pycom02g17210

Phosphatidate

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
14948574 .. 14953829
5256 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17210.1

Sequence Viewer

Length: 1269 bp
ATGGCGCGGCACTCTCTGCAGCAACCACAAAATCGCAATCAACATGGTCTTGTTAAATCTCAGCATCCAATCCCTAATAAATGTGCCTACGCCCCAATAAATTCACAACCCCTCATGGCAACGACGTCGTTTTCCCAACGCCACCGGTGCAGTCCACCCCCACTCCCCTTCCCCTCTCTTTGCTTCTGTCCCTGCGGTCCCTCACCCTCAAAAACCCTAGTTTTTAATCGTCCGTCGGCGAAATTGGGTAATTTGGATCTCTTGTTCGATGGGAATAGACGTCAGCTGGGGCTAGGCCGGAATAGAGTTTTTGCGCGCCGCCGTGTAATTACGGCTGTGGCTCGGGCGGAGCCGGAGCATCTTGGCGATGACAATGCCGATCAGGAAGTCCACAAAGGCAGTAAATTGTCATCAAACGAGGATGTGGTCTCAGAGCATCAACAGAAAGCAAGTCAGTTGAAGAAAAGAATTGTCTTTGGATTTGGCATTGGGTTATCTGTTGCCGTTGTTGTGTTGGCTGGAGGATGGGTATTCACAGCCGCTGTGGCAGCAGCTGTTTTTATTGGTGCACGTGAGTACTTTGAATTGGTTAGGAGTCGTGGAATTACTGAAGGAATGACACCTCCACCTCGATATGTATCACGAGTTTGCTCTGTAATTTGTGCTCTCATGCCCCTAGTAACCTTGTATCGCGGTCAGATTGATGTTTCAGTGACCTCTGCTTCCTTTTTTGTTGCTATAGCATTGCTTTTACAGAGAGGAAATCCTCGCTTTGCACAACTTAGCAGCACTATGTTTGGGCTATTTTATTGTGCTTATCTTCCTTGTTTTTGGGTTAAGCTTCGATGTGGTCTAGCAGCACCAGCCTTGCACACTAGAATTGGAGCAGCATGGCCCATACTTCTTGGTGGACAAGCGCATTGGACTGTTGGTCTTGTGGCAACCTTGATTTCTTTCAGTAGCATTATTGCAGCCGACACTTATGCCTTTGTGGGTGGCAAGGCATTTGGTAGGACGCCCCTGACTAGTGTTAGTCCAAAGAAGACGTGGGAAGGAGCTATTGTAGGCCTGGGTGGTTGTATAGCCACTTCTGTTGTGTTATCAAGGATTTTTTGCTGGCCAAAATCTTTGCTAAGTGCTATAGCTTTTGGGCTTCTCAATTTTTTTGCGTCTGTCTTTGGTGATCGTACCGAATCAATGATCAAACGTGATGCGGGTGTTAAGGACTCCGCATTACCAATACAGAAATATAGGTGGAATACTAGATAG

Protein Analysis

423

Amino Acids

45.92

Weight (kDa)

10.08

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_1 PF01148 154 - 411 1.5e-46 Cytidylyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 128, 283
AccII CGCG 3 cut(s) 7, 316, 693
AciI CCGC 8 cut(s) 7, 195, 319, 347, 540, 693, 1214, 1230
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 1118
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 630
AcvI CACGTG 1 cut(s) 572
AcyI GRCGYC 3 cut(s) 125, 280, 1016
AfaI GTAC 2 cut(s) 578, 1189
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 2 cut(s) 460, 584
AhdI GACNNNNNGTC 1 cut(s) 930
AhlI ACTAGT 1 cut(s) 1025
AjiI CACGTC 1 cut(s) 1047
AjnI CCWGG 1 cut(s) 1068
AloI GAACNNNNNNTCC 2 cut(s) 248, 280
AluBI AGCT 5 cut(s) 286, 554, 841, 1058, 1145
AluI AGCT 5 cut(s) 286, 554, 841, 1058, 1145
Alw21I GWGCWC 2 cut(s) 571, 667
Alw26I GTCTC 1 cut(s) 433
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 2 cut(s) 542, 554
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 4 cut(s) 295, 893, 1066, 1118
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 7 cut(s) 19, 548, 551, 786, 857, 887, 971
ApoI RAATTY 1 cut(s) 100
AsiGI ACCGGT 1 cut(s) 144
AspLEI GCGC 4 cut(s) 7, 316, 318, 919
AspS9I GGNCC 2 cut(s) 197, 894
AsuHPI GGTGA 2 cut(s) 195, 1193
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 571
BalI TGGCCA 1 cut(s) 1120
BarI GAAGNNNNNNTAC 2 cut(s) 1072, 1104
BauI CACGAG 1 cut(s) 642
BbrPI CACGTG 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 1049
Bbv12I GWGCWC 2 cut(s) 571, 667
BbvI GCAGC 7 cut(s) 31, 560, 563, 798, 869, 899, 983
BccI CCATC 2 cut(s) 263, 519
BceAI ACGGC 3 cut(s) 306, 348, 488
BcgI CGANNNNNNTGC 6 cut(s) 108, 142, 356, 390, 965, 999
BciT130I CCWGG 1 cut(s) 1070
BclI TGATCA 1 cut(s) 1200
BcoDI GTCTC 1 cut(s) 433
BcuI ACTAGT 1 cut(s) 1025
BfaI CTAG 7 cut(s) 218, 293, 677, 854, 876, 1026, 1263
BfmI CTRYAG 3 cut(s) 17, 738, 1140
BglI GCCNNNNNGGC 1 cut(s) 545
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 1 cut(s) 1070
Bme18I GGWCC 1 cut(s) 197
BmeRI GACNNNNNGTC 1 cut(s) 930
BmeT110I CYCGRG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 1047
BmgT120I GGNCC 2 cut(s) 197, 894
BmiI GGNNCC 2 cut(s) 199, 351
BmrFI CCNGG 1 cut(s) 1070
BmsI GCATC 4 cut(s) 73, 367, 445, 1201
BpiI GAAGAC 1 cut(s) 1049
BpmI CTGGAG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 637
BsaHI GRCGYC 3 cut(s) 125, 280, 1016
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 1069
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 6 cut(s) 147, 177, 513, 543, 1047, 1077
Bse118I RCCGGY 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 743
Bse8I GATNNNNATC 1 cut(s) 637
BseBI CCWGG 1 cut(s) 1070
BseDI CCNNGG 1 cut(s) 1069
BseGI GGATG 3 cut(s) 64, 427, 530
BseJI GATNNNNATC 1 cut(s) 637
BseMI GCAATG 1 cut(s) 743
BseMII CTCAG 2 cut(s) 74, 444
BsePI GCGCGC 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 7 cut(s) 31, 560, 563, 798, 869, 899, 983
BseYI CCCAGC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 169
Bsh1236I CGCG 3 cut(s) 7, 316, 693
BshFI GGCC 4 cut(s) 297, 895, 1068, 1120
BshTI ACCGGT 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 571, 667
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 3 cut(s) 145, 298, 353
BslFI GGGAC 2 cut(s) 174, 183
BsmAI GTCTC 1 cut(s) 433
BsmFI GGGAC 2 cut(s) 174, 183
BsnI GGCC 4 cut(s) 297, 895, 1068, 1120
Bso31I GGTCTC 1 cut(s) 433
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 571, 667
Bsp143I GATC 4 cut(s) 256, 379, 1183, 1200
BspACI CCGC 8 cut(s) 7, 195, 319, 347, 540, 693, 1214, 1230
BspANI GGCC 4 cut(s) 297, 895, 1068, 1120
BspCNI CTCAG 2 cut(s) 73, 443
BspFNI CGCG 3 cut(s) 7, 316, 693
BspLI GGNNCC 2 cut(s) 199, 351
BspMAI CTGCAG 1 cut(s) 21
BspPI GGATC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 743
BsrFI RCCGGY 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 1069
BssHII GCGCGC 1 cut(s) 314
BssMI GATC 4 cut(s) 256, 379, 1183, 1200
BssNI GRCGYC 3 cut(s) 125, 280, 1016
BssSI CACGAG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 1 cut(s) 1070
Bst4CI ACNGT 1 cut(s) 928
BstACI GRCGYC 3 cut(s) 125, 280, 1016
BstAPI GCANNNNNTGC 1 cut(s) 16
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 316, 1118
BstDEI CTNAG 4 cut(s) 60, 430, 782, 1133
BstF5I GGATG 3 cut(s) 64, 427, 530
BstFNI CGCG 3 cut(s) 7, 316, 693
BstHHI GCGC 4 cut(s) 7, 316, 318, 919
BstKTI GATC 4 cut(s) 259, 382, 1186, 1203
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 4 cut(s) 256, 379, 1183, 1200
BstMWI GCNNNNNNNGC 5 cut(s) 16, 147, 545, 548, 863
BstNI CCWGG 1 cut(s) 1070
BstSCI CCNGG 1 cut(s) 1068
BstSFI CTRYAG 3 cut(s) 17, 738, 1140
BstSLI GKGCMC 1 cut(s) 571
BstUI CGCG 3 cut(s) 7, 316, 693
BstV1I GCAGC 7 cut(s) 31, 560, 563, 798, 869, 899, 983
BstV2I GAAGAC 1 cut(s) 1049
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 4 cut(s) 297, 895, 1068, 1120
BtgZI GCGATG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 1047
BtsCI GGATG 3 cut(s) 64, 427, 530
BtsIMutI CAGTG 1 cut(s) 717
Cac8I GCNNGC 2 cut(s) 316, 1118
CaiI CAGNNNCTG 2 cut(s) 542, 554
CfoI GCGC 4 cut(s) 7, 316, 318, 919
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 197, 894
CseI GACGC 2 cut(s) 1024, 1158
Csp6I GTAC 2 cut(s) 577, 1188
CspAI ACCGGT 1 cut(s) 144
CspCI CAANNNNNGTGG 2 cut(s) 1075, 1110
CviAII CATG 4 cut(s) 44, 115, 670, 891
CviQI GTAC 2 cut(s) 577, 1188
DdeI CTNAG 4 cut(s) 60, 430, 782, 1133
DpnI GATC 4 cut(s) 258, 381, 1185, 1202
DpnII GATC 4 cut(s) 256, 379, 1183, 1200
DriI GACNNNNNGTC 1 cut(s) 930
EaeI YGGCCR 1 cut(s) 1118
Eam1105I GACNNNNNGTC 1 cut(s) 930
EciI GGCGGA 1 cut(s) 362
Eco147I AGGCCT 1 cut(s) 1068
Eco31I GGTCTC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 630
Eco72I CACGTG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 1068
FaeI CATG 4 cut(s) 47, 118, 673, 894
FaqI GGGAC 2 cut(s) 174, 183
FatI CATG 4 cut(s) 43, 114, 669, 890
FauI CCCGC 1 cut(s) 1207
FbaI TGATCA 1 cut(s) 1200
FokI GGATG 3 cut(s) 51, 434, 537
FspBI CTAG 7 cut(s) 218, 293, 677, 854, 876, 1026, 1263
GlaI GCGC 4 cut(s) 6, 315, 317, 918
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 4 cut(s) 297, 895, 1068, 1120
HapII CCGG 3 cut(s) 145, 298, 353
HgaI GACGC 2 cut(s) 1024, 1158
HhaI GCGC 4 cut(s) 7, 316, 318, 919
Hin1I GRCGYC 3 cut(s) 125, 280, 1016
Hin1II CATG 4 cut(s) 47, 118, 673, 894
Hin6I GCGC 4 cut(s) 5, 314, 316, 917
HinP1I GCGC 4 cut(s) 5, 314, 316, 917
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 3 cut(s) 595, 1193, 1226
HpaII CCGG 3 cut(s) 145, 298, 353
HphI GGTGA 2 cut(s) 195, 1193
Hpy166II GTNNAC 4 cut(s) 155, 391, 569, 911
Hpy188I TCNGA 2 cut(s) 433, 699
Hpy188III TCNNGA 2 cut(s) 383, 642
Hpy8I GTNNAC 4 cut(s) 155, 391, 569, 911
Hpy99I CGWCG 3 cut(s) 127, 130, 238
HpyAV CCTTC 3 cut(s) 178, 605, 1046
HpyCH4III ACNGT 1 cut(s) 928
HpyCH4IV ACGT 5 cut(s) 125, 280, 571, 1046, 1207
HpyCH4V TGCA 6 cut(s) 19, 150, 569, 776, 871, 971
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 147, 545, 548, 863
HpyF3I CTNAG 4 cut(s) 60, 430, 782, 1133
HpySE526I ACGT 5 cut(s) 125, 280, 571, 1046, 1207
Hsp92I GRCGYC 3 cut(s) 125, 280, 1016
Hsp92II CATG 4 cut(s) 47, 118, 673, 894
HspAI GCGC 4 cut(s) 5, 314, 316, 917
Ksp22I TGATCA 1 cut(s) 1200
Kzo9I GATC 4 cut(s) 256, 379, 1183, 1200
LmnI GCTCC 4 cut(s) 349, 355, 884, 1055
Lsp1109I GCAGC 7 cut(s) 31, 560, 563, 798, 869, 899, 983
LweI GCATC 4 cut(s) 73, 367, 445, 1201
MaeI CTAG 7 cut(s) 218, 293, 677, 854, 876, 1026, 1263
MaeII ACGT 5 cut(s) 125, 280, 571, 1046, 1207
MaeIII GTNAC 2 cut(s) 679, 712
MalI GATC 4 cut(s) 258, 381, 1185, 1202
MboI GATC 4 cut(s) 256, 379, 1183, 1200
MboII GAAGA 3 cut(s) 472, 812, 1054
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 571, 667
MlsI TGGCCA 1 cut(s) 1120
MluNI TGGCCA 1 cut(s) 1120
MlyI GAGTC 2 cut(s) 604, 1220
Mox20I TGGCCA 1 cut(s) 1120
MscI TGGCCA 1 cut(s) 1120
MseI TTAA 4 cut(s) 54, 225, 837, 1221
Msp20I TGGCCA 1 cut(s) 1120
MspA1I CMGCKG 3 cut(s) 286, 542, 554
MspI CCGG 3 cut(s) 145, 298, 353
MspR9I CCNGG 1 cut(s) 1070
MvaI CCWGG 1 cut(s) 1070
MvnI CGCG 3 cut(s) 7, 316, 693
MwoI GCNNNNNNNGC 5 cut(s) 16, 147, 545, 548, 863
NdeII GATC 4 cut(s) 256, 379, 1183, 1200
NlaIII CATG 4 cut(s) 47, 118, 673, 894
NlaIV GGNNCC 2 cut(s) 199, 351
NmuCI GTSAC 1 cut(s) 712
PauI GCGCGC 1 cut(s) 314
PceI AGGCCT 1 cut(s) 1068
PfeI GAWTC 1 cut(s) 1193
PinAI ACCGGT 1 cut(s) 144
PleI GAGTC 2 cut(s) 603, 1220
PmaCI CACGTG 1 cut(s) 572
PmlI CACGTG 1 cut(s) 572
PpsI GAGTC 2 cut(s) 603, 1220
Ppu21I YACGTR 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 1068
PspCI CACGTG 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 1068
PspN4I GGNNCC 2 cut(s) 199, 351
PspPI GGNCC 2 cut(s) 197, 894
PstI CTGCAG 1 cut(s) 21
PstNI CAGNNNCTG 2 cut(s) 542, 554
PsuI RGATCY 1 cut(s) 256
PteI GCGCGC 1 cut(s) 314
PvuII CAGCTG 2 cut(s) 286, 554
RsaI GTAC 2 cut(s) 578, 1189
RsaNI GTAC 2 cut(s) 577, 1188
SaqAI TTAA 4 cut(s) 54, 225, 837, 1221
Sau3AI GATC 4 cut(s) 256, 379, 1183, 1200
Sau96I GGNCC 2 cut(s) 197, 894
ScaI AGTACT 1 cut(s) 578
SchI GAGTC 2 cut(s) 604, 1220
ScrFI CCNGG 1 cut(s) 1070
SduI GDGCHC 2 cut(s) 571, 667
SfaNI GCATC 4 cut(s) 73, 367, 445, 1201
SfcI CTRYAG 3 cut(s) 17, 738, 1140
SgrAI CRCCGGYG 1 cut(s) 144
SinI GGWCC 1 cut(s) 197
SpeI ACTAGT 1 cut(s) 1025
SseBI AGGCCT 1 cut(s) 1068
SsiI CCGC 8 cut(s) 7, 195, 319, 347, 540, 693, 1214, 1230
SspMI CTAG 7 cut(s) 218, 293, 677, 854, 876, 1026, 1263
StuI AGGCCT 1 cut(s) 1068
StyD4I CCNGG 1 cut(s) 1068
TaaI ACNGT 1 cut(s) 928
TaiI ACGT 5 cut(s) 128, 283, 574, 1049, 1210
TaqI TCGA 3 cut(s) 267, 631, 844
TatI WGTACW 1 cut(s) 576
TauI GCSGC 3 cut(s) 10, 321, 542
TfiI GAWTC 1 cut(s) 1193
Tru1I TTAA 4 cut(s) 54, 225, 837, 1221
Tru9I TTAA 4 cut(s) 54, 225, 837, 1221
TscAI CASTG 1 cut(s) 717
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 7 cut(s) 19, 548, 551, 786, 857, 887, 971
Tsp45I GTSAC 1 cut(s) 712
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 717
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 1044
XspI CTAG 7 cut(s) 218, 293, 677, 854, 876, 1026, 1263
ZraI GACGTC 2 cut(s) 126, 281
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.