RLG00000028603

Phosphatidate

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
24934958 .. 24939988
5031 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028603

Sequence Viewer

Length: 1230 bp
ATGGCTACGACGTCGTATTTGGACCTCAATCGCTGCAGGCCACTCCCGCCCTCTCTATCCTCTCTCTCCGCCTGTCCCTGCCGTCCCTCCGCCGTTACTCTCCCTCGTTCGCGCGCCAAATTGGGTGGTCTAGATTTCTCCGTCGATGGAACTCGACCTGTTGTTGGGCTCGGCTCAACTAGAGGCTTCTTGGGCCGCCACCGCCGCCGCCTAATCGCCGCCGTGGCTCGAGCCGACCCGGACCATCTTGGCGATGGCAATGCCAAACAGGAAGTCCACAAAGGCCATGAATTGTCAGTGAATGAAGATGCGGTCGCAGAGAATCAAGAGAAGGCGAGTCAGTTAAAAAAAAGGATTGTTTTTGGACTCGGCATTGGATTATCTATTGGAATTGTTGTGTTGGCTGGAGGATGGGTATTCACAACAGTTGTGGCAGCAGCTGTATTTGTTGGCGCACGGGAGTATTTTGACTTGGTCAGGAGTCGTGGAATTACTGCAGGAATGACCCCTCCACCTAGATACGTTTCACGAGTTTGTTCCGTTATTTGTGCTCTCATGCCCTTGCTTACCTTGTATCGCGGTCAGATTGATGTTTCTGTGACATCTGCTGCCTTTTTGGTTGCTATGGCATTGCATTTACAGAGAGGGAATCCTCGCTTTGCACAGCTCAGTAGCACCATGTTTGGGCTATTTTATTGTGGATATCTTCCCTGCTTTTGGGTTAAGCTTCGATGCGGTTTAGCAGCCCCAGCCTTAAACACTGGAATTGGAGCATCATGGCCCATCCTTTTCGGTGGACAAGCTCAGTGGACCGTTGGTCTTGTTGCAACCTTGATTTCATTCAGCAGCATTATTGCAGCCGACACTTATGCTTTTATGGGTGGCAAGGCTTTTGGTAGGACACCGCTTACTAGTGTTAGTCCAAAGAAGACATGGGAAGGAACAATTGCAGGCTTATGTGGTTGTATTGCCACTACTGTAGTACTATCAAAGATTTTTTGCTGGCCAAAATCTTTGCTAAGCGCTATAGCTTTTGGGATTCTGAATTTCTTTGGGTCTGTGTTTGGTGATCTTACTGAATCAATGATCAAACGTGATGCGGGCGTAAAGGACTCTGGATCTCTAATACCAGGACATGGTGGAATACTGGATAGAGTAGACAGTTACATATTCACGGGTGCACTTGCATACTCTTTTGTCAAAACCTTCTTGCCTCTATACGGAGTTTGA

Protein Analysis

410

Amino Acids

43.51

Weight (kDa)

9.6

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_1 PF01148 116 - 403 9.8e-64 Cytidylyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 1136
AccI GTMKAC 1 cut(s) 1158
AccII CGCG 3 cut(s) 112, 114, 579
AclWI GGATC 1 cut(s) 1126
AcoI YGGCCR 1 cut(s) 1004
AcsI RAATTY 1 cut(s) 1045
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 984
AfeI AGCGCT 1 cut(s) 1024
AfiI CCNNNNNNNGG 5 cut(s) 164, 684, 717, 1136, 1220
AhdI GACNNNNNGTC 1 cut(s) 816
AhlI ACTAGT 1 cut(s) 911
AjnI CCWGG 1 cut(s) 1129
AluBI AGCT 5 cut(s) 440, 667, 727, 803, 1031
AluI AGCT 5 cut(s) 440, 667, 727, 803, 1031
Alw21I GWGCWC 2 cut(s) 553, 1183
Alw44I GTGCAC 1 cut(s) 1179
AlwI GGATC 1 cut(s) 1126
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 228
Aor51HI AGCGCT 1 cut(s) 1024
AoxI GGCC 5 cut(s) 38, 193, 283, 779, 1004
ApaLI GTGCAC 1 cut(s) 1179
ApeKI GCWGC 7 cut(s) 33, 434, 437, 608, 743, 846, 857
ApoI RAATTY 1 cut(s) 1045
ArsI GACNNNNNNTTYG 3 cut(s) 33, 258, 290
AspLEI GCGC 4 cut(s) 114, 116, 455, 1025
AspS9I GGNCC 5 cut(s) 22, 193, 241, 780, 810
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 1079
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 3 cut(s) 22, 241, 810
BaeGI GKGCMC 1 cut(s) 1183
BalI TGGCCA 1 cut(s) 1006
BanII GRGCYC 1 cut(s) 171
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 2 cut(s) 553, 1183
BbvI GCAGC 7 cut(s) 20, 446, 449, 595, 755, 858, 869
BccI CCATC 5 cut(s) 140, 248, 252, 405, 791
BceAI ACGGC 3 cut(s) 66, 77, 206
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 851, 885
BciT130I CCWGG 1 cut(s) 1131
BclI TGATCA 1 cut(s) 1086
BcnI CCSGG 1 cut(s) 239
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 4 cut(s) 131, 180, 516, 912
BfmI CTRYAG 4 cut(s) 34, 495, 978, 1026
BfoI RGCGCY 1 cut(s) 1026
BglI GCCNNNNNGGC 1 cut(s) 224
BlpI GCTNAGC 1 cut(s) 1019
BmcAI AGTACT 1 cut(s) 984
Bme1390I CCNGG 2 cut(s) 239, 1131
Bme18I GGWCC 3 cut(s) 22, 241, 810
BmeRI GACNNNNNGTC 1 cut(s) 816
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 5 cut(s) 22, 193, 241, 780, 810
BmrFI CCNGG 2 cut(s) 239, 1131
BmsI GCATC 4 cut(s) 298, 722, 782, 1087
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 1019
BpuMI CCSGG 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 684, 717, 1136, 1220
Bse1I ACTGG 2 cut(s) 766, 1152
Bse3DI GCAATG 2 cut(s) 265, 629
BseBI CCWGG 1 cut(s) 1131
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 416, 783
BseLI CCNNNNNNNGG 5 cut(s) 164, 684, 717, 1136, 1220
BseMI GCAATG 2 cut(s) 265, 629
BseMII CTCAG 2 cut(s) 682, 818
BseNI ACTGG 2 cut(s) 766, 1152
BsePI GCGCGC 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 1183
BseXI GCAGC 7 cut(s) 20, 446, 449, 595, 755, 858, 869
BseYI CCCAGC 1 cut(s) 748
Bsh1236I CGCG 3 cut(s) 112, 114, 579
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 5 cut(s) 40, 195, 285, 781, 1006
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 553, 1183
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 2 cut(s) 60, 69
BslI CCNNNNNNNGG 5 cut(s) 164, 684, 717, 1136, 1220
BsmFI GGGAC 2 cut(s) 60, 69
BsnI GGCC 5 cut(s) 40, 195, 285, 781, 1006
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 3 cut(s) 171, 553, 1183
Bsp143I GATC 3 cut(s) 1069, 1086, 1118
Bsp1720I GCTNAGC 1 cut(s) 1019
BspANI GGCC 5 cut(s) 40, 195, 285, 781, 1006
BspCNI CTCAG 2 cut(s) 681, 817
BspFNI CGCG 3 cut(s) 112, 114, 579
BspMAI CTGCAG 2 cut(s) 38, 499
BspPI GGATC 1 cut(s) 1126
BsrDI GCAATG 2 cut(s) 265, 629
BsrI ACTGG 2 cut(s) 766, 1152
BssECI CCNNGG 1 cut(s) 222
BssHII GCGCGC 1 cut(s) 112
BssMI GATC 3 cut(s) 1069, 1086, 1118
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 1131
Bst4CI ACNGT 4 cut(s) 427, 814, 979, 1163
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 5 cut(s) 38, 114, 952, 1004, 1102
BstDEI CTNAG 3 cut(s) 668, 804, 1019
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 416, 783
BstFNI CGCG 3 cut(s) 112, 114, 579
BstH2I RGCGCY 1 cut(s) 1026
BstHHI GCGC 4 cut(s) 114, 116, 455, 1025
BstKTI GATC 3 cut(s) 1072, 1089, 1121
BstMBI GATC 3 cut(s) 1069, 1086, 1118
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 6 cut(s) 46, 192, 201, 204, 224, 749
BstNI CCWGG 1 cut(s) 1131
BstSCI CCNGG 2 cut(s) 237, 1129
BstSFI CTRYAG 4 cut(s) 34, 495, 978, 1026
BstSLI GKGCMC 1 cut(s) 1183
BstUI CGCG 3 cut(s) 112, 114, 579
BstV1I GCAGC 7 cut(s) 20, 446, 449, 595, 755, 858, 869
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 1118
BstYI RGATCY 1 cut(s) 1118
BsuRI GGCC 5 cut(s) 40, 195, 285, 781, 1006
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 416, 783
BtsIMutI CAGTG 3 cut(s) 303, 759, 812
Cac8I GCNNGC 5 cut(s) 38, 114, 952, 1004, 1102
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 4 cut(s) 114, 116, 455, 1025
Cfr13I GGNCC 5 cut(s) 22, 193, 241, 780, 810
Csp6I GTAC 1 cut(s) 983
CspCI CAANNNNNGTGG 6 cut(s) 106, 141, 411, 446, 788, 823
CviAII CATG 6 cut(s) 287, 556, 679, 777, 933, 1136
CviQI GTAC 1 cut(s) 983
DdeI CTNAG 3 cut(s) 668, 804, 1019
DpnI GATC 3 cut(s) 1071, 1088, 1120
DpnII GATC 3 cut(s) 1069, 1086, 1118
DriI GACNNNNNGTC 1 cut(s) 816
EaeI YGGCCR 1 cut(s) 1004
Eam1105I GACNNNNNGTC 1 cut(s) 816
EciI GGCGGA 2 cut(s) 58, 79
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 3 cut(s) 22, 241, 810
Eco47III AGCGCT 1 cut(s) 1024
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 1129
EcoRV GATATC 1 cut(s) 704
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 6 cut(s) 290, 559, 682, 780, 936, 1139
FaqI GGGAC 2 cut(s) 60, 69
FatI CATG 6 cut(s) 286, 555, 678, 776, 932, 1135
FauI CCCGC 2 cut(s) 54, 1093
FbaI TGATCA 1 cut(s) 1086
FblI GTMKAC 1 cut(s) 1158
FokI GGATG 2 cut(s) 423, 770
FriOI GRGCYC 1 cut(s) 171
FspBI CTAG 4 cut(s) 131, 180, 516, 912
GlaI GCGC 4 cut(s) 113, 115, 454, 1024
GsaI CCCAGC 1 cut(s) 752
GsuI CTGGAG 1 cut(s) 426
HaeII RGCGCY 1 cut(s) 1026
HaeIII GGCC 5 cut(s) 40, 195, 285, 781, 1006
HapII CCGG 1 cut(s) 239
HhaI GCGC 4 cut(s) 114, 116, 455, 1025
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 6 cut(s) 290, 559, 682, 780, 936, 1139
Hin6I GCGC 4 cut(s) 112, 114, 453, 1023
HinP1I GCGC 4 cut(s) 112, 114, 453, 1023
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 8 cut(s) 322, 337, 366, 481, 649, 1039, 1079, 1112
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 1079
Hpy166II GTNNAC 5 cut(s) 277, 797, 810, 1159, 1181
Hpy188I TCNGA 2 cut(s) 585, 1044
Hpy188III TCNNGA 5 cut(s) 131, 326, 478, 528, 1116
Hpy8I GTNNAC 5 cut(s) 277, 797, 810, 1159, 1181
Hpy99I CGWCG 3 cut(s) 13, 16, 146
HpyAV CCTTC 3 cut(s) 325, 932, 1216
HpyCH4III ACNGT 4 cut(s) 427, 814, 979, 1163
HpyCH4IV ACGT 3 cut(s) 11, 522, 1093
HpyCH4V TGCA 9 cut(s) 36, 497, 634, 662, 827, 857, 950, 1181, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 192, 201, 204, 224, 749
HpyF3I CTNAG 3 cut(s) 668, 804, 1019
HpySE526I ACGT 3 cut(s) 11, 522, 1093
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 6 cut(s) 290, 559, 682, 780, 936, 1139
HspAI GCGC 4 cut(s) 112, 114, 453, 1023
Ksp22I TGATCA 1 cut(s) 1086
Kzo9I GATC 3 cut(s) 1069, 1086, 1118
LmnI GCTCC 1 cut(s) 770
Lsp1109I GCAGC 7 cut(s) 20, 446, 449, 595, 755, 858, 869
LweI GCATC 4 cut(s) 298, 722, 782, 1087
MaeI CTAG 4 cut(s) 131, 180, 516, 912
MaeII ACGT 3 cut(s) 11, 522, 1093
MaeIII GTNAC 3 cut(s) 94, 598, 1163
MalI GATC 3 cut(s) 1071, 1088, 1120
MboI GATC 3 cut(s) 1069, 1086, 1118
MboII GAAGA 3 cut(s) 317, 698, 940
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 1 cut(s) 1118
MhlI GDGCHC 3 cut(s) 171, 553, 1183
MlsI TGGCCA 1 cut(s) 1006
MluCI AATT 7 cut(s) 119, 290, 390, 489, 765, 945, 1045
MluNI TGGCCA 1 cut(s) 1006
MlyI GAGTC 4 cut(s) 346, 360, 490, 1106
Mox20I TGGCCA 1 cut(s) 1006
MscI TGGCCA 1 cut(s) 1006
MseI TTAA 3 cut(s) 344, 723, 755
Msp20I TGGCCA 1 cut(s) 1006
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 239, 1131
MunI CAATTG 1 cut(s) 945
MvaI CCWGG 1 cut(s) 1131
MvnI CGCG 3 cut(s) 112, 114, 579
MwoI GCNNNNNNNGC 6 cut(s) 46, 192, 201, 204, 224, 749
NciI CCSGG 1 cut(s) 239
NdeII GATC 3 cut(s) 1069, 1086, 1118
NlaIII CATG 6 cut(s) 290, 559, 682, 780, 936, 1139
NmeAIII GCCGAG 2 cut(s) 150, 348
NmuCI GTSAC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 228
PauI GCGCGC 1 cut(s) 112
PfeI GAWTC 4 cut(s) 322, 649, 1039, 1079
PflFI GACNNNGTC 1 cut(s) 473
PflMI CCANNNNNTGG 1 cut(s) 1136
PleI GAGTC 4 cut(s) 345, 360, 489, 1106
PpsI GAGTC 4 cut(s) 345, 360, 489, 1106
Psp6I CCWGG 1 cut(s) 1129
PspFI CCCAGC 1 cut(s) 748
PspGI CCWGG 1 cut(s) 1129
PspPI GGNCC 5 cut(s) 22, 193, 241, 780, 810
PspXI VCTCGAGB 1 cut(s) 228
PstI CTGCAG 2 cut(s) 38, 499
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 1118
PsyI GACNNNGTC 1 cut(s) 473
PteI GCGCGC 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 984
RsaNI GTAC 1 cut(s) 983
SaqAI TTAA 3 cut(s) 344, 723, 755
Sau3AI GATC 3 cut(s) 1069, 1086, 1118
Sau96I GGNCC 5 cut(s) 22, 193, 241, 780, 810
ScaI AGTACT 1 cut(s) 984
SchI GAGTC 4 cut(s) 346, 360, 490, 1106
ScrFI CCNGG 2 cut(s) 239, 1131
SduI GDGCHC 3 cut(s) 171, 553, 1183
SfaNI GCATC 4 cut(s) 298, 722, 782, 1087
SfcI CTRYAG 4 cut(s) 34, 495, 978, 1026
Sfr274I CTCGAG 1 cut(s) 228
SinI GGWCC 3 cut(s) 22, 241, 810
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
SpeI ACTAGT 1 cut(s) 911
Sse9I AATT 7 cut(s) 119, 290, 390, 489, 765, 945, 1045
SspMI CTAG 4 cut(s) 131, 180, 516, 912
StyD4I CCNGG 2 cut(s) 237, 1129
TaaI ACNGT 4 cut(s) 427, 814, 979, 1163
TaiI ACGT 3 cut(s) 14, 525, 1096
TaqI TCGA 4 cut(s) 144, 154, 229, 730
TasI AATT 7 cut(s) 119, 290, 390, 489, 765, 945, 1045
TatI WGTACW 1 cut(s) 982
TauI GCSGC 4 cut(s) 198, 207, 210, 221
TfiI GAWTC 4 cut(s) 322, 649, 1039, 1079
Tru1I TTAA 3 cut(s) 344, 723, 755
Tru9I TTAA 3 cut(s) 344, 723, 755
TscAI CASTG 3 cut(s) 303, 766, 812
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 7 cut(s) 33, 434, 437, 608, 743, 846, 857
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 3 cut(s) 303, 318, 828
TspGWI ACGGA 2 cut(s) 130, 529
TspRI CASTG 3 cut(s) 303, 766, 812
Tth111I GACNNNGTC 1 cut(s) 473
Van91I CCANNNNNTGG 1 cut(s) 1136
VneI GTGCAC 1 cut(s) 1179
VpaK11BI GGWCC 3 cut(s) 22, 241, 810
XapI RAATTY 1 cut(s) 1045
XbaI TCTAGA 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 930
XhoI CTCGAG 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 1158
XspI CTAG 4 cut(s) 131, 180, 516, 912
ZraI GACGTC 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.