AT3G61610

Glucose-6-phosphate 1-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002732
Physical Location & Seq
Forward (+)
22798984 .. 22801231
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61610.2

Sequence Viewer

Length: 954 bp
ATGGGTCAATATGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGATTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAGATAAGTTTACATGGAGGACAAGTGATTTCATGGAGGAATGAACTAGGCGAAGAGCTTCTTTTCACTAGCAATAAGGCTATATTCAAACCCCCAAAATCAATGCGTGGAGGGATTCAGATTTGTTATCCGCAGTTTGGGGATTGTGGATCACTGGATCAACATGGGTTTGCAAGGAACAAAATTTGGGTAATCGATGAGAACCCACCTCCACTTAACTCAAACGAATCCTTAGGAAAATCCTTTGTTGATCTTCTTTTGAAACCATCAGAAGATGACTTAAAGCAATGGCCTCATAGTTTCGAGTTCCGTCTTAGGGTTTCGCTTGCTGTAGATGGCGACTTAACATTGACTTCTCGGATTAGAAACATCAATGGCAAGCCTTTTAGCTTCTCATTTGCATATCACACCTACCTCTCTGTCTCTGACATAAGTGAAGTGAGAATTGAAGGGTTGGAGACATTGGACTACTTAGACAACCTCAGCCAAAGACAGCTTTTGACTGAACAAGGCGATGCAATAACCTTTGAATCCGAGATGGACCGGACATACCTTAGATCACCAAAGGTGGTTGCAGTTCTTGATCATGAACGGAAAAGAACATATGTTATCGGAAAGGAAGGACTTCCAGACACCGTGGTGTGGAATCCATGGGAGAAGAAATCGAAAACAATGGCGGATTTTGGTGATGAAGAGTACAAAAGCATGCTTTGTGTGGATGGTGCAGCAGTGGAGAGACCGATCACTTTGAAGCCAGGAGAAGAATGGACCGGCCGGCTAATATTGACCGCTGTTAAATCCAGTTTCTGCTTCGATCAACTCGAACTACAGAGCAAGGGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

317

Amino Acids

35.94

Weight (kDa)

5.31

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 18 - 292 1.9e-67 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 239, 785, 897
AclWI GGATC 3 cut(s) 33, 265, 273
AcoI YGGCCR 1 cut(s) 880
AcsI RAATTY 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 98
AfaI GTAC 1 cut(s) 806
AfiI CCNNNNNNNGG 3 cut(s) 245, 424, 750
AgsI TTSAA 5 cut(s) 196, 370, 557, 638, 859
AjnI CCWGG 1 cut(s) 862
AleI CACNNNNGTG 1 cut(s) 746
AluBI AGCT 3 cut(s) 166, 498, 604
AluI AGCT 3 cut(s) 166, 498, 604
Alw26I GTCTC 3 cut(s) 535, 560, 838
AlwI GGATC 3 cut(s) 33, 265, 273
AlwNI CAGNNNCTG 1 cut(s) 915
AoxI GGCC 2 cut(s) 398, 880
ApeKI GCWGC 1 cut(s) 833
ApoI RAATTY 1 cut(s) 291
Asp700I GAANNNNTTC 2 cut(s) 165, 732
AspS9I GGNCC 2 cut(s) 649, 876
AsuHPI GGTGA 2 cut(s) 660, 806
AvaII GGWCC 2 cut(s) 649, 876
AxyI CCTNAGG 1 cut(s) 340
BbvCI CCTCAGC 1 cut(s) 590
BbvI GCAGC 1 cut(s) 845
BccI CCATC 4 cut(s) 382, 437, 640, 821
BciT130I CCWGG 1 cut(s) 864
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 3 cut(s) 535, 560, 838
BfaI CTAG 2 cut(s) 155, 177
BfmI CTRYAG 2 cut(s) 438, 935
BisI GCNGC 1 cut(s) 834
BlsI GCNGC 1 cut(s) 835
Bme1390I CCNGG 1 cut(s) 864
Bme18I GGWCC 2 cut(s) 649, 876
BmgT120I GGNCC 2 cut(s) 649, 876
BmrFI CCNGG 1 cut(s) 864
BmsI GCATC 1 cut(s) 613
Bpu10I CCTNAGC 1 cut(s) 590
Bsa29I ATCGAT 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 838
BsaJI CCNNGG 2 cut(s) 744, 758
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 424, 750
Bse118I RCCGGY 2 cut(s) 878, 882
Bse1I ACTGG 2 cut(s) 267, 909
Bse21I CCTNAGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 864
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 744, 758
BseGI GGATG 1 cut(s) 832
BseLI CCNNNNNNNGG 3 cut(s) 245, 424, 750
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 97, 604
BseNI ACTGG 2 cut(s) 267, 909
BseX3I CGGCCG 1 cut(s) 880
BseXI GCAGC 1 cut(s) 845
BsgI GTGCAG 1 cut(s) 852
Bsh1285I CGRYCG 1 cut(s) 883
BshFI GGCC 2 cut(s) 400, 882
BshVI ATCGAT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 883
BsiSI CCGG 3 cut(s) 652, 879, 883
BslI CCNNNNNNNGG 3 cut(s) 245, 424, 750
BsmAI GTCTC 3 cut(s) 535, 560, 838
BsnI GGCC 2 cut(s) 400, 882
Bso31I GGTCTC 1 cut(s) 838
Bsp143I GATC 8 cut(s) 25, 257, 265, 358, 665, 691, 849, 922
Bsp19I CCATGG 1 cut(s) 758
BspACI CCGC 3 cut(s) 239, 785, 897
BspANI GGCC 2 cut(s) 400, 882
BspCNI CTCAG 2 cut(s) 96, 603
BspDI ATCGAT 1 cut(s) 303
BspHI TCATGA 1 cut(s) 694
BspPI GGATC 3 cut(s) 33, 265, 273
BspQI GCTCTTC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 838
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 2 cut(s) 878, 882
BsrI ACTGG 2 cut(s) 267, 909
BssAI RCCGGY 2 cut(s) 878, 882
BssECI CCNNGG 2 cut(s) 744, 758
BssMI GATC 8 cut(s) 25, 257, 265, 358, 665, 691, 849, 922
BssT1I CCWWGG 1 cut(s) 758
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 2 cut(s) 19, 745
Bst6I CTCTTC 2 cut(s) 156, 795
BstC8I GCNNGC 4 cut(s) 435, 488, 815, 884
BstDEI CTNAG 6 cut(s) 83, 340, 422, 580, 590, 662
BstDSI CCRYGG 2 cut(s) 744, 758
BstF5I GGATG 1 cut(s) 832
BstKTI GATC 8 cut(s) 28, 260, 268, 361, 668, 694, 852, 925
BstMAI GTCTC 3 cut(s) 535, 560, 838
BstMBI GATC 8 cut(s) 25, 257, 265, 358, 665, 691, 849, 922
BstMCI CGRYCG 1 cut(s) 883
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 1 cut(s) 862
BstSFI CTRYAG 2 cut(s) 438, 935
BstV1I GCAGC 1 cut(s) 845
BstZI CGGCCG 1 cut(s) 880
Bsu15I ATCGAT 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 340
BsuRI GGCC 2 cut(s) 400, 882
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 744, 758
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 1 cut(s) 832
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 3 cut(s) 24, 260, 843
Cac8I GCNNGC 4 cut(s) 435, 488, 815, 884
CaiI CAGNNNCTG 1 cut(s) 915
CciI TCATGA 1 cut(s) 694
Cfr10I RCCGGY 2 cut(s) 878, 882
Cfr13I GGNCC 2 cut(s) 649, 876
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 805
CviAII CATG 7 cut(s) 95, 122, 141, 272, 695, 759, 814
CviQI GTAC 1 cut(s) 805
DdeI CTNAG 6 cut(s) 83, 340, 422, 580, 590, 662
DpnI GATC 8 cut(s) 27, 259, 267, 360, 667, 693, 851, 924
DpnII GATC 8 cut(s) 25, 257, 265, 358, 665, 691, 849, 922
DraIII CACNNNGTG 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 880
EagI CGGCCG 1 cut(s) 880
Eam1104I CTCTTC 2 cut(s) 156, 795
EarI CTCTTC 2 cut(s) 156, 795
EciI GGCGGA 1 cut(s) 800
EclXI CGGCCG 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 758
Eco31I GGTCTC 1 cut(s) 838
Eco47I GGWCC 2 cut(s) 649, 876
Eco52I CGGCCG 1 cut(s) 880
Eco81I CCTNAGG 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 862
EcoT14I CCWWGG 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 758
FaeI CATG 7 cut(s) 98, 125, 144, 275, 698, 762, 817
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 7 cut(s) 94, 121, 140, 271, 694, 758, 813
FauNDI CATATG 1 cut(s) 712
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 1 cut(s) 834
FokI GGATG 1 cut(s) 839
Fsp4HI GCNGC 1 cut(s) 834
FspBI CTAG 2 cut(s) 155, 177
GluI GCNGC 1 cut(s) 834
HaeIII GGCC 2 cut(s) 400, 882
HapII CCGG 3 cut(s) 652, 879, 883
Hin1II CATG 7 cut(s) 98, 125, 144, 275, 698, 762, 817
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 5 cut(s) 223, 335, 638, 754, 948
HpaII CCGG 3 cut(s) 652, 879, 883
HphI GGTGA 2 cut(s) 660, 806
Hpy166II GTNNAC 2 cut(s) 70, 119
Hpy188I TCNGA 8 cut(s) 86, 228, 379, 468, 535, 643, 722, 953
Hpy188III TCNNGA 3 cut(s) 689, 695, 737
Hpy8I GTNNAC 2 cut(s) 70, 119
HpyAV CCTTC 3 cut(s) 89, 551, 722
HpyCH4III ACNGT 2 cut(s) 19, 745
HpyCH4V TGCA 6 cut(s) 14, 281, 509, 626, 683, 833
HpyF3I CTNAG 6 cut(s) 83, 340, 422, 580, 590, 662
Hsp92II CATG 7 cut(s) 98, 125, 144, 275, 698, 762, 817
KroI GCCGGC 1 cut(s) 882
KroNI GCCGGC 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 8 cut(s) 25, 257, 265, 358, 665, 691, 849, 922
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 8 cut(s) 248, 665, 750, 849, 876, 892, 896, 922
Lsp1109I GCAGC 1 cut(s) 845
LweI GCATC 1 cut(s) 613
MaeI CTAG 2 cut(s) 155, 177
MalI GATC 8 cut(s) 27, 259, 267, 360, 667, 693, 851, 924
MboI GATC 8 cut(s) 25, 257, 265, 358, 665, 691, 849, 922
MboII GAAGA 6 cut(s) 173, 353, 392, 778, 812, 881
MluCI AATT 2 cut(s) 291, 552
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 7 cut(s) 119, 138, 212, 327, 411, 533, 599
MroNI GCCGGC 1 cut(s) 882
MroXI GAANNNNTTC 2 cut(s) 165, 732
MseI TTAA 4 cut(s) 324, 389, 452, 903
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 899
MspI CCGG 3 cut(s) 652, 879, 883
MspR9I CCNGG 1 cut(s) 864
MvaI CCWGG 1 cut(s) 864
NaeI GCCGGC 1 cut(s) 884
NcoI CCATGG 1 cut(s) 758
NdeI CATATG 1 cut(s) 712
NdeII GATC 8 cut(s) 25, 257, 265, 358, 665, 691, 849, 922
NgoMIV GCCGGC 1 cut(s) 882
NlaIII CATG 7 cut(s) 98, 125, 144, 275, 698, 762, 817
NspI RCATGY 1 cut(s) 817
OliI CACNNNNGTG 1 cut(s) 746
PaeI GCATGC 1 cut(s) 817
PagI TCATGA 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PdiI GCCGGC 1 cut(s) 884
PdmI GAANNNNTTC 2 cut(s) 165, 732
PfeI GAWTC 5 cut(s) 223, 335, 638, 754, 948
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 835
Psp6I CCWGG 1 cut(s) 862
PspGI CCWGG 1 cut(s) 862
PspPI GGNCC 2 cut(s) 649, 876
PstNI CAGNNNCTG 1 cut(s) 915
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 806
RsaNI GTAC 1 cut(s) 805
RseI CAYNNNNRTG 1 cut(s) 746
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 4 cut(s) 324, 389, 452, 903
SatI GCNGC 1 cut(s) 834
Sau3AI GATC 8 cut(s) 25, 257, 265, 358, 665, 691, 849, 922
Sau96I GGNCC 2 cut(s) 649, 876
ScrFI CCNGG 1 cut(s) 864
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 2 cut(s) 438, 935
SinI GGWCC 2 cut(s) 649, 876
SmiMI CAYNNNNRTG 1 cut(s) 746
SphI GCATGC 1 cut(s) 817
Sse9I AATT 2 cut(s) 291, 552
SsiI CCGC 3 cut(s) 239, 785, 897
SspI AATATT 1 cut(s) 891
SspMI CTAG 2 cut(s) 155, 177
StyD4I CCNGG 1 cut(s) 862
StyI CCWWGG 1 cut(s) 758
TaaI ACNGT 2 cut(s) 19, 745
TaqI TCGA 5 cut(s) 303, 411, 773, 921, 930
TaqII GACCGA 1 cut(s) 862
TasI AATT 2 cut(s) 291, 552
TatI WGTACW 1 cut(s) 804
TfiI GAWTC 5 cut(s) 223, 335, 638, 754, 948
Tru1I TTAA 4 cut(s) 324, 389, 452, 903
Tru9I TTAA 4 cut(s) 324, 389, 452, 903
TscAI CASTG 3 cut(s) 24, 267, 843
TseI GCWGC 1 cut(s) 833
TspDTI ATGAA 4 cut(s) 129, 165, 711, 813
TspGWI ACGGA 2 cut(s) 407, 715
TspRI CASTG 3 cut(s) 24, 267, 843
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 649, 876
XapI RAATTY 1 cut(s) 291
XceI RCATGY 1 cut(s) 817
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XmnI GAANNNNTTC 2 cut(s) 165, 732
XspI CTAG 2 cut(s) 155, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.