Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006601

Physical Location & Seq

Genomic Coordinates Forward (+)

41494463 .. 41500407

Gene Structure 5945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTACGACGTCGTATTTGGACCTCAATCGCTGCAGCAGGCCACTCCTCCCGCCCTCTCTCTCCTCTCTCTCCGCCTGTCCCTGCCGTCCCTCCGCCGTTACTCTCCCTCGTTCGCGCGCCAAATTGGGTGGTCTGGATTTCTCCATCGATGGAACTAGACCTGTTGTTGGGCTCGGCCCAACTAGAGGCTTGGGCCGCCCCCGCCGCCGCCTAATCGCCGCCGTGGCTCGAGCCGACCCGGACCATCTCGGCGATGGCAATGCCAAACAGGAAGTCCACAAAGGCCGTGAATTGTCGCTGAATGAAGATGCGGTCGCAGAGAATCAAGAGAAGGCGAATCAGTTAAAAAAAAGGATTGTTTTTGGACTTGGCATTGGATTATCTATTGGAATTGTTGTGTTGGCTGGAGGATGGGTATTCACAACAGTTGTGGCAGCAGCTGTATTTGTTGGCGCACGGGAGTATTTTGAATTGGTTAGGAGTCGTGGAATTACTGCAGGAATGACCCCTCCACCTAGATACGTTTCACGAGTTTGTTCTGTTATTTGTGCTCTCATGCCCTTACTTACCTTGTATCGCGGTCAGATTGATGTTTCTGTAACATCTGCTGCCTTTTTGGTTGCTATGGCATTGCATTTACAGAGAGGAAATCCTCGCTTTGCACAGCTCAGTAGCACCATGTTTGGGCTATTTTATTGTGGATATCTTCCCTGCTTTTGGGTTAAGCTTCGATGTGGTTTAGCGGCCCCAGCCTTAAACACTGGAATTGGAGCATCATGGCCCATCCTTCTCGGTGGACAAGCTCAGTGGACTGTTGGCCTTGTTGCAACCTTGATTTCATTCAGCAGCATTATTGCAGCCGACACTTATGCTTTTATGGGTGGCAAGGTATCTTGGCTCTTGAAATTGCTCTGCAGCACATCTACAATGAAATTTGTTATAGATCTATGGTTGTTCATTTGGAAATTTTCTTTTAAGTTTAATTTTCTTGGTATTCTCAATTCTTATGAAATATGCCATGCAACTGAGGTTCGAGAGTGGGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0055035 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

350

Amino Acids

37.97

Weight (kDa)

9.69

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_1	PF01148	117 - 299	2.8e-16	Cytidylyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45150 AT2G45150 AT2G45150 AT3G60620 AT3G60620
fragaria_vesca	FvH4_7g11110 FvH4_7g11110
malus_domestica	MD02G1210300.v1.1 MD07G1115700.v1.1
prunus_persica	Prupe.2G138300_v2.0.a1 Prupe.2G138300_v2.0.a1
pyrus_communis	pycom02g17210 pycom07g10870
rosa_chinensis	RchiOBHm_Chr1g0349131
rosa_laevigata	RLG00000028603
rosa_multiflora	Rmu_sc0008324.1_g000008 Rmu_sc0012100.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306080
rosa_rugosa	Rorug01G0200400 Rorug01G0200500 Rorug01G0200600
rosa_samantha	Rh1AG218300 Rh1BG183700 Rh1CG202800 Rh1DG213500
rosa_wichuraiana	Rw1G018540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AccII	CGCG	3 cut(s)	118, 120, 582
AcsI	RAATTY	2 cut(s)	935, 968
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	4 cut(s)	170, 188, 687, 720
AgsI	TTSAA	2 cut(s)	473, 907
AluBI	AGCT	4 cut(s)	443, 670, 730, 806
AluI	AGCT	4 cut(s)	443, 670, 730, 806
Alw21I	GWGCWC	1 cut(s)	556
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	7 cut(s)	41, 178, 196, 286, 747, 782, 820
ApeKI	GCWGC	8 cut(s)	33, 36, 437, 440, 611, 849, 860, 918
ApoI	RAATTY	2 cut(s)	935, 968
ArsI	GACNNNNNNTTYG	3 cut(s)	33, 261, 293
AspLEI	GCGC	3 cut(s)	120, 122, 458
AspS9I	GGNCC	6 cut(s)	22, 179, 196, 244, 748, 783
AsuC2I	CCSGG	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	2 cut(s)	22, 244
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	8 cut(s)	20, 48, 449, 452, 598, 861, 872, 930
BccI	CCATC	6 cut(s)	146, 155, 251, 255, 408, 794
BceAI	ACGGC	4 cut(s)	72, 83, 209, 273
BcgI	CGANNNNNNTGC	4 cut(s)	245, 279, 854, 888
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	3 cut(s)	159, 186, 519
BfmI	CTRYAG	3 cut(s)	34, 498, 916
BglI	GCCNNNNNGGC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	946
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	2 cut(s)	22, 244
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	6 cut(s)	22, 179, 196, 244, 748, 783
BmiI	GGNNCC	1 cut(s)	750
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	301, 785
BpmI	CTGGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 188, 687, 720
Bse1I	ACTGG	1 cut(s)	769
Bse3DI	GCAATG	2 cut(s)	268, 632
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	419, 786
BseLI	CCNNNNNNNGG	4 cut(s)	170, 188, 687, 720
BseMI	GCAATG	2 cut(s)	268, 632
BseMII	CTCAG	3 cut(s)	685, 821, 1020
BseNI	ACTGG	1 cut(s)	769
BsePI	GCGCGC	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	38, 55
BseXI	GCAGC	8 cut(s)	20, 48, 449, 452, 598, 861, 872, 930
BseYI	CCCAGC	1 cut(s)	751
Bsh1236I	CGCG	3 cut(s)	118, 120, 582
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	7 cut(s)	43, 180, 198, 288, 749, 784, 822
BshVI	ATCGAT	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	66, 75
BslI	CCNNNNNNNGG	4 cut(s)	170, 188, 687, 720
BsmFI	GGGAC	2 cut(s)	66, 75
BsnI	GGCC	7 cut(s)	43, 180, 198, 288, 749, 784, 822
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	177, 556
Bsp143I	GATC	1 cut(s)	946
BspANI	GGCC	7 cut(s)	43, 180, 198, 288, 749, 784, 822
BspCNI	CTCAG	3 cut(s)	684, 820, 1021
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	3 cut(s)	118, 120, 582
BspLI	GGNNCC	1 cut(s)	750
BspMAI	CTGCAG	3 cut(s)	38, 502, 920
BsrDI	GCAATG	2 cut(s)	268, 632
BsrI	ACTGG	1 cut(s)	769
BssECI	CCNNGG	1 cut(s)	225
BssHII	GCGCGC	1 cut(s)	118
BssMI	GATC	1 cut(s)	946
BssNI	GRCGYC	1 cut(s)	11
BssSI	CACGAG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	430, 817
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	41, 120
BstDEI	CTNAG	3 cut(s)	671, 807, 1029
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	419, 786
BstFNI	CGCG	3 cut(s)	118, 120, 582
BstHHI	GCGC	3 cut(s)	120, 122, 458
BstKTI	GATC	1 cut(s)	949
BstMBI	GATC	1 cut(s)	946
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 204, 207, 227, 752
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	3 cut(s)	34, 498, 916
BstUI	CGCG	3 cut(s)	118, 120, 582
BstV1I	GCAGC	8 cut(s)	20, 48, 449, 452, 598, 861, 872, 930
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	7 cut(s)	43, 180, 198, 288, 749, 784, 822
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	419, 786
BtsIMutI	CAGTG	2 cut(s)	762, 815
Cac8I	GCNNGC	2 cut(s)	41, 120
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	3 cut(s)	120, 122, 458
Cfr13I	GGNCC	6 cut(s)	22, 179, 196, 244, 748, 783
ClaI	ATCGAT	1 cut(s)	150
CspCI	CAANNNNNGTGG	6 cut(s)	112, 147, 414, 449, 791, 826
CviAII	CATG	4 cut(s)	559, 682, 780, 1022
DdeI	CTNAG	3 cut(s)	671, 807, 1029
DpnI	GATC	1 cut(s)	948
DpnII	GATC	1 cut(s)	946
EciI	GGCGGA	2 cut(s)	64, 85
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	22, 244
Eco88I	CYCGRG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	707
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	4 cut(s)	562, 685, 783, 1025
FaqI	GGGAC	2 cut(s)	66, 75
FatI	CATG	4 cut(s)	558, 681, 779, 1021
FauI	CCCGC	2 cut(s)	60, 212
FokI	GGATG	2 cut(s)	426, 773
FriOI	GRGCYC	1 cut(s)	177
FspBI	CTAG	3 cut(s)	159, 186, 519
GlaI	GCGC	3 cut(s)	119, 121, 457
GsaI	CCCAGC	1 cut(s)	755
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	7 cut(s)	43, 180, 198, 288, 749, 784, 822
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	3 cut(s)	120, 122, 458
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	4 cut(s)	562, 685, 783, 1025
Hin6I	GCGC	3 cut(s)	118, 120, 456
HinP1I	GCGC	3 cut(s)	118, 120, 456
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	3 cut(s)	325, 340, 484
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	280, 800, 813
Hpy188I	TCNGA	1 cut(s)	588
Hpy188III	TCNNGA	6 cut(s)	137, 329, 531, 904, 1037, 1050
Hpy8I	GTNNAC	3 cut(s)	280, 800, 813
Hpy99I	CGWCG	2 cut(s)	13, 16
HpyAV	CCTTC	2 cut(s)	328, 800
HpyCH4III	ACNGT	2 cut(s)	430, 817
HpyCH4IV	ACGT	2 cut(s)	11, 525
HpyCH4V	TGCA	8 cut(s)	36, 500, 637, 665, 830, 860, 918, 1025
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 204, 207, 227, 752
HpyF3I	CTNAG	3 cut(s)	671, 807, 1029
HpySE526I	ACGT	2 cut(s)	11, 525
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	4 cut(s)	562, 685, 783, 1025
HspAI	GCGC	3 cut(s)	118, 120, 456
Kzo9I	GATC	1 cut(s)	946
LmnI	GCTCC	1 cut(s)	773
Lsp1109I	GCAGC	8 cut(s)	20, 48, 449, 452, 598, 861, 872, 930
LweI	GCATC	2 cut(s)	301, 785
MaeI	CTAG	3 cut(s)	159, 186, 519
MaeII	ACGT	2 cut(s)	11, 525
MaeIII	GTNAC	2 cut(s)	100, 601
MalI	GATC	1 cut(s)	948
MboI	GATC	1 cut(s)	946
MboII	GAAGA	2 cut(s)	320, 701
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	2 cut(s)	177, 556
MlyI	GAGTC	1 cut(s)	493
MseI	TTAA	5 cut(s)	347, 726, 758, 978, 984
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	242
MvnI	CGCG	3 cut(s)	118, 120, 582
MwoI	GCNNNNNNNGC	5 cut(s)	198, 204, 207, 227, 752
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	946
NlaIII	CATG	4 cut(s)	562, 685, 783, 1025
NlaIV	GGNNCC	1 cut(s)	750
NmeAIII	GCCGAG	2 cut(s)	156, 231
PaeR7I	CTCGAG	1 cut(s)	231
PauI	GCGCGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	325, 340
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	751
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	6 cut(s)	22, 179, 196, 244, 748, 783
PspXI	VCTCGAGB	1 cut(s)	231
PstI	CTGCAG	3 cut(s)	38, 502, 920
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	946
PteI	GCGCGC	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	443
SaqAI	TTAA	5 cut(s)	347, 726, 758, 978, 984
Sau3AI	GATC	1 cut(s)	946
Sau96I	GGNCC	6 cut(s)	22, 179, 196, 244, 748, 783
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	177, 556
SfaNI	GCATC	2 cut(s)	301, 785
SfcI	CTRYAG	3 cut(s)	34, 498, 916
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	2 cut(s)	22, 244
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SspMI	CTAG	3 cut(s)	159, 186, 519
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	430, 817
TaiI	ACGT	2 cut(s)	14, 528
TaqI	TCGA	4 cut(s)	150, 232, 733, 1036
TauI	GCSGC	5 cut(s)	201, 210, 213, 224, 749
TfiI	GAWTC	2 cut(s)	325, 340
Tru1I	TTAA	5 cut(s)	347, 726, 758, 978, 984
Tru9I	TTAA	5 cut(s)	347, 726, 758, 978, 984
TscAI	CASTG	2 cut(s)	769, 815
TseI	GCWGC	8 cut(s)	33, 36, 437, 440, 611, 849, 860, 918
TspDTI	ATGAA	5 cut(s)	321, 831, 947, 949, 1026
TspRI	CASTG	2 cut(s)	769, 815
VpaK11BI	GGWCC	2 cut(s)	22, 244
XapI	RAATTY	2 cut(s)	935, 968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	231
XspI	CTAG	3 cut(s)	159, 186, 519
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.