCGRG 2 cut(s) 198, 438
Bsp1286I GDGCHC 3 cut(s) 56, 439, 535
Bsp1407I TGTACA 1 cut(s) 62
Bsp143I GATC 4 cut(s) 256, 298, 1037, 1068
BspACI CCGC 6 cut(s) 41, 422, 590, 635, 777, 1082
BspANI GGCC 5 cut(s) 191, 669, 763, 780, 988
BspCNI CTCAG 4 cut(s) 642, 658, 854, 1051
BspFNI CGCG 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 1045
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 62
BsrI ACTGG 3 cut(s) 322, 731, 1162
BssECI CCNNGG 4 cut(s) 86, 438, 772, 1111
BssMI GATC 4 cut(s) 256, 298, 1037, 1068
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 985, 1113
Bst4CI ACNGT 4 cut(s) 406, 680, 796, 1121
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 761
BstDEI CTNAG 5 cut(s) 431, 645, 650, 841, 1059
BstENI CCTNNNNNAGG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 398, 1107
BstFNI CGCG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 259, 301, 1040, 1071
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 4 cut(s) 256, 298, 1037, 1068
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 40, 416
BstNI CCWGG 2 cut(s) 985, 1113
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 4 cut(s) 437, 438, 983, 1111
BstSFI CTRYAG 2 cut(s) 22, 366
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 2 cut(s) 406, 428
BstV2I GAAGAC 1 cut(s) 917
BstZI CGGCCG 1 cut(s) 189
BsuRI GGCC 5 cut(s) 191, 669, 763, 780, 988
BtsCI GGATG 2 cut(s) 398, 1107
BtsIMutI CAGTG 1 cut(s) 1155
Cac8I GCNNGC 1 cut(s) 761
CfoI GCGC 1 cut(s) 7
Cfr9I CCCGGG 1 cut(s) 438
Csp6I GTAC 3 cut(s) 63, 124, 657
CviAII CATG 3 cut(s) 66, 915, 1190
CviQI GTAC 3 cut(s) 63, 124, 657
DdeI CTNAG 5 cut(s) 431, 645, 650, 841, 1059
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 258, 300, 1039, 1070
DpnII GATC 4 cut(s) 256, 298, 1037, 1068
EaeI YGGCCR 2 cut(s) 189, 778
EagI CGGCCG 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 54
EclXI CGGCCG 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 56
Eco32I GATATC 3 cut(s) 503, 574, 686
Eco52I CGGCCG 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 2 cut(s) 198, 438
EcoICRI GAGCTC 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 983, 1111
EcoRV GATATC 3 cut(s) 503, 574, 686
EcoT14I CCWWGG 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 56
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 3 cut(s) 69, 918, 1193
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FatI CATG 3 cut(s) 65, 914, 1189
FauI CCCGC 2 cut(s) 642, 1075
FbaI TGATCA 2 cut(s) 298, 1068
Fnu4HI GCNGC 4 cut(s) 417, 420, 591, 778
FokI GGATG 2 cut(s) 405, 1094
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 4 cut(s) 417, 420, 591, 778
FspBI CTAG 3 cut(s) 315, 350, 510
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 417, 420, 591, 778
GsuI CTGGAG 2 cut(s) 408, 714
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 191, 669, 763, 780, 988
HapII CCGG 4 cut(s) 175, 439, 744, 1098
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 69, 918, 1193
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 5 cut(s) 206, 284, 513, 1061, 1094
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 4 cut(s) 175, 439, 744, 1098
HphI GGTGA 3 cut(s) 233, 469, 1061
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 5 cut(s) 118, 162, 303, 844, 1037
Hpy188III TCNNGA 4 cut(s) 260, 315, 510, 577
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 914
HpyCH4III ACNGT 4 cut(s) 406, 680, 796, 1121
HpyCH4IV ACGT 3 cut(s) 712, 848, 1075
HpyCH4V TGCA 4 cut(s) 268, 605, 932, 1163
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 416
HpyF3I CTNAG 5 cut(s) 431, 645, 650, 841, 1059
HpySE526I ACGT 3 cut(s) 712, 848, 1075
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 69, 918, 1193
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 2 cut(s) 298, 1068
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 4 cut(s) 256, 298, 1037, 1068
LmnI GCTCC 3 cut(s) 524, 733, 923
Lsp1109I GCAGC 2 cut(s) 406, 428
LweI GCATC 2 cut(s) 217, 1069
MaeI CTAG 3 cut(s) 315, 350, 510
MaeII ACGT 3 cut(s) 712, 848, 1075
MaeIII GTNAC 5 cut(s) 221, 337, 618, 1049, 1145
MalI GATC 4 cut(s) 258, 300, 1039, 1070
MboI GATC 4 cut(s) 256, 298, 1037, 1068
MboII GAAGA 7 cut(s) 95, 290, 293, 419, 680, 922, 1024
MhlI GDGCHC 3 cut(s) 56, 439, 535
MluCI AATT 8 cut(s) 99, 110, 216, 263, 354, 471, 747, 834
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 522, 1070, 1088
MmeI TCCRAC 1 cut(s) 778
MseI TTAA 5 cut(s) 171, 327, 705, 1026, 1055
MspA1I CMGCKG 3 cut(s) 419, 590, 649
MspI CCGG 4 cut(s) 175, 439, 744, 1098
MspR9I CCNGG 4 cut(s) 439, 440, 985, 1113
MvaI CCWGG 2 cut(s) 985, 1113
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 2 cut(s) 40, 416
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 439, 440
NdeII GATC 4 cut(s) 256, 298, 1037, 1068
NlaIII CATG 3 cut(s) 69, 918, 1193
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 753
NmuCI GTSAC 2 cut(s) 221, 1049
NspI RCATGY 1 cut(s) 69
PaeR7I CTCGAG 1 cut(s) 198
PfeI GAWTC 2 cut(s) 206, 284
PkrI GCNGC 4 cut(s) 418, 421, 592, 779
PleI GAGTC 3 cut(s) 521, 1069, 1088
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 521, 1069, 1088
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 983, 1111
PspGI CCWGG 2 cut(s) 983, 1111
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 198
PvuII CAGCTG 2 cut(s) 419, 649
RsaI GTAC 3 cut(s) 64, 125, 658
RsaNI GTAC 3 cut(s) 63, 124, 657
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 5 cut(s) 171, 327, 705, 1026, 1055
SatI GCNGC 4 cut(s) 417, 420, 591, 778
Sau3AI GATC 4 cut(s) 256, 298, 1037, 1068
SchI GAGTC 3 cut(s) 522, 1070, 1088
ScrFI CCNGG 4 cut(s) 439, 440, 985, 1113
SduI GDGCHC 3 cut(s) 56, 439, 535
SfaNI GCATC 2 cut(s) 217, 1069
SfcI CTRYAG 2 cut(s) 22, 366
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 198
SmaI CCCGGG 1 cut(s) 440
SmlI CTYRAG 2 cut(s) 198, 477
SmoI CTYRAG 2 cut(s) 198, 477
Sse9I AATT 8 cut(s) 99, 110, 216, 263, 354, 471, 747, 834
SsiI CCGC 6 cut(s) 41, 422, 590, 635, 777, 1082
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 446
SspMI CTAG 3 cut(s) 315, 350, 510
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 4 cut(s) 437, 438, 983, 1111
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 4 cut(s) 406, 680, 796, 1121
TaiI ACGT 3 cut(s) 715, 851, 1078
TaqI TCGA 4 cut(s) 199, 287, 450, 578
TaqII GACCGA 2 cut(s) 335, 1030
TasI AATT 8 cut(s) 99, 110, 216, 263, 354, 471, 747, 834
TatI WGTACW 1 cut(s) 62
TauI GCSGC 2 cut(s) 593, 780
TfiI GAWTC 2 cut(s) 206, 284
Tru1I TTAA 5 cut(s) 171, 327, 705, 1026, 1055
Tru9I TTAA 5 cut(s) 171, 327, 705, 1026, 1055
TscAI CASTG 1 cut(s) 1162
TseFI GTSAC 2 cut(s) 221, 1049
TseI GCWGC 2 cut(s) 416, 419
Tsp45I GTSAC 2 cut(s) 221, 1049
TspDTI ATGAA 2 cut(s) 36, 1178
TspMI CCCGGG 1 cut(s) 438
TspRI CASTG 1 cut(s) 1162
XagI CCTNNNNNAGG 1 cut(s) 85
XbaI TCTAGA 2 cut(s) 314, 509
XceI RCATGY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 912
XhoI CTCGAG 1 cut(s) 198
XmaI CCCGGG 1 cut(s) 438
XspI CTAG 3 cut(s) 315, 350, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.