pycom07g10870

Phosphatidate

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
11213588 .. 11218748
5161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10870.4

Sequence Viewer

Length: 1230 bp
ATGGCAACGACGTCGTATTCCCAACTCCACCGGTGCACTCCACTCTCACTCTCCCTCCCTTCCCCTTGCTCTTGTCCCTGCCGCCCCTCGCCCTCAAGAACCCTAGTATTTACTCGTACGTCGGCCAAATTGGGTAATTTGGATCTCTTTTTCGATGGGAATAGACGTCCTCTGGGGTTGGGCCGGAATGGAATTTTGGCGCGCCGCCGTGTACTTACGGCTGTGGCTCGGGCGGAGCCGGAGAACCTTGGCGATGACAATGCCAACCAGGAAGTCCACAAAGGCCGTAAATTGTCATTGAATGAGGATGTAGTCTCAGAGCATCAACAGAAAGCAAGTCAGTTAAAGAAAAGAATTTTCTTTGGACTTGGTATTGGGTTATCTGTTGGCGTTGTTGTGTTGGCTGGAGGATGGGTGTTTGCAGCGGCTGTGGCGGCAGCTGTTTTTGTTGGTGCACGGGAGTACTTTGAATTGGTTAGGAGTCATGGAATCACTGAAGGAATGACACCTCCACCTCGATATGTATCACGAGTTTGCTCTGTAATTTGTGCTCTCATGCCTCTAGTAACCTTGTATCGCGGACAGATTGATGTTTCTGTCACATCTGCTTCCTTTTTTGTTGCTATGGCGTTGCTTTTACAGAGAGGAAATCCTCGCTTTGCACAGCTTAGCAGCACTATGTTTGGGCTCTTTTACTGTGGTTATCTTCCTTGTTTTTGGGTTAAGCTTCGATGTGGTCTAGCAGCACCAGCCTTGAACACTAGAATTGGAGCAGCATGGCCCATCCTTCTTGGTGGACAAGCTCATTGGACTGTTGGTCTTGTGGCAACCTTGGTTTCTTTCAGTAGCATTATTGCAGCCGACACTTGTGCCTTTTTGGGTGGCAAGGCATTTGGTAGGACGCCCCTAACTAGTGTTAGTCCAAAGAAGACGTGGGAAGGAACTATTGTAGGCTTGGGTGGTTGTATAGCCACTTCTGTTGTGTTATCAAGGATTTTTTGCTGGCCAAAATCTTTGCTAAGTGCTATAGCTTTTGGATTTCTCAATTTTTTCGCGTCTGTCTTTGGTGATCTTACTGAATCAATGATCAAACGTGATGCGGGTGTTAAGGACTCTGGGTCTCTAATACCAGGACATGGTGGAATACTAGATAGAGTGGACAGTTACATGTTCACAGGTGCACTTGCATACTCCTTTGTCAAAACCTTCTTGCCAATGTATGGAGTTTGA

Protein Analysis

410

Amino Acids

43.9

Weight (kDa)

9.65

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 14, 169
AccB7I CCANNNNNTGG 2 cut(s) 1136, 1220
AccII CGCG 3 cut(s) 202, 579, 1055
AciI CCGC 7 cut(s) 82, 205, 233, 425, 434, 579, 1100
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 123, 1004
AcsI RAATTY 2 cut(s) 192, 354
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 3 cut(s) 11, 166, 902
AfaI GTAC 3 cut(s) 118, 213, 464
AfiI CCNNNNNNNGG 2 cut(s) 1136, 1220
AflIII ACRYGT 1 cut(s) 1167
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 3 cut(s) 301, 470, 757
AhdI GACNNNNNGTC 2 cut(s) 816, 1117
AhlI ACTAGT 1 cut(s) 911
AjiI CACGTC 1 cut(s) 933
AjnI CCWGG 2 cut(s) 267, 1129
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 5 cut(s) 440, 667, 727, 803, 1031
AluI AGCT 5 cut(s) 440, 667, 727, 803, 1031
Alw21I GWGCWC 4 cut(s) 38, 457, 553, 1183
Alw26I GTCTC 2 cut(s) 319, 1125
Alw44I GTGCAC 3 cut(s) 34, 453, 1179
AlwI GGATC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 5 cut(s) 123, 181, 283, 779, 1004
ApaLI GTGCAC 3 cut(s) 34, 453, 1179
ApeKI GCWGC 6 cut(s) 422, 437, 672, 743, 773, 857
ApoI RAATTY 2 cut(s) 192, 354
AscI GGCGCGCC 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 30
AspLEI GCGC 2 cut(s) 202, 204
AspS9I GGNCC 2 cut(s) 181, 780
AsuHPI GGTGA 1 cut(s) 1079
AvaI CYCGRG 1 cut(s) 228
BaeGI GKGCMC 3 cut(s) 38, 457, 1183
BalI TGGCCA 1 cut(s) 1006
BanII GRGCYC 1 cut(s) 690
BarI GAAGNNNNNNTAC 2 cut(s) 958, 990
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 4 cut(s) 38, 457, 553, 1183
BbvI GCAGC 6 cut(s) 434, 449, 684, 755, 785, 869
BccI CCATC 3 cut(s) 149, 405, 791
BceAI ACGGC 3 cut(s) 192, 234, 270
BcgI CGANNNNNNTGC 5 cut(s) 28, 242, 276, 851, 885
BciT130I CCWGG 2 cut(s) 269, 1131
BclI TGATCA 1 cut(s) 1086
BcoDI GTCTC 2 cut(s) 319, 1125
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 6 cut(s) 104, 563, 740, 762, 912, 1148
BfmI CTRYAG 1 cut(s) 1026
BlpI GCTNAGC 1 cut(s) 668
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 269, 1131
BmeRI GACNNNNNGTC 2 cut(s) 816, 1117
BmeT110I CYCGRG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 933
BmgT120I GGNCC 2 cut(s) 181, 780
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 269, 1131
BmsI GCATC 2 cut(s) 331, 1087
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 523
BsaHI GRCGYC 3 cut(s) 11, 166, 902
BsaI GGTCTC 1 cut(s) 1125
BsaJI CCNNGG 2 cut(s) 247, 831
BsaWI WCCGGW 1 cut(s) 30
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 399, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 1136, 1220
Bse118I RCCGGY 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 523
BseBI CCWGG 2 cut(s) 269, 1131
BseDI CCNNGG 2 cut(s) 247, 831
BseGI GGATG 3 cut(s) 313, 416, 783
BseJI GATNNNNATC 1 cut(s) 523
BseLI CCNNNNNNNGG 2 cut(s) 1136, 1220
BseMII CTCAG 1 cut(s) 330
BsePI GCGCGC 1 cut(s) 200
BseSI GKGCMC 3 cut(s) 38, 457, 1183
BseXI GCAGC 6 cut(s) 434, 449, 684, 755, 785, 869
Bsh1236I CGCG 3 cut(s) 202, 579, 1055
BshFI GGCC 5 cut(s) 125, 183, 285, 781, 1006
BshTI ACCGGT 1 cut(s) 30
BsiHKAI GWGCWC 4 cut(s) 38, 457, 553, 1183
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 3 cut(s) 31, 184, 239
BsiWI CGTACG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 1136, 1220
BsmAI GTCTC 2 cut(s) 319, 1125
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 5 cut(s) 125, 183, 285, 781, 1006
Bso31I GGTCTC 1 cut(s) 1125
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 5 cut(s) 38, 457, 553, 690, 1183
Bsp143I GATC 3 cut(s) 142, 1069, 1086
Bsp1720I GCTNAGC 1 cut(s) 668
BspACI CCGC 7 cut(s) 82, 205, 233, 425, 434, 579, 1100
BspANI GGCC 5 cut(s) 125, 183, 285, 781, 1006
BspCNI CTCAG 1 cut(s) 329
BspFNI CGCG 3 cut(s) 202, 579, 1055
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 1125
BsrFI RCCGGY 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 247, 831
BssHII GCGCGC 1 cut(s) 200
BssMI GATC 3 cut(s) 142, 1069, 1086
BssNI GRCGYC 3 cut(s) 11, 166, 902
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 2 cut(s) 247, 831
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 2 cut(s) 269, 1131
Bst4CI ACNGT 3 cut(s) 698, 814, 1163
BstACI GRCGYC 3 cut(s) 11, 166, 902
BstC8I GCNNGC 2 cut(s) 202, 1004
BstDEI CTNAG 3 cut(s) 316, 668, 1019
BstF5I GGATG 3 cut(s) 313, 416, 783
BstFNI CGCG 3 cut(s) 202, 579, 1055
BstHHI GCGC 2 cut(s) 202, 204
BstKTI GATC 3 cut(s) 145, 1072, 1089
BstMAI GTCTC 2 cut(s) 319, 1125
BstMBI GATC 3 cut(s) 142, 1069, 1086
BstMWI GCNNNNNNNGC 3 cut(s) 431, 434, 749
BstNI CCWGG 2 cut(s) 269, 1131
BstNSI RCATGY 1 cut(s) 1171
BstSCI CCNGG 2 cut(s) 267, 1129
BstSFI CTRYAG 1 cut(s) 1026
BstSLI GKGCMC 3 cut(s) 38, 457, 1183
BstUI CGCG 3 cut(s) 202, 579, 1055
BstV1I GCAGC 6 cut(s) 434, 449, 684, 755, 785, 869
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 5 cut(s) 125, 183, 285, 781, 1006
BtgZI GCGATG 1 cut(s) 267
BtrI CACGTC 1 cut(s) 933
BtsCI GGATG 3 cut(s) 313, 416, 783
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 202, 1004
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 2 cut(s) 202, 204
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 181, 780
CseI GACGC 2 cut(s) 910, 1044
Csp6I GTAC 3 cut(s) 117, 212, 463
CspAI ACCGGT 1 cut(s) 30
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 5 cut(s) 485, 556, 777, 1136, 1168
CviQI GTAC 3 cut(s) 117, 212, 463
DdeI CTNAG 3 cut(s) 316, 668, 1019
DpnI GATC 3 cut(s) 144, 1071, 1088
DpnII GATC 3 cut(s) 142, 1069, 1086
DriI GACNNNNNGTC 2 cut(s) 816, 1117
EaeI YGGCCR 2 cut(s) 123, 1004
Eam1105I GACNNNNNGTC 2 cut(s) 816, 1117
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 247, 831
Eco24I GRGCYC 1 cut(s) 690
Eco31I GGTCTC 1 cut(s) 1125
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 267, 1129
EcoT14I CCWWGG 2 cut(s) 247, 831
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 2 cut(s) 247, 831
FaeI CATG 5 cut(s) 488, 559, 780, 1139, 1171
FaqI GGGAC 1 cut(s) 60
FatI CATG 5 cut(s) 484, 555, 776, 1135, 1167
FauI CCCGC 1 cut(s) 1093
FbaI TGATCA 1 cut(s) 1086
FokI GGATG 3 cut(s) 320, 423, 770
FriOI GRGCYC 1 cut(s) 690
FspBI CTAG 6 cut(s) 104, 563, 740, 762, 912, 1148
GlaI GCGC 2 cut(s) 201, 203
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 5 cut(s) 125, 183, 285, 781, 1006
HapII CCGG 3 cut(s) 31, 184, 239
HgaI GACGC 2 cut(s) 910, 1044
HhaI GCGC 2 cut(s) 202, 204
Hin1I GRCGYC 3 cut(s) 11, 166, 902
Hin1II CATG 5 cut(s) 488, 559, 780, 1139, 1171
Hin6I GCGC 2 cut(s) 200, 202
HinP1I GCGC 2 cut(s) 200, 202
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 4 cut(s) 481, 489, 1079, 1112
HpaII CCGG 3 cut(s) 31, 184, 239
HphI GGTGA 1 cut(s) 1079
Hpy166II GTNNAC 8 cut(s) 36, 212, 277, 455, 797, 1159, 1173, 1181
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 96, 528
Hpy8I GTNNAC 8 cut(s) 36, 212, 277, 455, 797, 1159, 1173, 1181
Hpy99I CGWCG 3 cut(s) 13, 16, 124
HpyAV CCTTC 5 cut(s) 69, 491, 797, 932, 1216
HpyCH4III ACNGT 3 cut(s) 698, 814, 1163
HpyCH4IV ACGT 5 cut(s) 11, 119, 166, 932, 1093
HpyCH4V TGCA 7 cut(s) 36, 422, 455, 662, 857, 1181, 1187
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 434, 749
HpyF3I CTNAG 3 cut(s) 316, 668, 1019
HpySE526I ACGT 5 cut(s) 11, 119, 166, 932, 1093
Hsp92I GRCGYC 3 cut(s) 11, 166, 902
Hsp92II CATG 5 cut(s) 488, 559, 780, 1139, 1171
HspAI GCGC 2 cut(s) 200, 202
Ksp22I TGATCA 1 cut(s) 1086
Kzo9I GATC 3 cut(s) 142, 1069, 1086
LmnI GCTCC 2 cut(s) 235, 770
Lsp1109I GCAGC 6 cut(s) 434, 449, 684, 755, 785, 869
LweI GCATC 2 cut(s) 331, 1087
MaeI CTAG 6 cut(s) 104, 563, 740, 762, 912, 1148
MaeII ACGT 5 cut(s) 11, 119, 166, 932, 1093
MaeIII GTNAC 3 cut(s) 565, 598, 1163
MalI GATC 3 cut(s) 144, 1071, 1088
MboI GATC 3 cut(s) 142, 1069, 1086
MboII GAAGA 2 cut(s) 698, 940
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 5 cut(s) 38, 457, 553, 690, 1183
MlsI TGGCCA 1 cut(s) 1006
MluCI AATT 9 cut(s) 128, 136, 192, 290, 354, 470, 543, 765, 1045
MluNI TGGCCA 1 cut(s) 1006
MlyI GAGTC 2 cut(s) 490, 1106
Mox20I TGGCCA 1 cut(s) 1006
MscI TGGCCA 1 cut(s) 1006
MseI TTAA 3 cut(s) 344, 723, 1107
Msp20I TGGCCA 1 cut(s) 1006
MspA1I CMGCKG 2 cut(s) 425, 440
MspI CCGG 3 cut(s) 31, 184, 239
MspR9I CCNGG 2 cut(s) 269, 1131
MvaI CCWGG 2 cut(s) 269, 1131
MvnI CGCG 3 cut(s) 202, 579, 1055
MwoI GCNNNNNNNGC 3 cut(s) 431, 434, 749
NdeII GATC 3 cut(s) 142, 1069, 1086
NlaIII CATG 5 cut(s) 488, 559, 780, 1139, 1171
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 1 cut(s) 1171
PalAI GGCGCGCC 1 cut(s) 200
PauI GCGCGC 1 cut(s) 200
PciI ACATGT 1 cut(s) 1167
PfeI GAWTC 2 cut(s) 489, 1079
Pfl23II CGTACG 1 cut(s) 116
PflMI CCANNNNNTGG 2 cut(s) 1136, 1220
PinAI ACCGGT 1 cut(s) 30
PleI GAGTC 2 cut(s) 489, 1106
PpsI GAGTC 2 cut(s) 489, 1106
PscI ACATGT 1 cut(s) 1167
Psp6I CCWGG 2 cut(s) 267, 1129
PspGI CCWGG 2 cut(s) 267, 1129
PspLI CGTACG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 181, 780
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 1 cut(s) 142
PteI GCGCGC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 3 cut(s) 118, 213, 464
RsaNI GTAC 3 cut(s) 117, 212, 463
SaqAI TTAA 3 cut(s) 344, 723, 1107
Sau3AI GATC 3 cut(s) 142, 1069, 1086
Sau96I GGNCC 2 cut(s) 181, 780
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 2 cut(s) 490, 1106
ScrFI CCNGG 2 cut(s) 269, 1131
SduI GDGCHC 5 cut(s) 38, 457, 553, 690, 1183
SfaNI GCATC 2 cut(s) 331, 1087
SfcI CTRYAG 1 cut(s) 1026
SgrAI CRCCGGYG 1 cut(s) 30
SgsI GGCGCGCC 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SpeI ACTAGT 1 cut(s) 911
Sse9I AATT 9 cut(s) 128, 136, 192, 290, 354, 470, 543, 765, 1045
SsiI CCGC 7 cut(s) 82, 205, 233, 425, 434, 579, 1100
SspMI CTAG 6 cut(s) 104, 563, 740, 762, 912, 1148
StyD4I CCNGG 2 cut(s) 267, 1129
StyI CCWWGG 2 cut(s) 247, 831
TaaI ACNGT 3 cut(s) 698, 814, 1163
TaiI ACGT 5 cut(s) 14, 122, 169, 935, 1096
TaqI TCGA 3 cut(s) 153, 517, 730
TasI AATT 9 cut(s) 128, 136, 192, 290, 354, 470, 543, 765, 1045
TatI WGTACW 2 cut(s) 211, 462
TauI GCSGC 4 cut(s) 84, 207, 428, 437
TfiI GAWTC 2 cut(s) 489, 1079
Tru1I TTAA 3 cut(s) 344, 723, 1107
Tru9I TTAA 3 cut(s) 344, 723, 1107
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 6 cut(s) 422, 437, 672, 743, 773, 857
Tsp45I GTSAC 1 cut(s) 598
TspRI CASTG 1 cut(s) 499
Van91I CCANNNNNTGG 2 cut(s) 1136, 1220
VneI GTGCAC 3 cut(s) 34, 453, 1179
XapI RAATTY 2 cut(s) 192, 354
XceI RCATGY 1 cut(s) 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 930
XspI CTAG 6 cut(s) 104, 563, 740, 762, 912, 1148
ZraI GACGTC 2 cut(s) 12, 167
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.