Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006601

Physical Location & Seq

Genomic Coordinates Forward (+)

10383021 .. 10389405

Gene Structure 6385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACACCTCCACCTAGATACGTTTCACGAGTTTGCTCAGTTATTTGTGCTCTCATGCCCTTGCTTACCTTGTATCGTGGTCAGATTGATGTTTCTGTGACATCTGCTGCCTTTTTTGTTGCTATGGCATTGCATTTACAGAGAGGGAATCCTCGCTTTGCACAGCTCAGTAGCACTTTGTTTGGGTTATTTTACTGTGGATATCTTCCCTGCTTTTGGGTTAAGCTTCGATGTGGTTTAGCTGCCCCAGCCTTAAACACTGGAATCGGAACATCATGGCCCATCCTTCTTGGTGGACAAGCTCAGTGGACTGTTGGTCTTGTTGCAACCTTGATTTCATTCAGCAGCATTATTGCAGCAGACACTTATGCTTTTATGGGTGGCAAGGCTTTTGGTAGGACGCCACTTACTAGTGTTAGTCCAAAGAAGACATGGGAAGGTACAATTGCAGGCTTATGTGGTTGTATTGCCACTACTATAGTACTATCAAAGATTTTTTGCTGGCCAAAATCTTTGCTGAGTGCTATAGCTTTTGGGATTCTGAACTTCTTTGGGTCTGTCTTTGGTGATCTCACTGAATCAATGATCAAACGTGATGCGGGGGTAAAGGACTCTGGATCTCTGATACCAGGACATGGTGGAATACTGGACAGAGTGGACAGTTACATATTCACTGGTGCACTTGCATACTCTTTTGTCAAAACCTTCTTGCCACTATATGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0055035 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

243

Amino Acids

25.87

Weight (kDa)

9.28

Isoelectric Point (pI)

21.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_1	PF01148	120 - 407	5e-64	Cytidylyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45150 AT2G45150 AT2G45150 AT3G60620 AT3G60620
fragaria_vesca	FvH4_7g11110 FvH4_7g11110
malus_domestica	MD02G1210300.v1.1 MD07G1115700.v1.1
prunus_persica	Prupe.2G138300_v2.0.a1 Prupe.2G138300_v2.0.a1
pyrus_communis	pycom02g17210 pycom07g10870
rosa_chinensis	RchiOBHm_Chr1g0349131
rosa_laevigata	RLG00000028603
rosa_multiflora	Rmu_sc0008324.1_g000008 Rmu_sc0012100.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306080
rosa_rugosa	Rorug01G0200400 Rorug01G0200500 Rorug01G0200600
rosa_samantha	Rh1AG218300 Rh1BG183700 Rh1CG202800 Rh1DG213500
rosa_wichuraiana	Rw1G018540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	635, 719
AciI	CCGC	1 cut(s)	599
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	2 cut(s)	442, 483
AfiI	CCNNNNNNNGG	3 cut(s)	216, 635, 719
AhdI	GACNNNNNGTC	1 cut(s)	315
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	5 cut(s)	166, 226, 242, 302, 530
AluI	AGCT	5 cut(s)	166, 226, 242, 302, 530
Alw21I	GWGCWC	2 cut(s)	52, 682
Alw44I	GTGCAC	1 cut(s)	678
AlwI	GGATC	1 cut(s)	625
AoxI	GGCC	2 cut(s)	278, 503
ApaLI	GTGCAC	1 cut(s)	678
ApeKI	GCWGC	4 cut(s)	107, 242, 345, 356
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	682
BalI	TGGCCA	1 cut(s)	505
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	2 cut(s)	52, 682
BbvI	GCAGC	4 cut(s)	94, 229, 357, 368
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	1 cut(s)	585
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	2 cut(s)	15, 411
BfmI	CTRYAG	2 cut(s)	477, 525
BisI	GCNGC	4 cut(s)	108, 243, 346, 357
BlsI	GCNGC	4 cut(s)	109, 244, 347, 358
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	630
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	586
BpiI	GAAGAC	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 635, 719
Bse1I	ACTGG	3 cut(s)	265, 651, 679
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	3 cut(s)	216, 635, 719
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	4 cut(s)	51, 181, 317, 509
BseNI	ACTGG	3 cut(s)	265, 651, 679
BseSI	GKGCMC	1 cut(s)	682
BseXI	GCAGC	4 cut(s)	94, 229, 357, 368
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	2 cut(s)	280, 505
BsiHKAI	GWGCWC	2 cut(s)	52, 682
BslI	CCNNNNNNNGG	3 cut(s)	216, 635, 719
BsnI	GGCC	2 cut(s)	280, 505
Bsp1286I	GDGCHC	2 cut(s)	52, 682
Bsp143I	GATC	3 cut(s)	568, 585, 617
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	2 cut(s)	280, 505
BspCNI	CTCAG	4 cut(s)	50, 180, 316, 510
BspPI	GGATC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	265, 651, 679
BssMI	GATC	3 cut(s)	568, 585, 617
BssNI	GRCGYC	1 cut(s)	401
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	3 cut(s)	197, 313, 662
BstACI	GRCGYC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	451, 503
BstDEI	CTNAG	4 cut(s)	37, 167, 303, 518
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	571, 588, 620
BstMBI	GATC	3 cut(s)	568, 585, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	2 cut(s)	477, 525
BstSLI	GKGCMC	1 cut(s)	682
BstV1I	GCAGC	4 cut(s)	94, 229, 357, 368
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	280, 505
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	4 cut(s)	258, 311, 573, 672
Cac8I	GCNNGC	2 cut(s)	451, 503
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	441, 482
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviAII	CATG	4 cut(s)	55, 276, 432, 635
CviQI	GTAC	2 cut(s)	441, 482
DdeI	CTNAG	4 cut(s)	37, 167, 303, 518
DpnI	GATC	3 cut(s)	570, 587, 619
DpnII	GATC	3 cut(s)	568, 585, 617
DriI	GACNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	503
Eam1105I	GACNNNNNGTC	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	628
EcoRV	GATATC	1 cut(s)	203
FaeI	CATG	4 cut(s)	58, 279, 435, 638
FatI	CATG	4 cut(s)	54, 275, 431, 634
FauI	CCCGC	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	4 cut(s)	108, 243, 346, 357
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	4 cut(s)	108, 243, 346, 357
FspBI	CTAG	2 cut(s)	15, 411
GluI	GCNGC	4 cut(s)	108, 243, 346, 357
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	280, 505
HgaI	GACGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	4 cut(s)	58, 279, 435, 638
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	5 cut(s)	148, 264, 538, 578, 611
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	4 cut(s)	296, 309, 658, 680
Hpy188I	TCNGA	4 cut(s)	84, 269, 543, 624
Hpy188III	TCNNGA	2 cut(s)	27, 615
Hpy8I	GTNNAC	4 cut(s)	296, 309, 658, 680
HpyAV	CCTTC	3 cut(s)	296, 431, 715
HpyCH4III	ACNGT	3 cut(s)	197, 313, 662
HpyCH4IV	ACGT	2 cut(s)	21, 592
HpyCH4V	TGCA	7 cut(s)	133, 161, 326, 356, 449, 680, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	4 cut(s)	37, 167, 303, 518
HpySE526I	ACGT	2 cut(s)	21, 592
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	4 cut(s)	58, 279, 435, 638
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	568, 585, 617
Lsp1109I	GCAGC	4 cut(s)	94, 229, 357, 368
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	2 cut(s)	15, 411
MaeII	ACGT	2 cut(s)	21, 592
MaeIII	GTNAC	2 cut(s)	97, 662
MalI	GATC	3 cut(s)	570, 587, 619
MboI	GATC	3 cut(s)	568, 585, 617
MboII	GAAGA	2 cut(s)	197, 439
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	2 cut(s)	52, 682
MlsI	TGGCCA	1 cut(s)	505
MluCI	AATT	1 cut(s)	444
MluNI	TGGCCA	1 cut(s)	505
MlyI	GAGTC	1 cut(s)	605
MnlI	CCTC	3 cut(s)	18, 137, 162
Mox20I	TGGCCA	1 cut(s)	505
MscI	TGGCCA	1 cut(s)	505
MseI	TTAA	2 cut(s)	222, 254
Msp20I	TGGCCA	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	630
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	3 cut(s)	568, 585, 617
NlaIII	CATG	4 cut(s)	58, 279, 435, 638
NmuCI	GTSAC	1 cut(s)	97
PfeI	GAWTC	4 cut(s)	148, 264, 538, 578
PflMI	CCANNNNNTGG	2 cut(s)	635, 719
PkrI	GCNGC	4 cut(s)	109, 244, 347, 358
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	617
RsaI	GTAC	2 cut(s)	442, 483
RsaNI	GTAC	2 cut(s)	441, 482
SaqAI	TTAA	2 cut(s)	222, 254
SatI	GCNGC	4 cut(s)	108, 243, 346, 357
Sau3AI	GATC	3 cut(s)	568, 585, 617
Sau96I	GGNCC	1 cut(s)	279
ScaI	AGTACT	1 cut(s)	483
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	2 cut(s)	52, 682
SfaNI	GCATC	1 cut(s)	586
SfcI	CTRYAG	2 cut(s)	477, 525
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	1 cut(s)	599
SspMI	CTAG	2 cut(s)	15, 411
StyD4I	CCNGG	1 cut(s)	628
TaaI	ACNGT	3 cut(s)	197, 313, 662
TaiI	ACGT	2 cut(s)	24, 595
TaqI	TCGA	1 cut(s)	229
TasI	AATT	1 cut(s)	444
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	4 cut(s)	148, 264, 538, 578
Tru1I	TTAA	2 cut(s)	222, 254
Tru9I	TTAA	2 cut(s)	222, 254
TscAI	CASTG	4 cut(s)	265, 311, 580, 679
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	4 cut(s)	107, 242, 345, 356
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	4 cut(s)	265, 311, 580, 679
Van91I	CCANNNNNTGG	2 cut(s)	635, 719
VneI	GTGCAC	1 cut(s)	678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	429
XspI	CTAG	2 cut(s)	15, 411
ZrmI	AGTACT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.