Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006601

Physical Location & Seq

Genomic Coordinates Reverse (-)

26890866 .. 26896578

Gene Structure 5713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00306080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCTACGACGTCGTATTTGGACCTCAATCGCTGCAGCAGGCCACTCCCGCCTTCTCTCTCCTCTCTCTCCGCCTGTCCCTGCCGACCCTCCGCCGTTACTCTCCCTCGTTCCCGCGCCAAATTGGGTGGTCTAGATTTCTCCATCGATGGAACTCGACCTGTTGTTGGGCTCGGCCCAACTAGAGGCTTCTTGGGCCGCCGCCGCCGCCGCCTAATCGCCGCCGTGGCTCGAGCCGACCCGGACCATCTTGGCGATGGCAATGCCAAACAGCATTTTGGTTTGGCTGTGATTGAGAGTGACATTATGGTGAAGTTGGTGGTGTTAATTTTGGCTTTAGAGCTGAAAGGAACTTGCTTTAATGGCTTAATGTGGTATCGCGGTCAGATTGATGTTTCTGTGACATCTGCTGCCTTTTTGGTTGCTATGGCATTGCATTTACAGAGAGGGAATCCTCGCTTTGCACAGCTCAGTAGCACCATGTTTGGGCTATTTTATTGTGGATATCTTCCCTGCTTTTGGGTTAAGCTTCGATGTGGTTTAGCGGCCCCAGCCTTAAACACTGGAATTGGAGCATCATGGCCCATCCTTTTCGGTGGACAAGCTCAGTGGACAGTTGGTCTTGTTGCTACCTTGATTTCATTCAGCAGCATTATTGCAGCCGACACTTATGCTTTTATGGGTGGCAAGGCTTTTGGTAGGACACCGCTTACTAGTGTTAGTCCAAAGAAGACATGGGAAGGAACAATTGCAGGCTTATGTGGTTGTATTGCCACTACTGTAGTACTATCAAAGATTTTTTGCTGGCCAAAATCTTTGCTAAGTTTTTTTCTTCTTGATATTAATACAGCTCTTCTAATATATTCAATGTATATATCCTTGTGTGTTGTCAGCGCTATAGCTTTTGGGATTCTGAACTTCTTTGGGTCTGTGTTTGGTGATCTTACTGAATCAATGATCAAACGTGATGCGGGCGTAAAGGACTCTGGATCTCTAATACCAGGACATGGTGGAATACTGGATAGAGTGGACAGTTACATATTCACGGGTGCACTTGCATACTCTTTTGTCAAAACCTTCTTGCCTCTATATGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0055035 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

366

Amino Acids

39.24

Weight (kDa)

9.43

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_1	PF01148	118 - 360	6.2e-51	Cytidylyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45150 AT2G45150 AT2G45150 AT3G60620 AT3G60620
fragaria_vesca	FvH4_7g11110 FvH4_7g11110
malus_domestica	MD02G1210300.v1.1 MD07G1115700.v1.1
prunus_persica	Prupe.2G138300_v2.0.a1 Prupe.2G138300_v2.0.a1
pyrus_communis	pycom02g17210 pycom07g10870
rosa_chinensis	RchiOBHm_Chr1g0349131
rosa_laevigata	RLG00000028603
rosa_multiflora	Rmu_sc0008324.1_g000008 Rmu_sc0012100.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306080
rosa_rugosa	Rorug01G0200400 Rorug01G0200500 Rorug01G0200600
rosa_samantha	Rh1AG218300 Rh1BG183700 Rh1CG202800 Rh1DG213500
rosa_wichuraiana	Rw1G018540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	1007
AccII	CGCG	2 cut(s)	117, 381
AclWI	GGATC	1 cut(s)	997
AcoI	YGGCCR	1 cut(s)	806
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	786
AfeI	AGCGCT	1 cut(s)	895
AfiI	CCNNNNNNNGG	6 cut(s)	167, 185, 486, 519, 1007, 1091
AgsI	TTSAA	1 cut(s)	867
AhdI	GACNNNNNGTC	1 cut(s)	618
AhlI	ACTAGT	1 cut(s)	713
AjnI	CCWGG	1 cut(s)	1000
AluBI	AGCT	6 cut(s)	343, 469, 529, 605, 851, 902
AluI	AGCT	6 cut(s)	343, 469, 529, 605, 851, 902
Alw21I	GWGCWC	1 cut(s)	1054
Alw44I	GTGCAC	1 cut(s)	1050
AlwI	GGATC	1 cut(s)	997
Ama87I	CYCGRG	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	895
AoxI	GGCC	6 cut(s)	41, 175, 196, 546, 581, 806
ApaLI	GTGCAC	1 cut(s)	1050
ApeKI	GCWGC	5 cut(s)	33, 36, 410, 648, 659
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AseI	ATTAAT	1 cut(s)	843
AspLEI	GCGC	2 cut(s)	119, 896
AspS9I	GGNCC	6 cut(s)	22, 176, 196, 244, 547, 582
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	322, 950
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	2 cut(s)	22, 244
BaeGI	GKGCMC	1 cut(s)	1054
BalI	TGGCCA	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	1054
BbvI	GCAGC	5 cut(s)	20, 48, 397, 660, 671
BccI	CCATC	5 cut(s)	143, 152, 251, 255, 593
BceAI	ACGGC	2 cut(s)	80, 209
BcgI	CGANNNNNNTGC	4 cut(s)	245, 279, 653, 687
BciT130I	CCWGG	1 cut(s)	1002
BclI	TGATCA	1 cut(s)	957
BcnI	CCSGG	1 cut(s)	242
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	3 cut(s)	134, 183, 714
BfmI	CTRYAG	3 cut(s)	34, 780, 897
BfoI	RGCGCY	1 cut(s)	897
BglI	GCCNNNNNGGC	1 cut(s)	227
BmcAI	AGTACT	1 cut(s)	786
Bme1390I	CCNGG	2 cut(s)	242, 1002
Bme18I	GGWCC	2 cut(s)	22, 244
BmeRI	GACNNNNNGTC	1 cut(s)	618
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	6 cut(s)	22, 176, 196, 244, 547, 582
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	242, 1002
BmsI	GCATC	2 cut(s)	584, 958
BpiI	GAAGAC	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	6 cut(s)	167, 185, 486, 519, 1007, 1091
Bse1I	ACTGG	2 cut(s)	568, 1023
Bse3DI	GCAATG	2 cut(s)	268, 431
BseBI	CCWGG	1 cut(s)	1002
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	6 cut(s)	167, 185, 486, 519, 1007, 1091
BseMI	GCAATG	2 cut(s)	268, 431
BseMII	CTCAG	2 cut(s)	484, 620
BseNI	ACTGG	2 cut(s)	568, 1023
BseRI	GAGGAG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	1054
BseXI	GCAGC	5 cut(s)	20, 48, 397, 660, 671
BseYI	CCCAGC	1 cut(s)	550
Bsh1236I	CGCG	2 cut(s)	117, 381
BshFI	GGCC	6 cut(s)	43, 177, 198, 548, 583, 808
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	1054
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	6 cut(s)	167, 185, 486, 519, 1007, 1091
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	6 cut(s)	43, 177, 198, 548, 583, 808
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	174, 1054
Bsp143I	GATC	3 cut(s)	940, 957, 989
BspANI	GGCC	6 cut(s)	43, 177, 198, 548, 583, 808
BspCNI	CTCAG	2 cut(s)	483, 619
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	117, 381
BspLI	GGNNCC	1 cut(s)	549
BspMAI	CTGCAG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	997
BspQI	GCTCTTC	1 cut(s)	858
BsrDI	GCAATG	2 cut(s)	268, 431
BsrI	ACTGG	2 cut(s)	568, 1023
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	940, 957, 989
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	3 cut(s)	616, 781, 1034
Bst6I	CTCTTC	1 cut(s)	858
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	41, 754, 806, 973
BstDEI	CTNAG	3 cut(s)	470, 606, 821
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	585
BstFNI	CGCG	2 cut(s)	117, 381
BstH2I	RGCGCY	1 cut(s)	897
BstHHI	GCGC	2 cut(s)	119, 896
BstKTI	GATC	3 cut(s)	943, 960, 992
BstMBI	GATC	3 cut(s)	940, 957, 989
BstMWI	GCNNNNNNNGC	8 cut(s)	49, 195, 204, 207, 210, 227, 363, 551
BstNI	CCWGG	1 cut(s)	1002
BstSCI	CCNGG	2 cut(s)	240, 1000
BstSFI	CTRYAG	3 cut(s)	34, 780, 897
BstSLI	GKGCMC	1 cut(s)	1054
BstUI	CGCG	2 cut(s)	117, 381
BstV1I	GCAGC	5 cut(s)	20, 48, 397, 660, 671
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	1 cut(s)	989
BstYI	RGATCY	1 cut(s)	989
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	6 cut(s)	43, 177, 198, 548, 583, 808
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	561, 614
Cac8I	GCNNGC	4 cut(s)	41, 754, 806, 973
CfoI	GCGC	2 cut(s)	119, 896
Cfr13I	GGNCC	6 cut(s)	22, 176, 196, 244, 547, 582
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	785
CspCI	CAANNNNNGTGG	4 cut(s)	109, 144, 590, 625
CviAII	CATG	4 cut(s)	481, 579, 735, 1007
CviQI	GTAC	1 cut(s)	785
DdeI	CTNAG	3 cut(s)	470, 606, 821
DpnI	GATC	3 cut(s)	942, 959, 991
DpnII	GATC	3 cut(s)	940, 957, 989
DriI	GACNNNNNGTC	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	806
Eam1104I	CTCTTC	1 cut(s)	858
Eam1105I	GACNNNNNGTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	858
EciI	GGCGGA	2 cut(s)	61, 82
Eco24I	GRGCYC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	22, 244
Eco47III	AGCGCT	1 cut(s)	895
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	1000
EcoRV	GATATC	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	4 cut(s)	484, 582, 738, 1010
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	4 cut(s)	480, 578, 734, 1006
FauI	CCCGC	3 cut(s)	57, 122, 964
FbaI	TGATCA	1 cut(s)	957
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	3 cut(s)	134, 183, 714
GlaI	GCGC	2 cut(s)	118, 895
GsaI	CCCAGC	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	897
HaeIII	GGCC	6 cut(s)	43, 177, 198, 548, 583, 808
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	2 cut(s)	119, 896
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	4 cut(s)	484, 582, 738, 1010
Hin6I	GCGC	2 cut(s)	117, 894
HinP1I	GCGC	2 cut(s)	117, 894
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	4 cut(s)	451, 910, 950, 983
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	322, 950
Hpy166II	GTNNAC	4 cut(s)	599, 612, 1030, 1052
Hpy188I	TCNGA	2 cut(s)	387, 915
Hpy188III	TCNNGA	3 cut(s)	134, 836, 987
Hpy8I	GTNNAC	4 cut(s)	599, 612, 1030, 1052
Hpy99I	CGWCG	2 cut(s)	13, 16
HpyAV	CCTTC	3 cut(s)	63, 734, 1087
HpyCH4III	ACNGT	3 cut(s)	616, 781, 1034
HpyCH4IV	ACGT	2 cut(s)	11, 964
HpyCH4V	TGCA	7 cut(s)	36, 436, 464, 659, 752, 1052, 1058
HpyF10VI	GCNNNNNNNGC	8 cut(s)	49, 195, 204, 207, 210, 227, 363, 551
HpyF3I	CTNAG	3 cut(s)	470, 606, 821
HpySE526I	ACGT	2 cut(s)	11, 964
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	4 cut(s)	484, 582, 738, 1010
HspAI	GCGC	2 cut(s)	117, 894
Ksp22I	TGATCA	1 cut(s)	957
Kzo9I	GATC	3 cut(s)	940, 957, 989
LguI	GCTCTTC	1 cut(s)	858
LmnI	GCTCC	1 cut(s)	572
Lsp1109I	GCAGC	5 cut(s)	20, 48, 397, 660, 671
LweI	GCATC	2 cut(s)	584, 958
MaeI	CTAG	3 cut(s)	134, 183, 714
MaeII	ACGT	2 cut(s)	11, 964
MaeIII	GTNAC	4 cut(s)	97, 299, 400, 1034
MalI	GATC	3 cut(s)	942, 959, 991
MboI	GATC	3 cut(s)	940, 957, 989
MboII	GAAGA	4 cut(s)	500, 742, 824, 845
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	1 cut(s)	989
MhlI	GDGCHC	2 cut(s)	174, 1054
MlsI	TGGCCA	1 cut(s)	808
MluCI	AATT	4 cut(s)	122, 327, 567, 747
MluNI	TGGCCA	1 cut(s)	808
MlyI	GAGTC	1 cut(s)	977
MnlI	CCTC	8 cut(s)	35, 73, 100, 117, 179, 440, 465, 1095
Mox20I	TGGCCA	1 cut(s)	808
MscI	TGGCCA	1 cut(s)	808
MseI	TTAA	6 cut(s)	326, 360, 368, 525, 557, 843
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	808
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	242, 1002
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	1002
MvnI	CGCG	2 cut(s)	117, 381
MwoI	GCNNNNNNNGC	8 cut(s)	49, 195, 204, 207, 210, 227, 363, 551
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	940, 957, 989
NlaIII	CATG	4 cut(s)	484, 582, 738, 1010
NlaIV	GGNNCC	1 cut(s)	549
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	299, 400
PaeR7I	CTCGAG	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	858
PfeI	GAWTC	3 cut(s)	451, 910, 950
PflMI	CCANNNNNTGG	1 cut(s)	1007
PleI	GAGTC	1 cut(s)	977
PpsI	GAGTC	1 cut(s)	977
PshBI	ATTAAT	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	1000
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	6 cut(s)	22, 176, 196, 244, 547, 582
PspXI	VCTCGAGB	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	989
RsaI	GTAC	1 cut(s)	786
RsaNI	GTAC	1 cut(s)	785
RseI	CAYNNNNRTG	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	6 cut(s)	326, 360, 368, 525, 557, 843
Sau3AI	GATC	3 cut(s)	940, 957, 989
Sau96I	GGNCC	6 cut(s)	22, 176, 196, 244, 547, 582
ScaI	AGTACT	1 cut(s)	786
SchI	GAGTC	1 cut(s)	977
ScrFI	CCNGG	2 cut(s)	242, 1002
SduI	GDGCHC	2 cut(s)	174, 1054
SfaNI	GCATC	2 cut(s)	584, 958
SfcI	CTRYAG	3 cut(s)	34, 780, 897
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	2 cut(s)	22, 244
SlaI	CTCGAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	4 cut(s)	122, 327, 567, 747
SspMI	CTAG	3 cut(s)	134, 183, 714
StyD4I	CCNGG	2 cut(s)	240, 1000
TaaI	ACNGT	3 cut(s)	616, 781, 1034
TaiI	ACGT	2 cut(s)	14, 967
TaqI	TCGA	4 cut(s)	147, 157, 232, 532
TasI	AATT	4 cut(s)	122, 327, 567, 747
TatI	WGTACW	1 cut(s)	784
TauI	GCSGC	7 cut(s)	201, 204, 207, 210, 213, 224, 548
TfiI	GAWTC	3 cut(s)	451, 910, 950
Tru1I	TTAA	6 cut(s)	326, 360, 368, 525, 557, 843
Tru9I	TTAA	6 cut(s)	326, 360, 368, 525, 557, 843
TscAI	CASTG	2 cut(s)	568, 614
TseFI	GTSAC	2 cut(s)	299, 400
TseI	GCWGC	5 cut(s)	33, 36, 410, 648, 659
Tsp45I	GTSAC	2 cut(s)	299, 400
TspDTI	ATGAA	1 cut(s)	630
TspRI	CASTG	2 cut(s)	568, 614
Van91I	CCANNNNNTGG	1 cut(s)	1007
VneI	GTGCAC	1 cut(s)	1050
VpaK11BI	GGWCC	2 cut(s)	22, 244
VspI	ATTAAT	1 cut(s)	843
XbaI	TCTAGA	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	2 cut(s)	254, 732
XhoI	CTCGAG	1 cut(s)	231
XspI	CTAG	3 cut(s)	134, 183, 714
ZraI	GACGTC	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.