RchiOBHm_Chr1g0349131

Phosphatidate

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
42164545 .. 42170416
5872 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57511

Sequence Viewer

Length: 1230 bp
ATGGCTACGACGTCGTATTTGGACCTCAATCGCTGCAGCAGGCCACTCCCGCCCTCTCTCTCCTCTCTCTCCGCCTGTCCCTGCCGTCCCTCCGCCGTTACTCTCCCTCGTTCGCGCGCCAAATTGGGTGGTCTAGATTTCTCCATCGATGGAACTAGACCTGTTGTTGGGCTCGGCCCAACTAGAGGCTTGTGCCGCCCCCGCCGCCGCCTAATCGCTGCCGTGGCTCGAGCCGACCCGGACCATCTCGGCGATGGCAATGCCAAACAGGAAGTCCACAAAGGCCGTGAATTGTCGCTGAATGAAGATGCGGTCGCAGAGAATCAAGAGAAGGCGAATCAGTTAAAAAAAAGGATTGTTTTTGGACTTGGCATTGGATTATCTATTGGAATTGTTGTGTTGGCTGGAGGATGGGTATTCACAACAGTTGTGGCAGCAGCTGTATTTGTTGGCGCACGGGAGTATTTTGAATTGGTTAGGAGTCGTGGAATTACTGCAGGAATGACCCCTCCACCTAGATACGTTTCACGAGTTTGTTCTGTTATTTGTGCTCTCATGCCCTTACTTACCTTGTATCGCGGTCAGATTGATGTTTCTGTGACATCTGCTGCCTTTTTGGTTGCTATGGCATTGCATTTACAGAGAGGAAATCCTCGCTTTGCACAGCTCAGTAGCACCATGTTTGGGCTATTTTATTGTGGATATCTTCCCTGCTTTTGGGTTAAGCTTCGATGTGGTTTAGCGGCCCCAGCCTTAAACACTGGAATTGGAGCATCATGGCCCATCCTTCTCGGTGGACAAGCTCAGTGGACCGTTGGCCTTGTTGCAACCTTGATTTCATTCAGCAGCATTATTGCAGCCGACACTTATGCTTTTATGGGTGGCAAGGCTTTTGGTAGGACACCGCTTACTAGTGTTAGTCCAAAGAAGACATGGGAAGGAACAATTGCAGGCTTATGTGGTTGTATTGCCACTACTGTAGTACTATCAAAGATTTTTTGCTGGCCAAAATCTTTGCTAAGCTCTATAGCTTTTGGGATTCTGAACTTCTTTGGGTCTGTCTTTGGCGATCTTACTGAATCAATGATCAAACGTGATGCGGGCGTAAAGGACTCTGGATCTCTAATACCAGGACATGGTGGAATACTGGATAGAGTGGACAGTTACATATTCACGGGCGCACTTGCATACTCTTTTGTCAAAACCTTCTTGCCTCTATATGGAGTTTGA

Protein Analysis

409

Amino Acids

43.54

Weight (kDa)

9.61

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_1 PF01148 116 - 403 1.2e-63 Cytidylyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 1136
AccII CGCG 3 cut(s) 115, 117, 579
AclWI GGATC 1 cut(s) 1126
AcoI YGGCCR 1 cut(s) 1004
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 984
AfiI CCNNNNNNNGG 6 cut(s) 167, 185, 684, 717, 1136, 1220
AgsI TTSAA 1 cut(s) 470
AhlI ACTAGT 1 cut(s) 911
AjnI CCWGG 1 cut(s) 1129
AluBI AGCT 6 cut(s) 440, 667, 727, 803, 1023, 1031
AluI AGCT 6 cut(s) 440, 667, 727, 803, 1023, 1031
Alw21I GWGCWC 1 cut(s) 553
AlwI GGATC 1 cut(s) 1126
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 7 cut(s) 41, 175, 283, 744, 779, 817, 1004
ApeKI GCWGC 8 cut(s) 33, 36, 218, 434, 437, 608, 846, 857
ArsI GACNNNNNNTTYG 3 cut(s) 33, 258, 290
AspLEI GCGC 4 cut(s) 117, 119, 455, 1181
AspS9I GGNCC 6 cut(s) 22, 176, 241, 745, 780, 810
AsuC2I CCSGG 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 3 cut(s) 22, 241, 810
BalI TGGCCA 1 cut(s) 1006
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 8 cut(s) 20, 48, 205, 446, 449, 595, 858, 869
BccI CCATC 6 cut(s) 143, 152, 248, 252, 405, 791
BceAI ACGGC 4 cut(s) 69, 80, 206, 270
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 851, 885
BciT130I CCWGG 1 cut(s) 1131
BclI TGATCA 1 cut(s) 1086
BcnI CCSGG 1 cut(s) 239
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 5 cut(s) 134, 156, 183, 516, 912
BfmI CTRYAG 4 cut(s) 34, 495, 978, 1026
BlpI GCTNAGC 1 cut(s) 1019
BmcAI AGTACT 1 cut(s) 984
Bme1390I CCNGG 2 cut(s) 239, 1131
Bme18I GGWCC 3 cut(s) 22, 241, 810
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 6 cut(s) 22, 176, 241, 745, 780, 810
BmiI GGNNCC 1 cut(s) 747
BmrFI CCNGG 2 cut(s) 239, 1131
BmsI GCATC 3 cut(s) 298, 782, 1087
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 1019
BpuMI CCSGG 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 6 cut(s) 167, 185, 684, 717, 1136, 1220
Bse1I ACTGG 2 cut(s) 766, 1152
Bse3DI GCAATG 2 cut(s) 265, 629
BseBI CCWGG 1 cut(s) 1131
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 416, 783
BseLI CCNNNNNNNGG 6 cut(s) 167, 185, 684, 717, 1136, 1220
BseMI GCAATG 2 cut(s) 265, 629
BseMII CTCAG 2 cut(s) 682, 818
BseNI ACTGG 2 cut(s) 766, 1152
BsePI GCGCGC 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 52
BseXI GCAGC 8 cut(s) 20, 48, 205, 446, 449, 595, 858, 869
BseYI CCCAGC 1 cut(s) 748
Bsh1236I CGCG 3 cut(s) 115, 117, 579
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 7 cut(s) 43, 177, 285, 746, 781, 819, 1006
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 2 cut(s) 63, 72
BslI CCNNNNNNNGG 6 cut(s) 167, 185, 684, 717, 1136, 1220
BsmFI GGGAC 2 cut(s) 63, 72
BsnI GGCC 7 cut(s) 43, 177, 285, 746, 781, 819, 1006
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 174, 553
Bsp143I GATC 3 cut(s) 1069, 1086, 1118
Bsp1720I GCTNAGC 1 cut(s) 1019
BspANI GGCC 7 cut(s) 43, 177, 285, 746, 781, 819, 1006
BspCNI CTCAG 2 cut(s) 681, 817
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 3 cut(s) 115, 117, 579
BspLI GGNNCC 1 cut(s) 747
BspMAI CTGCAG 2 cut(s) 38, 499
BspPI GGATC 1 cut(s) 1126
BsrDI GCAATG 2 cut(s) 265, 629
BsrI ACTGG 2 cut(s) 766, 1152
BssECI CCNNGG 1 cut(s) 222
BssHII GCGCGC 1 cut(s) 115
BssMI GATC 3 cut(s) 1069, 1086, 1118
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 1131
Bst4CI ACNGT 4 cut(s) 427, 814, 979, 1163
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 5 cut(s) 41, 117, 952, 1004, 1102
BstDEI CTNAG 3 cut(s) 668, 804, 1019
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 416, 783
BstFNI CGCG 3 cut(s) 115, 117, 579
BstHHI GCGC 4 cut(s) 117, 119, 455, 1181
BstKTI GATC 3 cut(s) 1072, 1089, 1121
BstMBI GATC 3 cut(s) 1069, 1086, 1118
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 6 cut(s) 49, 195, 201, 204, 224, 749
BstNI CCWGG 1 cut(s) 1131
BstSCI CCNGG 2 cut(s) 237, 1129
BstSFI CTRYAG 4 cut(s) 34, 495, 978, 1026
BstUI CGCG 3 cut(s) 115, 117, 579
BstV1I GCAGC 8 cut(s) 20, 48, 205, 446, 449, 595, 858, 869
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 1118
BstYI RGATCY 1 cut(s) 1118
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 7 cut(s) 43, 177, 285, 746, 781, 819, 1006
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 416, 783
BtsIMutI CAGTG 2 cut(s) 759, 812
Cac8I GCNNGC 5 cut(s) 41, 117, 952, 1004, 1102
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 4 cut(s) 117, 119, 455, 1181
Cfr13I GGNCC 6 cut(s) 22, 176, 241, 745, 780, 810
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 983
CspCI CAANNNNNGTGG 6 cut(s) 109, 144, 411, 446, 788, 823
CviAII CATG 5 cut(s) 556, 679, 777, 933, 1136
CviQI GTAC 1 cut(s) 983
DdeI CTNAG 3 cut(s) 668, 804, 1019
DpnI GATC 3 cut(s) 1071, 1088, 1120
DpnII GATC 3 cut(s) 1069, 1086, 1118
EaeI YGGCCR 1 cut(s) 1004
EciI GGCGGA 2 cut(s) 61, 82
Eco24I GRGCYC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 3 cut(s) 22, 241, 810
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 1129
EcoRV GATATC 1 cut(s) 704
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 5 cut(s) 559, 682, 780, 936, 1139
FaqI GGGAC 2 cut(s) 63, 72
FatI CATG 5 cut(s) 555, 678, 776, 932, 1135
FauI CCCGC 3 cut(s) 57, 209, 1093
FbaI TGATCA 1 cut(s) 1086
FokI GGATG 2 cut(s) 423, 770
FriOI GRGCYC 1 cut(s) 174
FspBI CTAG 5 cut(s) 134, 156, 183, 516, 912
GlaI GCGC 4 cut(s) 116, 118, 454, 1180
GsaI CCCAGC 1 cut(s) 752
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 7 cut(s) 43, 177, 285, 746, 781, 819, 1006
HapII CCGG 1 cut(s) 239
HhaI GCGC 4 cut(s) 117, 119, 455, 1181
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 5 cut(s) 559, 682, 780, 936, 1139
Hin6I GCGC 4 cut(s) 115, 117, 453, 1179
HinP1I GCGC 4 cut(s) 115, 117, 453, 1179
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 6 cut(s) 322, 337, 481, 1039, 1079, 1112
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 4 cut(s) 277, 797, 810, 1159
Hpy188I TCNGA 2 cut(s) 585, 1044
Hpy188III TCNNGA 4 cut(s) 134, 326, 528, 1116
Hpy8I GTNNAC 4 cut(s) 277, 797, 810, 1159
Hpy99I CGWCG 2 cut(s) 13, 16
HpyAV CCTTC 4 cut(s) 325, 797, 932, 1216
HpyCH4III ACNGT 4 cut(s) 427, 814, 979, 1163
HpyCH4IV ACGT 3 cut(s) 11, 522, 1093
HpyCH4V TGCA 8 cut(s) 36, 497, 634, 662, 827, 857, 950, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 195, 201, 204, 224, 749
HpyF3I CTNAG 3 cut(s) 668, 804, 1019
HpySE526I ACGT 3 cut(s) 11, 522, 1093
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 5 cut(s) 559, 682, 780, 936, 1139
HspAI GCGC 4 cut(s) 115, 117, 453, 1179
Ksp22I TGATCA 1 cut(s) 1086
Kzo9I GATC 3 cut(s) 1069, 1086, 1118
LmnI GCTCC 1 cut(s) 770
Lsp1109I GCAGC 8 cut(s) 20, 48, 205, 446, 449, 595, 858, 869
LweI GCATC 3 cut(s) 298, 782, 1087
MaeI CTAG 5 cut(s) 134, 156, 183, 516, 912
MaeII ACGT 3 cut(s) 11, 522, 1093
MaeIII GTNAC 3 cut(s) 97, 598, 1163
MalI GATC 3 cut(s) 1071, 1088, 1120
MboI GATC 3 cut(s) 1069, 1086, 1118
MboII GAAGA 3 cut(s) 317, 698, 940
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 1 cut(s) 1118
MhlI GDGCHC 2 cut(s) 174, 553
MlsI TGGCCA 1 cut(s) 1006
MluCI AATT 7 cut(s) 122, 290, 390, 470, 489, 765, 945
MluNI TGGCCA 1 cut(s) 1006
MlyI GAGTC 2 cut(s) 490, 1106
Mox20I TGGCCA 1 cut(s) 1006
MscI TGGCCA 1 cut(s) 1006
MseI TTAA 3 cut(s) 344, 723, 755
Msp20I TGGCCA 1 cut(s) 1006
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 239, 1131
MunI CAATTG 1 cut(s) 945
MvaI CCWGG 1 cut(s) 1131
MvnI CGCG 3 cut(s) 115, 117, 579
MwoI GCNNNNNNNGC 6 cut(s) 49, 195, 201, 204, 224, 749
NciI CCSGG 1 cut(s) 239
NdeII GATC 3 cut(s) 1069, 1086, 1118
NlaIII CATG 5 cut(s) 559, 682, 780, 936, 1139
NlaIV GGNNCC 1 cut(s) 747
NmeAIII GCCGAG 2 cut(s) 153, 228
NmuCI GTSAC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 228
PauI GCGCGC 1 cut(s) 115
PfeI GAWTC 4 cut(s) 322, 337, 1039, 1079
PflMI CCANNNNNTGG 1 cut(s) 1136
PleI GAGTC 2 cut(s) 489, 1106
PpsI GAGTC 2 cut(s) 489, 1106
Psp6I CCWGG 1 cut(s) 1129
PspFI CCCAGC 1 cut(s) 748
PspGI CCWGG 1 cut(s) 1129
PspN4I GGNNCC 1 cut(s) 747
PspPI GGNCC 6 cut(s) 22, 176, 241, 745, 780, 810
PspXI VCTCGAGB 1 cut(s) 228
PstI CTGCAG 2 cut(s) 38, 499
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 1118
PteI GCGCGC 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 984
RsaNI GTAC 1 cut(s) 983
SaqAI TTAA 3 cut(s) 344, 723, 755
Sau3AI GATC 3 cut(s) 1069, 1086, 1118
Sau96I GGNCC 6 cut(s) 22, 176, 241, 745, 780, 810
ScaI AGTACT 1 cut(s) 984
SchI GAGTC 2 cut(s) 490, 1106
ScrFI CCNGG 2 cut(s) 239, 1131
SduI GDGCHC 2 cut(s) 174, 553
SfaNI GCATC 3 cut(s) 298, 782, 1087
SfcI CTRYAG 4 cut(s) 34, 495, 978, 1026
Sfr274I CTCGAG 1 cut(s) 228
SinI GGWCC 3 cut(s) 22, 241, 810
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
SpeI ACTAGT 1 cut(s) 911
Sse9I AATT 7 cut(s) 122, 290, 390, 470, 489, 765, 945
SspMI CTAG 5 cut(s) 134, 156, 183, 516, 912
StyD4I CCNGG 2 cut(s) 237, 1129
TaaI ACNGT 4 cut(s) 427, 814, 979, 1163
TaiI ACGT 3 cut(s) 14, 525, 1096
TaqI TCGA 3 cut(s) 147, 229, 730
TasI AATT 7 cut(s) 122, 290, 390, 470, 489, 765, 945
TatI WGTACW 1 cut(s) 982
TauI GCSGC 4 cut(s) 198, 207, 210, 746
TfiI GAWTC 4 cut(s) 322, 337, 1039, 1079
Tru1I TTAA 3 cut(s) 344, 723, 755
Tru9I TTAA 3 cut(s) 344, 723, 755
TscAI CASTG 2 cut(s) 766, 812
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 8 cut(s) 33, 36, 218, 434, 437, 608, 846, 857
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 2 cut(s) 318, 828
TspRI CASTG 2 cut(s) 766, 812
Van91I CCANNNNNTGG 1 cut(s) 1136
VpaK11BI GGWCC 3 cut(s) 22, 241, 810
XbaI TCTAGA 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 930
XhoI CTCGAG 1 cut(s) 228
XspI CTAG 5 cut(s) 134, 156, 183, 516, 912
ZraI GACGTC 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.