Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002732

Physical Location & Seq

Genomic Coordinates Forward (+)

37316642 .. 37320089

Gene Structure 3448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0263500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCAATGATGCAGAATCGATTCGGGGGGAGTGGATAGCTACTGTATCATCAGACATGTCCGACCAGGCCAATGATGCTGTATCGATTCAGCTAAGCAGAAAGAAAGATGGAAAAACTCTTGAAGCACGACATAAGGCAACGCGCTGGTGGGCAACAGTCTTCTTTATGATCTGTGGATTTGCGGTCTTCATTGATCCTTTGTTCTGTTATATCTATGTCATAGACAGGGACAACATGCGCATCTCCTCCGATCCGAAAGCGATGTGGGCATATTTTGGTCTGCGAACAACCATTGATGTCTTTTATTTTATCGATATTATCGTTTTCTTATGTGGAGGTGAGGGTAAGAAATTTGGGGCATGCTGCTGGAAGCAGGAAAATGATCAAAAGTCGACAGTAATCGAAAAATGTTACTTGTTGCGTCGCATTTTGGTCGCCCTTCCCATTCCAGAGGTACTCGTGGTCTGTGCACCATTTATAAACAACTCTGATCCATTTTATGCTATCTTCGTTATTGTCCCTTTCCAATATACGCTCCGGATATTTCTCATCTATGGAGGGGAAAGATGGTCTCTTATCAACGAGACTACACAAGCCATGCTTAAACCGTTGTTGGTTTTGCTTCCATTCATCCTTGCTTCTCATCTATTTGGAGCGTTGTGGTACCGTCTTGCTGTGCAAAGACAAATAGATTGTTGGAAGCCACATTGTGAAGTTATTCGAGGAAATAATTGTACAAGAATTAAAGACTTCCAGATTCCAAAAGCGATCAACATCACGCATTTGCAAGCATTGTGCCCTACAAACAGTGAAGATAAAAAAGTTTTTGACTTTGGTATATATCTCTATGCTCTTCAACCTAATTCCACATGTTCATCCAATCTTCTACAAAGGATCTCGCAATCTTTTTGGTGGGCTCTACGGAATCTCAGTTCTTTTGGTGAAAATCTCCAGACCAGCATGCATACGTTGGAAATCTACTTTTCAATTGTGATATCTATAAGTGGCATAGCGCTATTTGTAGTATGTATTAGTGCAACAATAAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

351

Amino Acids

40.14

Weight (kDa)

8.36

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61610 AT3G61610
fragaria_vesca	FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830
malus_domestica	MD01G1074800.v1.1 MD07G1143900.v1.1
prunus_persica	Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1
pyrus_communis	pycom01g10390
rosa_chinensis	RchiOBHm_Chr1g0358641
rosa_laevigata	RLG00000027939
rosa_multiflora	Rmu_sc0001609.1_g000023
rosa_roxburghii	Rroxscaffold_4G00297740
rosa_rugosa	Rorug01G0263100 Rorug01G0263200 Rorug01G0263300 Rorug01G0263400 Rorug01G0263500 Rorug01G0263500 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263700
rosa_samantha	Rh1AG278300 Rh1CG261700 Rh1DG273100
rosa_wichuraiana	Rw1G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
Acc16I	TGCGCA	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	666
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	1 cut(s)	145
AccIII	TCCGGA	1 cut(s)	540
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	4 cut(s)	191, 248, 488, 905
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	353
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	3 cut(s)	459, 668, 739
AfeI	AGCGCT	1 cut(s)	1017
AflIII	ACRYGT	2 cut(s)	57, 872
AgsI	TTSAA	3 cut(s)	125, 860, 990
AjnI	CCWGG	1 cut(s)	66
AloI	GAACNNNNNNTCC	2 cut(s)	919, 951
AluBI	AGCT	2 cut(s)	41, 94
AluI	AGCT	2 cut(s)	41, 94
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	2 cut(s)	579, 581
Alw44I	GTGCAC	1 cut(s)	471
AlwI	GGATC	4 cut(s)	191, 248, 488, 905
Aor13HI	TCCGGA	1 cut(s)	540
Aor51HI	AGCGCT	1 cut(s)	1017
AoxI	GGCC	2 cut(s)	3, 69
ApaLI	GTGCAC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	353
Asp700I	GAANNNNTTC	2 cut(s)	21, 720
Asp718I	GGTACC	1 cut(s)	666
AspLEI	GCGC	3 cut(s)	147, 243, 1018
AsuHPI	GGTGA	2 cut(s)	353, 956
BaeGI	GKGCMC	2 cut(s)	475, 803
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	922
BauI	CACGAG	1 cut(s)	461
BbsI	GAAGAC	2 cut(s)	154, 181
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	2 cut(s)	104, 564
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	579, 581
BfoI	RGCGCY	1 cut(s)	1019
BisI	GCNGC	1 cut(s)	367
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	668
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	67, 252
BpiI	GAAGAC	2 cut(s)	154, 181
BpmI	CTGGAG	1 cut(s)	938
Bpu1102I	GCTNAGC	1 cut(s)	95
Bsa29I	ATCGAT	3 cut(s)	20, 86, 315
BsaBI	GATNNNNATC	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	579
BsaWI	WCCGGW	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	776
BseAI	TCCGGA	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	3 cut(s)	20, 86, 315
BseGI	GGATG	2 cut(s)	633, 878
BseJI	GATNNNNATC	1 cut(s)	776
BseMII	CTCAG	1 cut(s)	946
BseRI	GAGGAG	1 cut(s)	238
BseSI	GKGCMC	2 cut(s)	475, 803
BseXI	GCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	5, 71
BshNI	GGYRCC	1 cut(s)	666
BshVI	ATCGAT	3 cut(s)	20, 86, 315
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	541
BslFI	GGGAC	2 cut(s)	245, 506
BsmAI	GTCTC	2 cut(s)	579, 581
BsmFI	GGGAC	2 cut(s)	245, 506
BsnI	GGCC	2 cut(s)	5, 71
Bso31I	GGTCTC	1 cut(s)	579
Bsp1286I	GDGCHC	3 cut(s)	475, 803, 922
Bsp13I	TCCGGA	1 cut(s)	540
Bsp1407I	TGTACA	1 cut(s)	737
Bsp143I	GATC	7 cut(s)	171, 196, 253, 385, 493, 771, 897
Bsp1720I	GCTNAGC	1 cut(s)	95
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	5, 71
BspCNI	CTCAG	1 cut(s)	945
BspDI	ATCGAT	3 cut(s)	20, 86, 315
BspEI	TCCGGA	1 cut(s)	540
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	668
BspPI	GGATC	4 cut(s)	191, 248, 488, 905
BspQI	GCTCTTC	1 cut(s)	861
BspT107I	GGYRCC	1 cut(s)	666
BspTNI	GGTCTC	1 cut(s)	579
BsrGI	TGTACA	1 cut(s)	737
BssMI	GATC	7 cut(s)	171, 196, 253, 385, 493, 771, 897
BssSI	CACGAG	1 cut(s)	461
Bst2BI	CACGAG	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	6 cut(s)	46, 160, 400, 612, 671, 812
Bst6I	CTCTTC	1 cut(s)	861
BstAUI	TGTACA	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	364, 792, 965
BstDEI	CTNAG	2 cut(s)	95, 932
BstF5I	GGATG	2 cut(s)	633, 878
BstFNI	CGCG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	1019
BstHHI	GCGC	3 cut(s)	147, 243, 1018
BstKTI	GATC	7 cut(s)	174, 199, 256, 388, 496, 774, 900
BstMAI	GTCTC	2 cut(s)	579, 581
BstMBI	GATC	7 cut(s)	171, 196, 253, 385, 493, 771, 897
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 77, 269
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	5 cut(s)	61, 241, 366, 876, 967
BstSCI	CCNGG	1 cut(s)	66
BstSLI	GKGCMC	2 cut(s)	475, 803
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	2 cut(s)	154, 181
BstX2I	RGATCY	1 cut(s)	897
BstYI	RGATCY	1 cut(s)	897
Bsu15I	ATCGAT	3 cut(s)	20, 86, 315
BsuRI	GGCC	2 cut(s)	5, 71
BsuTUI	ATCGAT	3 cut(s)	20, 86, 315
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	633, 878
BtsIMutI	CAGTG	1 cut(s)	817
Cac8I	GCNNGC	3 cut(s)	364, 792, 965
CfoI	GCGC	3 cut(s)	147, 243, 1018
ClaI	ATCGAT	3 cut(s)	20, 86, 315
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	3 cut(s)	458, 667, 738
CviAII	CATG	6 cut(s)	58, 238, 363, 601, 873, 964
CviJI	RGCY	7 cut(s)	5, 41, 71, 94, 599, 706, 920
CviKI_1	RGCY	7 cut(s)	5, 41, 71, 94, 599, 706, 920
CviQI	GTAC	3 cut(s)	458, 667, 738
DdeI	CTNAG	2 cut(s)	95, 932
DpnI	GATC	7 cut(s)	173, 198, 255, 387, 495, 773, 899
DpnII	GATC	7 cut(s)	171, 196, 253, 385, 493, 771, 897
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	922
Eco31I	GGTCTC	1 cut(s)	579
Eco32I	GATATC	1 cut(s)	999
Eco47III	AGCGCT	1 cut(s)	1017
EcoRII	CCWGG	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	999
EcoT22I	ATGCAT	1 cut(s)	969
EcoT38I	GRGCYC	1 cut(s)	922
FaeI	CATG	6 cut(s)	61, 241, 366, 604, 876, 967
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	2 cut(s)	245, 506
FatI	CATG	6 cut(s)	57, 237, 362, 600, 872, 963
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	367
FokI	GGATG	2 cut(s)	620, 865
FriOI	GRGCYC	1 cut(s)	922
Fsp4HI	GCNGC	1 cut(s)	367
FspAI	RTGCGCAY	1 cut(s)	242
FspI	TGCGCA	1 cut(s)	242
GlaI	GCGC	3 cut(s)	146, 242, 1017
GluI	GCNGC	1 cut(s)	367
GsuI	CTGGAG	1 cut(s)	938
HaeII	RGCGCY	1 cut(s)	1019
HaeIII	GGCC	2 cut(s)	5, 71
HapII	CCGG	1 cut(s)	541
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	3 cut(s)	147, 243, 1018
Hin1II	CATG	6 cut(s)	61, 241, 366, 604, 876, 967
Hin6I	GCGC	3 cut(s)	145, 241, 1016
HinP1I	GCGC	3 cut(s)	145, 241, 1016
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	5 cut(s)	17, 22, 88, 760, 928
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	2 cut(s)	353, 956
Hpy166II	GTNNAC	2 cut(s)	396, 473
Hpy188I	TCNGA	5 cut(s)	55, 64, 253, 258, 493
Hpy188III	TCNNGA	5 cut(s)	122, 452, 541, 757, 955
Hpy8I	GTNNAC	2 cut(s)	396, 473
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	6 cut(s)	46, 160, 400, 612, 671, 812
HpyCH4IV	ACGT	1 cut(s)	971
HpyCH4V	TGCA	6 cut(s)	14, 473, 682, 790, 967, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 77, 269
HpyF3I	CTNAG	2 cut(s)	95, 932
HpySE526I	ACGT	1 cut(s)	971
Hsp92II	CATG	6 cut(s)	61, 241, 366, 604, 876, 967
HspAI	GCGC	3 cut(s)	145, 241, 1016
Kpn2I	TCCGGA	1 cut(s)	540
KpnI	GGTACC	1 cut(s)	670
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	7 cut(s)	171, 196, 253, 385, 493, 771, 897
LguI	GCTCTTC	1 cut(s)	861
LmnI	GCTCC	2 cut(s)	543, 656
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	67, 252
MaeII	ACGT	1 cut(s)	971
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	7 cut(s)	173, 198, 255, 387, 495, 773, 899
MboI	GATC	7 cut(s)	171, 196, 253, 385, 493, 771, 897
MboII	GAAGA	6 cut(s)	154, 181, 502, 827, 848, 878
MfeI	CAATTG	1 cut(s)	990
MflI	RGATCY	1 cut(s)	897
MhlI	GDGCHC	3 cut(s)	475, 803, 922
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	353, 733, 744, 865, 990
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	87, 680, 954
MnlI	CCTC	6 cut(s)	259, 332, 337, 448, 554, 719
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	969
MroI	TCCGGA	1 cut(s)	540
MroXI	GAANNNNTTC	2 cut(s)	21, 720
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	606, 747
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	990
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	11, 77, 269
NdeII	GATC	7 cut(s)	171, 196, 253, 385, 493, 771, 897
NlaIII	CATG	6 cut(s)	61, 241, 366, 604, 876, 967
NlaIV	GGNNCC	1 cut(s)	668
NsbI	TGCGCA	1 cut(s)	242
NsiI	ATGCAT	1 cut(s)	969
NspI	RCATGY	5 cut(s)	61, 241, 366, 876, 967
PaeI	GCATGC	2 cut(s)	366, 967
PciI	ACATGT	2 cut(s)	57, 872
PciSI	GCTCTTC	1 cut(s)	861
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdmI	GAANNNNTTC	2 cut(s)	21, 720
PfeI	GAWTC	5 cut(s)	17, 22, 88, 760, 928
PkrI	GCNGC	1 cut(s)	368
PscI	ACATGT	2 cut(s)	57, 872
PsiI	TTATAA	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	897
RsaI	GTAC	3 cut(s)	459, 668, 739
RsaNI	GTAC	3 cut(s)	458, 667, 738
SalI	GTCGAC	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	2 cut(s)	606, 747
SatI	GCNGC	1 cut(s)	367
Sau3AI	GATC	7 cut(s)	171, 196, 253, 385, 493, 771, 897
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	3 cut(s)	475, 803, 922
SetI	ASST	6 cut(s)	43, 96, 343, 459, 865, 974
SfaNI	GCATC	2 cut(s)	67, 252
SphI	GCATGC	2 cut(s)	366, 967
Sse9I	AATT	5 cut(s)	353, 733, 744, 865, 990
SsiI	CCGC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	6 cut(s)	46, 160, 400, 612, 671, 812
TaiI	ACGT	1 cut(s)	974
TaqI	TCGA	6 cut(s)	20, 86, 315, 395, 405, 724
TasI	AATT	5 cut(s)	353, 733, 744, 865, 990
TatI	WGTACW	1 cut(s)	737
TfiI	GAWTC	5 cut(s)	17, 22, 88, 760, 928
Tru1I	TTAA	2 cut(s)	606, 747
Tru9I	TTAA	2 cut(s)	606, 747
TscAI	CASTG	1 cut(s)	817
TseI	GCWGC	1 cut(s)	366
TspDTI	ATGAA	3 cut(s)	181, 622, 867
TspGWI	ACGGA	1 cut(s)	940
TspRI	CASTG	1 cut(s)	817
VneI	GTGCAC	1 cut(s)	471
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	5 cut(s)	61, 241, 366, 876, 967
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	2 cut(s)	21, 720
Zsp2I	ATGCAT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.