Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006601

Physical Location & Seq

Genomic Coordinates Forward (+)

28002027 .. 28009753

Gene Structure 7727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGGGTTCCTGCGTCTGCTTACGTCAGCACTGCCGCTACGGTGGTTTGGGCGGTGCATTTCAAAAAGGGGTTGTTGCGCCAGGTTTAACGGCGCCGTTTTATCAGTATCACAGGAACAGAAGAAGAGTGGAGGCCTGTGTTTCTACTGGGTTTAAGGAACAAGAGCTGAGGAGCCCGGACCTTGTGGCCTTGGAATATGCTGATCTTAATCTCACCCACAATGTTTCCCAGGAACTGGGTCACGTCAGAATTAGGCAACATGTCAACCCTCTTAGCTCTTCTTTATCTGTGCCTGTGGAAGTGCCTGATTGGAATCAAGTGTTCAGGGACCCAACATTGCCGCTCATGGTGGACATTGGAAGTGGTAGTGGTAGATTTCTCATGTGGCTGGCAAAAAGAAACTTAGTTGTGAGGAATTATTTGGGACTGGAAATAAGGCAGAAACTTGTCAAACGTGCTGATGTCTGGGTTAAAGAGCTGGGTCTTAGTAATATACATTTCATGTATGCAAATGCCACTACTTCATTTAATCAACTGGTGTCTACCTACCCTGGACCACTGATGCTTGTTTCGATCCTGTTCGCACCATGCTGCTTCGCCGGAACCCCTTCTCTCTCCTCCACTCAATCACCGCCGTCCCCTTCTCCACCTCCACCTCCGCCGTCGATTTCCTCTCCTCCTACACCGTCACCTCTCCGATCCAAGACTGGCCCCAACACCTCCACCCAAAGCGCCTCATCTCCCTCATCACCCGCGAGCCCAACCTCGACCTCGCCCTACAAATACCACCTCGCCCAAACCTACCACGCCATCATCCGCCGCCTCCTCCGCTCCCGCGCTTTTCACCACATCGACCCCCTCCTCTCCGACCTCCGCAGCTCCAATCTCCGATGCAGCGAGGACCTCTTCATCTCCCTAATCCGCAACTACGGCGTCGTTTCTCGCCCCAAACTCGCATTCAAGACATTTATCACCATTCCGAAATTCGGCGTACAACGATCTGTGAGGTCGTTGAATGCGCTGCTGAACGCTTTGGTTCAGAATCACGAGTATAGATTGGTTCACTCGGTGTTTCGGAACTGTAGGGAGAGGTTCGGGGTGGCGCCGAATGTGTTTAGTTGTAATATATTGATCAAAGCACTGTGTAAGAGAAATGATTTAGAGACTGCACACCAGGTGCTCGATGAAATGCCTGCGATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCATTTTGGGTGGTTATGTGTCGCGGCGCGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTTTCCTGATGTGACTACATATACTATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTCATGGATGAGATGGAGGATAATGGGGTTGGCGCCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAGAAGAAGTCGGGTGAAGCGGTGAATTTGCTTAATGATATGGTGGAGAAGAGGTATATACCCAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTCTTGTGTTGCAAAGGGAAGGTGGAGGATGCTTGTGTACTGTGGAAGAGGCTTTTGAAGAAGAACTGCACGCCGGATAATGCAGTAGTGGGCACGCTCATATATTGGCTTTGTAAGAAGGGAGAAGTATGGGAAGCCAGGAAATTGTTTGATCAGTTTGAGACGAGTGAGCCTCCAGATGTCATGACTTACAACATGCTTATTTCTGGAATGTGTGGAGTGGGGGAGTTGTGTGAGGCAGGGAGGTTATGGGATGACATGGTGGAGAAAGGATATTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATATTCGAAAAAGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCGGGAGAGGAAGCTGAAATCACTACAGTAATATCTATGGCAATGTCAAGTGGACACATTGACAGTGATTCCTGGGAGCTTTTCCTTACTAAGGTTGTTGGTGATTTGGATTCTGGGGAAAGTGTTCTAAACAGAATACTGCTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0055035 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

714

Amino Acids

79.35

Weight (kDa)

8.4

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_4	PF02390	114 - 181	4.9e-10	Putative methyltransferase
PPR_3	PF13812	357 - 418	1.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	366 - 397	4.2e-08	PPR repeat
PPR_2	PF13041	369 - 416	1.9e-14	PPR repeat family
PPR_2	PF13041	404 - 453	8.1e-13	PPR repeat family
PPR_3	PF13812	428 - 488	9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	436 - 468	7.4e-09	PPR repeat
PPR_2	PF13041	439 - 488	3.4e-16	PPR repeat family
PPR	PF01535	443 - 472	4.2e-08	PPR repeat
PPR_1	PF12854	471 - 503	6.6e-06	PPR repeat
PPR_2	PF13041	475 - 511	3.4e-07	PPR repeat family
PPR	PF01535	477 - 506	4e-06	PPR repeat
PPR_2	PF13041	578 - 627	1.1e-18	PPR repeat family
PPR_1	PF12854	578 - 607	3.8e-07	PPR repeat
PPR_3	PF13812	578 - 625	2.7e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	601 - 658	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	609 - 640	4.6e-09	PPR repeat
PPR_2	PF13041	616 - 662	1e-12	PPR repeat family
PPR	PF01535	616 - 646	3.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45150 AT2G45150 AT2G45150 AT3G60620 AT3G60620
fragaria_vesca	FvH4_7g11110 FvH4_7g11110
malus_domestica	MD02G1210300.v1.1 MD07G1115700.v1.1
prunus_persica	Prupe.2G138300_v2.0.a1 Prupe.2G138300_v2.0.a1
pyrus_communis	pycom02g17210 pycom07g10870
rosa_chinensis	RchiOBHm_Chr1g0349131
rosa_laevigata	RLG00000028603
rosa_multiflora	Rmu_sc0008324.1_g000008 Rmu_sc0012100.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306080
rosa_rugosa	Rorug01G0200400 Rorug01G0200500 Rorug01G0200600
rosa_samantha	Rh1AG218300 Rh1BG183700 Rh1CG202800 Rh1DG213500
rosa_wichuraiana	Rw1G018540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	91, 1102, 1271, 1418
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccBSI	CCGCTC	2 cut(s)	343, 831
AccI	GTMKAC	2 cut(s)	542, 1952
AccII	CGCG	4 cut(s)	755, 837, 1255, 1260
AclWI	GGATC	2 cut(s)	568, 693
AcsI	RAATTY	3 cut(s)	983, 1489, 1840
AcyI	GRCGYC	4 cut(s)	92, 933, 1103, 1419
AdeI	CACNNNGTG	2 cut(s)	1069, 1177
AfaI	GTAC	2 cut(s)	993, 1596
AfiI	CCNNNNNNNGG	4 cut(s)	235, 986, 1199, 2077
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	5 cut(s)	62, 961, 1015, 1451, 1615
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	6 cut(s)	79, 228, 550, 1173, 1694, 2057
AjuI	GAANNNNNNNTTGG	2 cut(s)	941, 973
AluBI	AGCT	9 cut(s)	166, 276, 478, 879, 1369, 1454, 1530, 2000, 2065
AluI	AGCT	9 cut(s)	166, 276, 478, 879, 1369, 1454, 1530, 2000, 2065
Alw21I	GWGCWC	1 cut(s)	1182
Alw26I	GTCTC	2 cut(s)	1157, 1712
AlwI	GGATC	2 cut(s)	568, 693
AlwNI	CAGNNNCTG	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	1987
AoxI	GGCC	3 cut(s)	132, 186, 709
ApeKI	GCWGC	4 cut(s)	591, 876, 894, 1021
ApoI	RAATTY	3 cut(s)	983, 1489, 1840
ArsI	GACNNNNNNTTYG	2 cut(s)	1907, 1939
Asp700I	GAANNNNTTC	2 cut(s)	607, 2109
AspLEI	GCGC	9 cut(s)	79, 94, 734, 839, 1021, 1105, 1260, 1421, 1537
AspS9I	GGNCC	5 cut(s)	178, 328, 554, 710, 901
AsuC2I	CCSGG	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	1926
AvaI	CYCGRG	1 cut(s)	1987
AvaII	GGWCC	4 cut(s)	178, 328, 554, 901
BaeGI	GKGCMC	2 cut(s)	1212, 1652
BanI	GGYRCC	4 cut(s)	91, 1102, 1271, 1418
BanII	GRGCYC	3 cut(s)	176, 761, 1980
BauI	CACGAG	1 cut(s)	1046
Bbv12I	GWGCWC	1 cut(s)	1182
BbvCI	CCTCAGC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	578, 888, 906, 1008
BccI	CCATC	5 cut(s)	818, 1192, 1336, 1340, 1393
BceAI	ACGGC	5 cut(s)	79, 105, 619, 646, 946
BciT130I	CCWGG	6 cut(s)	81, 230, 552, 1175, 1696, 2059
BclI	TGATCA	3 cut(s)	1131, 1708, 1863
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	1157, 1712
BfmI	CTRYAG	2 cut(s)	1081, 2010
BfoI	RGCGCY	5 cut(s)	95, 735, 1106, 1422, 1538
BisI	GCNGC	8 cut(s)	34, 341, 592, 820, 877, 895, 1022, 1256
BlsI	GCNGC	8 cut(s)	35, 342, 593, 821, 878, 896, 1023, 1257
Bme1390I	CCNGG	7 cut(s)	81, 176, 230, 552, 1175, 1696, 2059
Bme18I	GGWCC	4 cut(s)	178, 328, 554, 901
BmeT110I	CYCGRG	1 cut(s)	1987
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	5 cut(s)	178, 328, 554, 710, 901
BmrFI	CCNGG	7 cut(s)	81, 176, 230, 552, 1175, 1696, 2059
BmrI	ACTGGG	2 cut(s)	156, 245
BmsI	GCATC	3 cut(s)	552, 881, 1576
BmuI	ACTGGG	2 cut(s)	156, 245
BplI	GAGNNNNNCTC	2 cut(s)	1714, 1746
BpmI	CTGGAG	1 cut(s)	1716
Bpu10I	CCTNAGC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	1926
BpuMI	CCSGG	1 cut(s)	176
BsaBI	GATNNNNATC	2 cut(s)	207, 312
BsaHI	GRCGYC	4 cut(s)	92, 933, 1103, 1419
BsaJI	CCNNGG	4 cut(s)	189, 228, 550, 2058
BsaXI	ACNNNNNCTCC	4 cut(s)	1457, 1487, 1502, 1532
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 986, 1199, 2077
Bse1I	ACTGG	5 cut(s)	151, 240, 432, 540, 712
Bse3DI	GCAATG	2 cut(s)	335, 2034
Bse8I	GATNNNNATC	2 cut(s)	207, 312
BseBI	CCWGG	6 cut(s)	81, 230, 552, 1175, 1696, 2059
BseDI	CCNNGG	4 cut(s)	189, 228, 550, 2058
BseGI	GGATG	5 cut(s)	813, 1351, 1399, 1591, 1816
BseJI	GATNNNNATC	2 cut(s)	207, 312
BseLI	CCNNNNNNNGG	4 cut(s)	235, 986, 1199, 2077
BseMI	GCAATG	2 cut(s)	335, 2034
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	5 cut(s)	151, 240, 432, 540, 712
BseRI	GAGGAG	5 cut(s)	184, 607, 666, 815, 851
BseSI	GKGCMC	2 cut(s)	1212, 1652
BseXI	GCAGC	4 cut(s)	578, 888, 906, 1008
BseYI	CCCAGC	2 cut(s)	478, 1526
BsgI	GTGCAG	2 cut(s)	1152, 1609
Bsh1236I	CGCG	4 cut(s)	755, 837, 1255, 1260
BshFI	GGCC	3 cut(s)	134, 188, 711
BshNI	GGYRCC	4 cut(s)	91, 1102, 1271, 1418
BsiHKAI	GWGCWC	1 cut(s)	1182
BsiHKCI	CYCGRG	1 cut(s)	1987
BsiSI	CCGG	3 cut(s)	176, 600, 1631
BslFI	GGGAC	3 cut(s)	341, 438, 622
BslI	CCNNNNNNNGG	4 cut(s)	235, 986, 1199, 2077
BsmAI	GTCTC	2 cut(s)	1157, 1712
BsmBI	CGTCTC	1 cut(s)	1712
BsmFI	GGGAC	3 cut(s)	341, 438, 622
BsmI	GAATGC	3 cut(s)	956, 1021, 2140
BsnI	GGCC	3 cut(s)	134, 188, 711
BsoBI	CYCGRG	1 cut(s)	1987
Bsp119I	TTCGAA	1 cut(s)	1926
Bsp1286I	GDGCHC	6 cut(s)	176, 761, 1182, 1212, 1652, 1980
Bsp143I	GATC	7 cut(s)	202, 573, 698, 998, 1131, 1708, 1863
BspANI	GGCC	3 cut(s)	134, 188, 711
BspCNI	CTCAG	1 cut(s)	159
BspFNI	CGCG	4 cut(s)	755, 837, 1255, 1260
BspHI	TCATGA	1 cut(s)	1740
BspPI	GGATC	2 cut(s)	568, 693
BspQI	GCTCTTC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	1926
BspT107I	GGYRCC	4 cut(s)	91, 1102, 1271, 1418
BsrBI	CCGCTC	2 cut(s)	343, 831
BsrDI	GCAATG	2 cut(s)	335, 2034
BsrI	ACTGG	5 cut(s)	151, 240, 432, 540, 712
BssECI	CCNNGG	4 cut(s)	189, 228, 550, 2058
BssMI	GATC	7 cut(s)	202, 573, 698, 998, 1131, 1708, 1863
BssNI	GRCGYC	4 cut(s)	92, 933, 1103, 1419
BssSI	CACGAG	1 cut(s)	1046
BssT1I	CCWWGG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	1046
Bst2UI	CCWGG	6 cut(s)	81, 230, 552, 1175, 1696, 2059
Bst4CI	ACNGT	7 cut(s)	41, 687, 1082, 1143, 1599, 2014, 2051
Bst6I	CTCTTC	5 cut(s)	118, 283, 911, 1508, 1598
BstACI	GRCGYC	4 cut(s)	92, 933, 1103, 1419
BstBI	TTCGAA	1 cut(s)	1926
BstC8I	GCNNGC	5 cut(s)	390, 757, 1194, 1628, 1652
BstDEI	CTNAG	5 cut(s)	167, 272, 403, 485, 2076
BstENI	CCTNNNNNAGG	1 cut(s)	2075
BstF5I	GGATG	5 cut(s)	813, 1351, 1399, 1591, 1816
BstFNI	CGCG	4 cut(s)	755, 837, 1255, 1260
BstH2I	RGCGCY	5 cut(s)	95, 735, 1106, 1422, 1538
BstHHI	GCGC	9 cut(s)	79, 94, 734, 839, 1021, 1105, 1260, 1421, 1537
BstKTI	GATC	7 cut(s)	205, 576, 701, 1001, 1134, 1711, 1866
BstMAI	GTCTC	2 cut(s)	1157, 1712
BstMBI	GATC	7 cut(s)	202, 573, 698, 998, 1131, 1708, 1863
BstMWI	GCNNNNNNNGC	3 cut(s)	828, 930, 1366
BstNI	CCWGG	6 cut(s)	81, 230, 552, 1175, 1696, 2059
BstNSI	RCATGY	2 cut(s)	263, 1756
BstSCI	CCNGG	7 cut(s)	79, 174, 228, 550, 1173, 1694, 2057
BstSFI	CTRYAG	2 cut(s)	1081, 2010
BstSLI	GKGCMC	2 cut(s)	1212, 1652
BstUI	CGCG	4 cut(s)	755, 837, 1255, 1260
BstV1I	GCAGC	4 cut(s)	578, 888, 906, 1008
BsuRI	GGCC	3 cut(s)	134, 188, 711
BtgZI	GCGATG	1 cut(s)	1211
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	5 cut(s)	813, 1351, 1399, 1591, 1816
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	4 cut(s)	28, 557, 1139, 2056
Cac8I	GCNNGC	5 cut(s)	390, 757, 1194, 1628, 1652
CaiI	CAGNNNCTG	1 cut(s)	235
CciI	TCATGA	1 cut(s)	1740
CfoI	GCGC	9 cut(s)	79, 94, 734, 839, 1021, 1105, 1260, 1421, 1537
Cfr13I	GGNCC	5 cut(s)	178, 328, 554, 710, 901
CseI	GACGC	1 cut(s)	922
CsiI	ACCWGGT	1 cut(s)	1173
Csp6I	GTAC	2 cut(s)	992, 1595
CviAII	CATG	9 cut(s)	260, 346, 382, 502, 588, 1390, 1741, 1753, 1816
CviQI	GTAC	2 cut(s)	992, 1595
DdeI	CTNAG	5 cut(s)	167, 272, 403, 485, 2076
DinI	GGCGCC	3 cut(s)	93, 1104, 1420
DpnI	GATC	7 cut(s)	204, 575, 700, 1000, 1133, 1710, 1865
DpnII	GATC	7 cut(s)	202, 573, 698, 998, 1131, 1708, 1863
DraIII	CACNNNGTG	2 cut(s)	1069, 1177
Eam1104I	CTCTTC	5 cut(s)	118, 283, 911, 1508, 1598
EarI	CTCTTC	5 cut(s)	118, 283, 911, 1508, 1598
EciI	GGCGGA	2 cut(s)	648, 806
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	3 cut(s)	176, 761, 1980
Eco47I	GGWCC	4 cut(s)	178, 328, 554, 901
Eco88I	CYCGRG	1 cut(s)	1987
EcoNI	CCTNNNNNAGG	1 cut(s)	2075
EcoO109I	RGGNCCY	2 cut(s)	328, 901
EcoRI	GAATTC	1 cut(s)	1840
EcoRII	CCWGG	6 cut(s)	79, 228, 550, 1173, 1694, 2057
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	3 cut(s)	176, 761, 1980
EgeI	GGCGCC	3 cut(s)	93, 1104, 1420
EheI	GGCGCC	3 cut(s)	93, 1104, 1420
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	1712
FaeI	CATG	9 cut(s)	263, 349, 385, 505, 591, 1393, 1744, 1756, 1819
FaqI	GGGAC	3 cut(s)	341, 438, 622
FatI	CATG	9 cut(s)	259, 345, 381, 501, 587, 1389, 1740, 1752, 1815
FauI	CCCGC	2 cut(s)	760, 842
FbaI	TGATCA	3 cut(s)	1131, 1708, 1863
FblI	GTMKAC	2 cut(s)	542, 1952
Fnu4HI	GCNGC	8 cut(s)	34, 341, 592, 820, 877, 895, 1022, 1256
FokI	GGATG	5 cut(s)	800, 1358, 1406, 1598, 1823
FriOI	GRGCYC	3 cut(s)	176, 761, 1980
Fsp4HI	GCNGC	8 cut(s)	34, 341, 592, 820, 877, 895, 1022, 1256
GlaI	GCGC	9 cut(s)	78, 93, 733, 838, 1020, 1104, 1259, 1420, 1536
GluI	GCNGC	8 cut(s)	34, 341, 592, 820, 877, 895, 1022, 1256
GsaI	CCCAGC	2 cut(s)	482, 1530
GsuI	CTGGAG	1 cut(s)	1716
HaeII	RGCGCY	5 cut(s)	95, 735, 1106, 1422, 1538
HaeIII	GGCC	3 cut(s)	134, 188, 711
HapII	CCGG	3 cut(s)	176, 600, 1631
HgaI	GACGC	1 cut(s)	922
HhaI	GCGC	9 cut(s)	79, 94, 734, 839, 1021, 1105, 1260, 1421, 1537
Hin1I	GRCGYC	4 cut(s)	92, 933, 1103, 1419
Hin1II	CATG	9 cut(s)	263, 349, 385, 505, 591, 1393, 1744, 1756, 1819
Hin6I	GCGC	9 cut(s)	77, 92, 732, 837, 1019, 1103, 1258, 1419, 1535
HinP1I	GCGC	9 cut(s)	77, 92, 732, 837, 1019, 1103, 1258, 1419, 1535
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	1452
HinfI	GANTC	6 cut(s)	313, 1042, 1872, 1985, 2054, 2096
HpaII	CCGG	3 cut(s)	176, 600, 1631
Hpy166II	GTNNAC	7 cut(s)	265, 352, 543, 1063, 1595, 1953, 2039
Hpy188I	TCNGA	8 cut(s)	248, 698, 868, 890, 981, 1041, 1077, 1839
Hpy188III	TCNNGA	7 cut(s)	961, 1046, 1316, 1733, 1741, 1764, 1989
Hpy8I	GTNNAC	7 cut(s)	265, 352, 543, 1063, 1595, 1953, 2039
Hpy99I	CGWCG	2 cut(s)	667, 938
HpyAV	CCTTC	5 cut(s)	618, 651, 1570, 1669, 1888
HpyCH4III	ACNGT	7 cut(s)	41, 687, 1082, 1143, 1599, 2014, 2051
HpyCH4IV	ACGT	3 cut(s)	22, 243, 454
HpyCH4V	TGCA	7 cut(s)	56, 509, 894, 1169, 1569, 1626, 1640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	828, 930, 1366
HpyF3I	CTNAG	5 cut(s)	167, 272, 403, 485, 2076
HpySE526I	ACGT	3 cut(s)	22, 243, 454
Hsp92I	GRCGYC	4 cut(s)	92, 933, 1103, 1419
Hsp92II	CATG	9 cut(s)	263, 349, 385, 505, 591, 1393, 1744, 1756, 1819
HspAI	GCGC	9 cut(s)	77, 92, 732, 837, 1019, 1103, 1258, 1419, 1535
KasI	GGCGCC	3 cut(s)	91, 1102, 1418
KflI	GGGWCCC	1 cut(s)	328
Ksp22I	TGATCA	3 cut(s)	1131, 1708, 1863
Kzo9I	GATC	7 cut(s)	202, 573, 698, 998, 1131, 1708, 1863
LguI	GCTCTTC	1 cut(s)	283
LmnI	GCTCC	4 cut(s)	171, 836, 884, 2062
Lsp1109I	GCAGC	4 cut(s)	578, 888, 906, 1008
LweI	GCATC	3 cut(s)	552, 881, 1576
MabI	ACCWGGT	1 cut(s)	1173
MaeII	ACGT	3 cut(s)	22, 243, 454
MaeIII	GTNAC	6 cut(s)	239, 687, 1219, 1321, 1429, 1982
MalI	GATC	7 cut(s)	204, 575, 700, 1000, 1133, 1710, 1865
MbiI	CCGCTC	2 cut(s)	343, 831
MboI	GATC	7 cut(s)	202, 573, 698, 998, 1131, 1708, 1863
MboII	GAAGA	9 cut(s)	132, 135, 270, 898, 1480, 1525, 1615, 1627, 1630
MhlI	GDGCHC	6 cut(s)	176, 761, 1182, 1212, 1652, 1980
MluCI	AATT	7 cut(s)	249, 415, 983, 1489, 1700, 1840, 1902
Mly113I	GGCGCC	3 cut(s)	92, 1103, 1419
MlyI	GAGTC	1 cut(s)	1979
MmeI	TCCRAC	1 cut(s)	891
MroXI	GAANNNNTTC	2 cut(s)	607, 2109
MseI	TTAA	7 cut(s)	86, 153, 207, 471, 528, 1383, 1497
MspI	CCGG	3 cut(s)	176, 600, 1631
MspR9I	CCNGG	7 cut(s)	81, 176, 230, 552, 1175, 1696, 2059
Mva1269I	GAATGC	3 cut(s)	956, 1021, 2140
MvaI	CCWGG	6 cut(s)	81, 230, 552, 1175, 1696, 2059
MvnI	CGCG	4 cut(s)	755, 837, 1255, 1260
MwoI	GCNNNNNNNGC	3 cut(s)	828, 930, 1366
NarI	GGCGCC	3 cut(s)	92, 1103, 1419
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	7 cut(s)	202, 573, 698, 998, 1131, 1708, 1863
NlaIII	CATG	9 cut(s)	263, 349, 385, 505, 591, 1393, 1744, 1756, 1819
NmeAIII	GCCGAG	1 cut(s)	1511
NmuCI	GTSAC	5 cut(s)	239, 687, 1219, 1321, 1982
NspI	RCATGY	2 cut(s)	263, 1756
NspV	TTCGAA	1 cut(s)	1926
PagI	TCATGA	1 cut(s)	1740
PceI	AGGCCT	1 cut(s)	134
PciI	ACATGT	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	1923
PctI	GAATGC	3 cut(s)	956, 1021, 2140
PdmI	GAANNNNTTC	2 cut(s)	607, 2109
PfeI	GAWTC	5 cut(s)	313, 1042, 1872, 2054, 2096
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	8 cut(s)	35, 342, 593, 821, 878, 896, 1023, 1257
PleI	GAGTC	1 cut(s)	1979
PluTI	GGCGCC	3 cut(s)	95, 1106, 1422
PpsI	GAGTC	1 cut(s)	1979
PpuMI	RGGWCCY	2 cut(s)	328, 901
PscI	ACATGT	1 cut(s)	259
Psp5II	RGGWCCY	2 cut(s)	328, 901
Psp6I	CCWGG	6 cut(s)	79, 228, 550, 1173, 1694, 2057
PspFI	CCCAGC	2 cut(s)	478, 1526
PspGI	CCWGG	6 cut(s)	79, 228, 550, 1173, 1694, 2057
PspPI	GGNCC	5 cut(s)	178, 328, 554, 710, 901
PspPPI	RGGWCCY	2 cut(s)	328, 901
PstNI	CAGNNNCTG	1 cut(s)	235
RsaI	GTAC	2 cut(s)	993, 1596
RsaNI	GTAC	2 cut(s)	992, 1595
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	7 cut(s)	86, 153, 207, 471, 528, 1383, 1497
SatI	GCNGC	8 cut(s)	34, 341, 592, 820, 877, 895, 1022, 1256
Sau3AI	GATC	7 cut(s)	202, 573, 698, 998, 1131, 1708, 1863
Sau96I	GGNCC	5 cut(s)	178, 328, 554, 710, 901
SchI	GAGTC	1 cut(s)	1979
ScrFI	CCNGG	7 cut(s)	81, 176, 230, 552, 1175, 1696, 2059
SduI	GDGCHC	6 cut(s)	176, 761, 1182, 1212, 1652, 1980
SexAI	ACCWGGT	1 cut(s)	1173
SfaNI	GCATC	3 cut(s)	552, 881, 1576
SfcI	CTRYAG	2 cut(s)	1081, 2010
SfoI	GGCGCC	3 cut(s)	93, 1104, 1420
SfuI	TTCGAA	1 cut(s)	1926
SinI	GGWCC	4 cut(s)	178, 328, 554, 901
Sse9I	AATT	7 cut(s)	249, 415, 983, 1489, 1700, 1840, 1902
SseBI	AGGCCT	1 cut(s)	134
SspDI	GGCGCC	3 cut(s)	91, 1102, 1418
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	7 cut(s)	79, 174, 228, 550, 1173, 1694, 2057
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	7 cut(s)	41, 687, 1082, 1143, 1599, 2014, 2051
TaiI	ACGT	3 cut(s)	25, 246, 457
TaqI	TCGA	6 cut(s)	572, 665, 767, 852, 1182, 1926
TasI	AATT	7 cut(s)	249, 415, 983, 1489, 1700, 1840, 1902
TatI	WGTACW	1 cut(s)	1594
TauI	GCSGC	4 cut(s)	36, 343, 822, 1258
TfiI	GAWTC	5 cut(s)	313, 1042, 1872, 2054, 2096
Tru1I	TTAA	7 cut(s)	86, 153, 207, 471, 528, 1383, 1497
Tru9I	TTAA	7 cut(s)	86, 153, 207, 471, 528, 1383, 1497
TscAI	CASTG	4 cut(s)	35, 564, 1146, 2056
TseFI	GTSAC	5 cut(s)	239, 687, 1219, 1321, 1982
TseI	GCWGC	4 cut(s)	591, 876, 894, 1021
Tsp45I	GTSAC	5 cut(s)	239, 687, 1219, 1321, 1982
TspDTI	ATGAA	4 cut(s)	490, 513, 898, 1200
TspRI	CASTG	4 cut(s)	35, 564, 1146, 2056
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	4 cut(s)	178, 328, 554, 901
XagI	CCTNNNNNAGG	1 cut(s)	2075
XapI	RAATTY	3 cut(s)	983, 1489, 1840
XceI	RCATGY	2 cut(s)	263, 1756
XmiI	GTMKAC	2 cut(s)	542, 1952
XmnI	GAANNNNTTC	2 cut(s)	607, 2109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.