Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006601

Physical Location & Seq

Genomic Coordinates Forward (+)

28017941 .. 28018207

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0200600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGATTGGTTCCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAAAAGACGTTGCGCGAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAACTCGGCGCTCTGGGGGAGGCTGTGGGAAGATTGGTGGAGAAAGGATATTCTCCGAATTCTTTTACATATAATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0055035 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

88

Amino Acids

10.44

Weight (kDa)

4.93

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 41	2.7e-12	PPR repeat family
PPR_1	PF12854	24 - 56	6.9e-08	PPR repeat
PPR_2	PF13041	28 - 64	5.3e-09	PPR repeat family
PPR	PF01535	30 - 59	3.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45150 AT2G45150 AT2G45150 AT3G60620 AT3G60620
fragaria_vesca	FvH4_7g11110 FvH4_7g11110
malus_domestica	MD02G1210300.v1.1 MD07G1115700.v1.1
prunus_persica	Prupe.2G138300_v2.0.a1 Prupe.2G138300_v2.0.a1
pyrus_communis	pycom02g17210 pycom07g10870
rosa_chinensis	RchiOBHm_Chr1g0349131
rosa_laevigata	RLG00000028603
rosa_multiflora	Rmu_sc0008324.1_g000008 Rmu_sc0012100.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306080
rosa_rugosa	Rorug01G0200400 Rorug01G0200500 Rorug01G0200600
rosa_samantha	Rh1AG218300 Rh1BG183700 Rh1CG202800 Rh1DG213500
rosa_wichuraiana	Rw1G018540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	138
AciI	CCGC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	110
AluBI	AGCT	2 cut(s)	28, 113
AluI	AGCT	2 cut(s)	28, 113
ApoI	RAATTY	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	138, 196
BccI	CCATC	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
BseGI	GGATG	2 cut(s)	10, 58
Bsh1236I	CGCG	1 cut(s)	138
BspACI	CCGC	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	10, 58
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	138, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstUI	CGCG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	10, 58
CfoI	GCGC	2 cut(s)	138, 196
CviJI	RGCY	4 cut(s)	28, 38, 113, 208
CviKI_1	RGCY	4 cut(s)	28, 38, 113, 208
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	243
FaiI	YATR	9 cut(s)	12, 50, 96, 104, 164, 180, 182, 255, 257
FokI	GGATG	2 cut(s)	17, 65
GlaI	GCGC	2 cut(s)	137, 195
HaeII	RGCGCY	1 cut(s)	197
HhaI	GCGC	2 cut(s)	138, 196
Hin6I	GCGC	2 cut(s)	136, 194
HinP1I	GCGC	2 cut(s)	136, 194
HindIII	AAGCTT	1 cut(s)	111
Hpy188I	TCNGA	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	131
HspAI	GCGC	2 cut(s)	136, 194
LpnPI	CCDG	3 cut(s)	5, 14, 184
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	184, 227
MluCI	AATT	2 cut(s)	148, 243
MnlI	CCTC	5 cut(s)	28, 55, 79, 168, 198
MseI	TTAA	2 cut(s)	42, 147
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	42, 147
SetI	ASST	6 cut(s)	30, 48, 90, 115, 134, 179
SgeI	CNNG	6 cut(s)	32, 41, 149, 167, 202, 211
Sse9I	AATT	2 cut(s)	148, 243
SsiI	CCGC	1 cut(s)	143
TaiI	ACGT	1 cut(s)	134
TasI	AATT	2 cut(s)	148, 243
Tru1I	TTAA	2 cut(s)	42, 147
Tru9I	TTAA	2 cut(s)	42, 147
XapI	RAATTY	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.