Rmu_sc0012100.1_g000013

Phosphatidate

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012100.1
Physical Location & Seq
Forward (+)
54216 .. 59642
5427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012100.1_g000013.1.cds

Sequence Viewer

Length: 1353 bp
atggctacgacgtcgtatttggacctcaatcgctgcagcaggccactcccgccctctctctcctctctctccgcctgtccctgccgtccctccgccgttactctccctcgttcgcgcgccaaattgggtggtctagatttctccatcgatggaactagacctgttgttgggctgggcccaactagaggcttgggccgcccccgccgccgcctaatcgccgccgtggctcgagccgacccggaccatctcggcgatggcaatgccaaacaggaagtccacaaaggccgtgaattgtcactgaatgaagatgcggtcgcagagaatcaagagaaggcgaatcagttaaaaaaaaggattgtttttggacttggcattggattatctattggaattgttgtgttggctggaggatgggtattcacaacagttgtggcagcagctgtatttgttggcgcacgggagtattttgaattggttaggagtcgtggaattactgcaggaatgacccctccacctagatacgtttcacgagtttgttctgttatttgtgctctcatgcccttacttaccttgtatcgcggtcagattgatgtttctgtgacatctgctgcctttttggttgctatggcattgcatttacagagaggaaatcctcgctttgcacagctcagtagcaccatgtttgggctattttattgtggatatcttccctgcttttgggttaagcttcgatgtggtttagcggccccagccttaaacactggaattggagcatcatggcccatccttctcggtggacaagctcagtggaccgttggccttgttgcaaccttgatttcattcagcagcattattgcagccgacacttatgcttttatgggtggcaaggcttttggtaggacaccgcttactagtgttagtccaaagaagacatgggaaggaacaattgcaggcttatgtggttgtattgccactactgtagtactatcaaagattttttgctggccaaaatctttgctaagctctatagcttttgggattctgaacttctttgggtctgtctttggtgatcttactgaatcaatgatcaaacgtgatgcgggcgtaaaggactctggatctctaataccaggacatggtggaatactggatagagtggacaggaaggtgcccttcaaccctattgagcttgagacttcattccctgactcacctggtactgataacctttacctgttcaagggatatacttgttttacactgtctcttggtgatcacttcaaactagctacagatagtcaaccaactattgtcgatgtctgcagtaaagctgctttgagccattatcagtag

Protein Analysis

450

Amino Acids

48.06

Weight (kDa)

9.34

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 1168
AccB7I CCANNNNNTGG 1 cut(s) 1136
AccII CGCG 3 cut(s) 115, 117, 579
AclWI GGATC 1 cut(s) 1126
AcoI YGGCCR 1 cut(s) 1004
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 984, 1219
AfiI CCNNNNNNNGG 6 cut(s) 167, 185, 684, 717, 1136, 1240
AgsI TTSAA 4 cut(s) 470, 1177, 1240, 1282
AhlI ACTAGT 1 cut(s) 911
AjnI CCWGG 2 cut(s) 1129, 1213
AluBI AGCT 9 cut(s) 440, 667, 727, 803, 1023, 1031, 1189, 1289, 1331
AluI AGCT 9 cut(s) 440, 667, 727, 803, 1023, 1031, 1189, 1289, 1331
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 2 cut(s) 1187, 1269
AlwI GGATC 1 cut(s) 1126
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 8 cut(s) 41, 175, 193, 283, 744, 779, 817, 1004
ApaI GGGCCC 1 cut(s) 179
ApeKI GCWGC 8 cut(s) 33, 36, 434, 437, 608, 846, 857, 1331
ArsI GACNNNNNNTTYG 3 cut(s) 33, 258, 290
AspLEI GCGC 3 cut(s) 117, 119, 455
AspS9I GGNCC 8 cut(s) 22, 175, 176, 193, 241, 745, 780, 810
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 1079, 1203, 1283
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 3 cut(s) 22, 241, 810
BaeGI GKGCMC 2 cut(s) 179, 1173
BalI TGGCCA 1 cut(s) 1006
BanI GGYRCC 1 cut(s) 1168
BanII GRGCYC 1 cut(s) 179
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 8 cut(s) 20, 48, 446, 449, 595, 858, 869, 1318
BccI CCATC 6 cut(s) 143, 152, 248, 252, 405, 791
BceAI ACGGC 4 cut(s) 69, 80, 206, 270
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 851, 885
BciT130I CCWGG 2 cut(s) 1131, 1215
BclI TGATCA 2 cut(s) 1086, 1273
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 1187, 1269
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 6 cut(s) 134, 156, 183, 516, 912, 1286
BfmI CTRYAG 6 cut(s) 34, 495, 978, 1026, 1290, 1321
BglI GCCNNNNNGGC 1 cut(s) 224
BlpI GCTNAGC 1 cut(s) 1019
BmcAI AGTACT 1 cut(s) 984
Bme1390I CCNGG 3 cut(s) 239, 1131, 1215
Bme18I GGWCC 3 cut(s) 22, 241, 810
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 8 cut(s) 22, 175, 176, 193, 241, 745, 780, 810
BmiI GGNNCC 3 cut(s) 177, 747, 1170
BmrFI CCNGG 3 cut(s) 239, 1131, 1215
BmsI GCATC 3 cut(s) 298, 782, 1087
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 1019
BpuEI CTTGAG 1 cut(s) 1211
BpuMI CCSGG 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 6 cut(s) 167, 185, 684, 717, 1136, 1240
Bse1I ACTGG 2 cut(s) 766, 1152
Bse3DI GCAATG 2 cut(s) 265, 629
BseBI CCWGG 2 cut(s) 1131, 1215
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 416, 783
BseLI CCNNNNNNNGG 6 cut(s) 167, 185, 684, 717, 1136, 1240
BseMI GCAATG 2 cut(s) 265, 629
BseMII CTCAG 2 cut(s) 682, 818
BseNI ACTGG 2 cut(s) 766, 1152
BsePI GCGCGC 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 2 cut(s) 179, 1173
BseXI GCAGC 8 cut(s) 20, 48, 446, 449, 595, 858, 869, 1318
BseYI CCCAGC 2 cut(s) 172, 748
Bsh1236I CGCG 3 cut(s) 115, 117, 579
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 8 cut(s) 43, 177, 195, 285, 746, 781, 819, 1006
BshNI GGYRCC 1 cut(s) 1168
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 2 cut(s) 63, 72
BslI CCNNNNNNNGG 6 cut(s) 167, 185, 684, 717, 1136, 1240
BsmAI GTCTC 2 cut(s) 1187, 1269
BsmFI GGGAC 2 cut(s) 63, 72
BsnI GGCC 8 cut(s) 43, 177, 195, 285, 746, 781, 819, 1006
BsoBI CYCGRG 1 cut(s) 228
Bsp120I GGGCCC 1 cut(s) 175
Bsp1286I GDGCHC 3 cut(s) 179, 553, 1173
Bsp143I GATC 4 cut(s) 1069, 1086, 1118, 1273
Bsp1720I GCTNAGC 1 cut(s) 1019
BspANI GGCC 8 cut(s) 43, 177, 195, 285, 746, 781, 819, 1006
BspCNI CTCAG 2 cut(s) 681, 817
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 3 cut(s) 115, 117, 579
BspLI GGNNCC 3 cut(s) 177, 747, 1170
BspMAI CTGCAG 3 cut(s) 38, 499, 1325
BspPI GGATC 1 cut(s) 1126
BspT107I GGYRCC 1 cut(s) 1168
BsrDI GCAATG 2 cut(s) 265, 629
BsrI ACTGG 2 cut(s) 766, 1152
BssECI CCNNGG 1 cut(s) 222
BssHII GCGCGC 1 cut(s) 115
BssMI GATC 4 cut(s) 1069, 1086, 1118, 1273
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 2 cut(s) 1131, 1215
Bst4CI ACNGT 4 cut(s) 427, 814, 979, 1263
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 5 cut(s) 41, 117, 952, 1004, 1102
BstDEI CTNAG 3 cut(s) 668, 804, 1019
BstDSI CCRYGG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 1238
BstF5I GGATG 2 cut(s) 416, 783
BstFNI CGCG 3 cut(s) 115, 117, 579
BstHHI GCGC 3 cut(s) 117, 119, 455
BstKTI GATC 4 cut(s) 1072, 1089, 1121, 1276
BstMAI GTCTC 2 cut(s) 1187, 1269
BstMBI GATC 4 cut(s) 1069, 1086, 1118, 1273
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 6 cut(s) 49, 195, 201, 204, 224, 749
BstNI CCWGG 2 cut(s) 1131, 1215
BstSCI CCNGG 3 cut(s) 237, 1129, 1213
BstSFI CTRYAG 6 cut(s) 34, 495, 978, 1026, 1290, 1321
BstSLI GKGCMC 2 cut(s) 179, 1173
BstUI CGCG 3 cut(s) 115, 117, 579
BstV1I GCAGC 8 cut(s) 20, 48, 446, 449, 595, 858, 869, 1318
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 1118
BstYI RGATCY 1 cut(s) 1118
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 8 cut(s) 43, 177, 195, 285, 746, 781, 819, 1006
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 416, 783
BtsIMutI CAGTG 4 cut(s) 296, 759, 812, 1259
Cac8I GCNNGC 5 cut(s) 41, 117, 952, 1004, 1102
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 3 cut(s) 117, 119, 455
Cfr13I GGNCC 8 cut(s) 22, 175, 176, 193, 241, 745, 780, 810
ClaI ATCGAT 1 cut(s) 147
CsiI ACCWGGT 1 cut(s) 1213
Csp6I GTAC 2 cut(s) 983, 1218
CspCI CAANNNNNGTGG 6 cut(s) 109, 144, 411, 446, 788, 823
CviAII CATG 5 cut(s) 556, 679, 777, 933, 1136
CviQI GTAC 2 cut(s) 983, 1218
DdeI CTNAG 3 cut(s) 668, 804, 1019
DpnI GATC 4 cut(s) 1071, 1088, 1120, 1275
DpnII GATC 4 cut(s) 1069, 1086, 1118, 1273
EaeI YGGCCR 1 cut(s) 1004
EciI GGCGGA 2 cut(s) 61, 82
Eco24I GRGCYC 1 cut(s) 179
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 3 cut(s) 22, 241, 810
Eco88I CYCGRG 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 1238
EcoRII CCWGG 2 cut(s) 1129, 1213
EcoRV GATATC 1 cut(s) 704
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 5 cut(s) 559, 682, 780, 936, 1139
FalI AAGNNNNNCTT 2 cut(s) 1157, 1189
FaqI GGGAC 2 cut(s) 63, 72
FatI CATG 5 cut(s) 555, 678, 776, 932, 1135
FauI CCCGC 3 cut(s) 57, 209, 1093
FbaI TGATCA 2 cut(s) 1086, 1273
FokI GGATG 2 cut(s) 423, 770
FriOI GRGCYC 1 cut(s) 179
FspBI CTAG 6 cut(s) 134, 156, 183, 516, 912, 1286
GlaI GCGC 3 cut(s) 116, 118, 454
GsaI CCCAGC 2 cut(s) 176, 752
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 8 cut(s) 43, 177, 195, 285, 746, 781, 819, 1006
HapII CCGG 1 cut(s) 239
HhaI GCGC 3 cut(s) 117, 119, 455
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 5 cut(s) 559, 682, 780, 936, 1139
Hin6I GCGC 3 cut(s) 115, 117, 453
HinP1I GCGC 3 cut(s) 115, 117, 453
HincII GTYRAC 1 cut(s) 1301
HindII GTYRAC 1 cut(s) 1301
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 7 cut(s) 322, 337, 481, 1039, 1079, 1112, 1208
HpaII CCGG 1 cut(s) 239
HphI GGTGA 3 cut(s) 1079, 1203, 1283
Hpy166II GTNNAC 5 cut(s) 277, 797, 810, 1159, 1301
Hpy188I TCNGA 2 cut(s) 585, 1044
Hpy188III TCNNGA 4 cut(s) 134, 326, 528, 1116
Hpy8I GTNNAC 5 cut(s) 277, 797, 810, 1159, 1301
Hpy99I CGWCG 2 cut(s) 13, 16
HpyAV CCTTC 5 cut(s) 325, 797, 932, 1159, 1183
HpyCH4III ACNGT 4 cut(s) 427, 814, 979, 1263
HpyCH4IV ACGT 3 cut(s) 11, 522, 1093
HpyCH4V TGCA 8 cut(s) 36, 497, 634, 662, 827, 857, 950, 1323
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 195, 201, 204, 224, 749
HpyF3I CTNAG 3 cut(s) 668, 804, 1019
HpySE526I ACGT 3 cut(s) 11, 522, 1093
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 5 cut(s) 559, 682, 780, 936, 1139
HspAI GCGC 3 cut(s) 115, 117, 453
Ksp22I TGATCA 2 cut(s) 1086, 1273
Kzo9I GATC 4 cut(s) 1069, 1086, 1118, 1273
LmnI GCTCC 1 cut(s) 770
Lsp1109I GCAGC 8 cut(s) 20, 48, 446, 449, 595, 858, 869, 1318
LweI GCATC 3 cut(s) 298, 782, 1087
MabI ACCWGGT 1 cut(s) 1213
MaeI CTAG 6 cut(s) 134, 156, 183, 516, 912, 1286
MaeII ACGT 3 cut(s) 11, 522, 1093
MaeIII GTNAC 3 cut(s) 97, 294, 598
MalI GATC 4 cut(s) 1071, 1088, 1120, 1275
MboI GATC 4 cut(s) 1069, 1086, 1118, 1273
MboII GAAGA 3 cut(s) 317, 698, 940
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 1 cut(s) 1118
MhlI GDGCHC 3 cut(s) 179, 553, 1173
MlsI TGGCCA 1 cut(s) 1006
MluCI AATT 7 cut(s) 122, 290, 390, 470, 489, 765, 945
MluNI TGGCCA 1 cut(s) 1006
MlyI GAGTC 3 cut(s) 490, 1106, 1202
Mox20I TGGCCA 1 cut(s) 1006
MscI TGGCCA 1 cut(s) 1006
MseI TTAA 3 cut(s) 344, 723, 755
Msp20I TGGCCA 1 cut(s) 1006
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 3 cut(s) 239, 1131, 1215
MunI CAATTG 1 cut(s) 945
MvaI CCWGG 2 cut(s) 1131, 1215
MvnI CGCG 3 cut(s) 115, 117, 579
MwoI GCNNNNNNNGC 6 cut(s) 49, 195, 201, 204, 224, 749
NciI CCSGG 1 cut(s) 239
NdeII GATC 4 cut(s) 1069, 1086, 1118, 1273
NlaIII CATG 5 cut(s) 559, 682, 780, 936, 1139
NlaIV GGNNCC 3 cut(s) 177, 747, 1170
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 294, 598
PaeR7I CTCGAG 1 cut(s) 228
PauI GCGCGC 1 cut(s) 115
PfeI GAWTC 4 cut(s) 322, 337, 1039, 1079
PflMI CCANNNNNTGG 1 cut(s) 1136
PleI GAGTC 3 cut(s) 489, 1106, 1202
PpsI GAGTC 3 cut(s) 489, 1106, 1202
Psp6I CCWGG 2 cut(s) 1129, 1213
PspFI CCCAGC 2 cut(s) 172, 748
PspGI CCWGG 2 cut(s) 1129, 1213
PspN4I GGNNCC 3 cut(s) 177, 747, 1170
PspOMI GGGCCC 1 cut(s) 175
PspPI GGNCC 8 cut(s) 22, 175, 176, 193, 241, 745, 780, 810
PspXI VCTCGAGB 1 cut(s) 228
PstI CTGCAG 3 cut(s) 38, 499, 1325
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 1118
PteI GCGCGC 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 984, 1219
RsaNI GTAC 2 cut(s) 983, 1218
SaqAI TTAA 3 cut(s) 344, 723, 755
Sau3AI GATC 4 cut(s) 1069, 1086, 1118, 1273
Sau96I GGNCC 8 cut(s) 22, 175, 176, 193, 241, 745, 780, 810
ScaI AGTACT 1 cut(s) 984
SchI GAGTC 3 cut(s) 490, 1106, 1202
ScrFI CCNGG 3 cut(s) 239, 1131, 1215
SduI GDGCHC 3 cut(s) 179, 553, 1173
SexAI ACCWGGT 1 cut(s) 1213
SfaNI GCATC 3 cut(s) 298, 782, 1087
SfcI CTRYAG 6 cut(s) 34, 495, 978, 1026, 1290, 1321
Sfr274I CTCGAG 1 cut(s) 228
SinI GGWCC 3 cut(s) 22, 241, 810
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 228, 1190
SmoI CTYRAG 2 cut(s) 228, 1190
SpeI ACTAGT 1 cut(s) 911
Sse9I AATT 7 cut(s) 122, 290, 390, 470, 489, 765, 945
SspMI CTAG 6 cut(s) 134, 156, 183, 516, 912, 1286
StyD4I CCNGG 3 cut(s) 237, 1129, 1213
TaaI ACNGT 4 cut(s) 427, 814, 979, 1263
TaiI ACGT 3 cut(s) 14, 525, 1096
TaqI TCGA 4 cut(s) 147, 229, 730, 1314
TasI AATT 7 cut(s) 122, 290, 390, 470, 489, 765, 945
TatI WGTACW 1 cut(s) 982
TauI GCSGC 5 cut(s) 198, 207, 210, 221, 746
TfiI GAWTC 4 cut(s) 322, 337, 1039, 1079
Tru1I TTAA 3 cut(s) 344, 723, 755
Tru9I TTAA 3 cut(s) 344, 723, 755
TscAI CASTG 4 cut(s) 303, 766, 812, 1266
TseFI GTSAC 2 cut(s) 294, 598
TseI GCWGC 8 cut(s) 33, 36, 434, 437, 608, 846, 857, 1331
Tsp45I GTSAC 2 cut(s) 294, 598
TspDTI ATGAA 3 cut(s) 318, 828, 1188
TspRI CASTG 4 cut(s) 303, 766, 812, 1266
Van91I CCANNNNNTGG 1 cut(s) 1136
VpaK11BI GGWCC 3 cut(s) 22, 241, 810
XagI CCTNNNNNAGG 1 cut(s) 1238
XbaI TCTAGA 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 930
XhoI CTCGAG 1 cut(s) 228
XspI CTAG 6 cut(s) 134, 156, 183, 516, 912, 1286
ZraI GACGTC 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.