FvH4_7g15830

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002732
Physical Location & Seq
Reverse (-)
13664477 .. 13668989
4513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15830.t3

Sequence Viewer

Length: 954 bp
ATGGGGCATTCATCAGCAGTCTGGGACTGTAAGGCAGCAGTTGAGATCACAAAGGACTTGAATGGGGTTGGACAAGTTGTTCTTCGAAACCCACAAGGGGCTTCAGCACAGGTCAGCTTGCATGGAGGACAGGTCACATCATGGAGGAATGAGCATGGAGAAGAACTCTTATTCACTAGTAGTAAGGCAATATTCAAGCCCCCAAAAGCAATGCGAGGAGGAATTCCCATTTGTTTCCCACAGTTTGGGAATTGTGGATCCTTAGAAATGCATGGTTTTGCAAGAAACAAGGTCTGGGCAATTGATGATAATCCACCCGTGCTTCACCCAAATGATTCCCAGGGAAAATCCTATGTTGATCTACTACTGAAACCATCTGAAGAGGACCTGAAGTGCTGGCCCCATAGTTTTGAGTTTCGCCTAAGGGTGTCTCTTGCAATAAACGGAGATCTGACCCTGATATCACGAGTTAGGAATGTTAATGGCAAGATGTTTAGTTTCTCTTTCGCCTACCACACTTATCTTTTGGTTTCTGATATAAGTGAGGTGAGGATCGAAGGGCTGGAGACATGTGACTACTTAGACAACCTCTATCAAAGAGAACGTTTCACCGAACAAGGAGATGCCATAACTTTTGAATCAGAGGTTGATCGACTTTATTTGAGTTCACGCAAAGTTATTGCAGTTCTTGATCATGAAAAAAAGCAGACATATGTAATCAGAAAGGAGGGACTACCAGATGTTGTCGTTTGGAATCCGTGGGAGAAGAAATCAAAATCCATGGTTGATTTTGGTGACGAGGAGTACAAGCAGATGCTTTGTGTGGATGCTGCAGCAATTGAGAAACTCGTCACGTTGAAGCCAGGAGAGGAATGGACAGGGAGGTTGCAGCTCTCTGTCGTGCCTTCGAGTTTCTGTAGTGAGAACCTGGATCTTGAAAAGGGTGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

318

Amino Acids

35.71

Weight (kDa)

5.58

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 25 - 298 7.2e-68 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AclI AACGTT 1 cut(s) 604
AclWI GGATC 4 cut(s) 252, 265, 560, 939
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 3 cut(s) 87, 399, 410
AfaI GTAC 1 cut(s) 806
AfiI CCNNNNNNNGG 2 cut(s) 97, 245
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 5 cut(s) 61, 196, 638, 859, 938
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 3 cut(s) 339, 862, 927
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
AluBI AGCT 2 cut(s) 117, 892
AluI AGCT 2 cut(s) 117, 892
Alw26I GTCTC 2 cut(s) 435, 560
AlwI GGATC 4 cut(s) 252, 265, 560, 939
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 4 cut(s) 35, 830, 833, 889
ApoI RAATTY 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 385, 399
AsuHPI GGTGA 4 cut(s) 317, 559, 601, 806
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 385
AxyI CCTNAGG 1 cut(s) 422
BamHI GGATCC 1 cut(s) 257
BauI CACGAG 1 cut(s) 465
BbvI GCAGC 4 cut(s) 47, 817, 845, 901
BccI CCATC 1 cut(s) 382
BciT130I CCWGG 3 cut(s) 341, 864, 929
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 2 cut(s) 435, 560
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 2 cut(s) 831, 916
BglII AGATCT 1 cut(s) 448
BisI GCNGC 4 cut(s) 36, 831, 834, 890
BlsI GCNGC 4 cut(s) 37, 832, 835, 891
Bme1390I CCNGG 3 cut(s) 341, 864, 929
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 385, 399
BmiI GGNNCC 2 cut(s) 259, 401
BmrFI CCNGG 3 cut(s) 341, 864, 929
BmsI GCATC 3 cut(s) 613, 804, 817
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 1 cut(s) 584
Bpu14I TTCGAA 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 339, 340, 758, 780
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 245
Bse21I CCTNAGG 1 cut(s) 422
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 3 cut(s) 341, 864, 929
BseDI CCNNGG 4 cut(s) 339, 340, 758, 780
BseGI GGATG 1 cut(s) 832
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 97, 245
BseMI GCAATG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 231, 815
BseXI GCAGC 4 cut(s) 47, 817, 845, 901
BshFI GGCC 1 cut(s) 400
BslFI GGGAC 2 cut(s) 38, 744
BslI CCNNNNNNNGG 2 cut(s) 97, 245
BsmAI GTCTC 2 cut(s) 435, 560
BsmFI GGGAC 2 cut(s) 38, 744
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 85
Bsp143I GATC 8 cut(s) 45, 257, 358, 448, 552, 649, 691, 931
Bsp19I CCATGG 1 cut(s) 780
BspANI GGCC 1 cut(s) 400
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 2 cut(s) 259, 401
BspMAI CTGCAG 1 cut(s) 835
BspPI GGATC 4 cut(s) 252, 265, 560, 939
BspT104I TTCGAA 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 216
BssECI CCNNGG 4 cut(s) 339, 340, 758, 780
BssMI GATC 8 cut(s) 45, 257, 358, 448, 552, 649, 691, 931
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 780
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 3 cut(s) 341, 864, 929
Bst4CI ACNGT 2 cut(s) 29, 243
Bst6I CTCTTC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 119, 398
BstDEI CTNAG 3 cut(s) 262, 422, 580
BstDSI CCRYGG 2 cut(s) 758, 780
BstF5I GGATG 1 cut(s) 832
BstKTI GATC 8 cut(s) 48, 260, 361, 451, 555, 652, 694, 934
BstMAI GTCTC 2 cut(s) 435, 560
BstMBI GATC 8 cut(s) 45, 257, 358, 448, 552, 649, 691, 931
BstNI CCWGG 3 cut(s) 341, 864, 929
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 3 cut(s) 339, 862, 927
BstSFI CTRYAG 2 cut(s) 831, 916
BstV1I GCAGC 4 cut(s) 47, 817, 845, 901
BstX2I RGATCY 3 cut(s) 257, 448, 931
BstYI RGATCY 3 cut(s) 257, 448, 931
Bsu36I CCTNAGG 1 cut(s) 422
BsuRI GGCC 1 cut(s) 400
BtgI CCRYGG 2 cut(s) 758, 780
BtsCI GGATG 1 cut(s) 832
Cac8I GCNNGC 2 cut(s) 119, 398
CciI TCATGA 1 cut(s) 694
Cfr13I GGNCC 2 cut(s) 385, 399
Csp6I GTAC 1 cut(s) 805
CviAII CATG 7 cut(s) 122, 141, 155, 272, 570, 695, 781
CviJI RGCY 7 cut(s) 101, 117, 199, 400, 562, 862, 892
CviKI_1 RGCY 7 cut(s) 101, 117, 199, 400, 562, 862, 892
CviQI GTAC 1 cut(s) 805
DdeI CTNAG 3 cut(s) 262, 422, 580
DpnI GATC 8 cut(s) 47, 259, 360, 450, 554, 651, 693, 933
DpnII GATC 8 cut(s) 45, 257, 358, 448, 552, 649, 691, 931
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 780
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 3 cut(s) 87, 399, 410
Eco81I CCTNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 3 cut(s) 339, 862, 927
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 780
EcoT22I ATGCAT 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 7 cut(s) 125, 144, 158, 275, 573, 698, 784
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 2 cut(s) 38, 744
FatI CATG 7 cut(s) 121, 140, 154, 271, 569, 694, 780
FauNDI CATATG 1 cut(s) 712
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 4 cut(s) 36, 831, 834, 890
FokI GGATG 1 cut(s) 839
Fsp4HI GCNGC 4 cut(s) 36, 831, 834, 890
FspBI CTAG 1 cut(s) 177
GluI GCNGC 4 cut(s) 36, 831, 834, 890
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 1 cut(s) 400
Hin1II CATG 7 cut(s) 125, 144, 158, 275, 573, 698, 784
HinfI GANTC 3 cut(s) 335, 638, 754
HphI GGTGA 4 cut(s) 317, 559, 601, 806
Hpy166II GTNNAC 1 cut(s) 668
Hpy188I TCNGA 6 cut(s) 379, 453, 535, 643, 722, 953
Hpy188III TCNNGA 4 cut(s) 465, 689, 695, 935
Hpy8I GTNNAC 1 cut(s) 668
HpyAV CCTTC 2 cut(s) 551, 915
HpyCH4III ACNGT 2 cut(s) 29, 243
HpyCH4IV ACGT 2 cut(s) 604, 854
HpyCH4V TGCA 7 cut(s) 121, 271, 281, 437, 683, 833, 889
HpyF3I CTNAG 3 cut(s) 262, 422, 580
HpySE526I ACGT 2 cut(s) 604, 854
Hsp92II CATG 7 cut(s) 125, 144, 158, 275, 573, 698, 784
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 8 cut(s) 45, 257, 358, 448, 552, 649, 691, 931
Lsp1109I GCAGC 4 cut(s) 47, 817, 845, 901
LweI GCATC 3 cut(s) 613, 804, 817
MaeI CTAG 1 cut(s) 177
MaeII ACGT 2 cut(s) 604, 854
MaeIII GTNAC 4 cut(s) 133, 572, 794, 850
MalI GATC 8 cut(s) 47, 259, 360, 450, 554, 651, 693, 933
MboI GATC 8 cut(s) 45, 257, 358, 448, 552, 649, 691, 931
MboII GAAGA 4 cut(s) 74, 173, 392, 778
MfeI CAATTG 2 cut(s) 300, 837
MflI RGATCY 3 cut(s) 257, 448, 931
MluCI AATT 4 cut(s) 222, 250, 300, 837
MmeI TCCRAC 1 cut(s) 49
Mph1103I ATGCAT 1 cut(s) 273
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 330
MspR9I CCNGG 3 cut(s) 341, 864, 929
MunI CAATTG 2 cut(s) 300, 837
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 3 cut(s) 341, 864, 929
NcoI CCATGG 1 cut(s) 780
NdeI CATATG 1 cut(s) 712
NdeII GATC 8 cut(s) 45, 257, 358, 448, 552, 649, 691, 931
NlaIII CATG 7 cut(s) 125, 144, 158, 275, 573, 698, 784
NlaIV GGNNCC 2 cut(s) 259, 401
NmuCI GTSAC 4 cut(s) 133, 572, 794, 850
NsiI ATGCAT 1 cut(s) 273
NspI RCATGY 1 cut(s) 573
NspV TTCGAA 1 cut(s) 85
PagI TCATGA 1 cut(s) 694
PasI CCCWGGG 1 cut(s) 340
PciI ACATGT 1 cut(s) 569
PctI GAATGC 1 cut(s) 7
PfeI GAWTC 3 cut(s) 335, 638, 754
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 4 cut(s) 37, 832, 835, 891
PpuMI RGGWCCY 1 cut(s) 385
PscI ACATGT 1 cut(s) 569
Psp1406I AACGTT 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 339, 862, 927
PspGI CCWGG 3 cut(s) 339, 862, 927
PspN4I GGNNCC 2 cut(s) 259, 401
PspPI GGNCC 2 cut(s) 385, 399
PspPPI RGGWCCY 1 cut(s) 385
PstI CTGCAG 1 cut(s) 835
PsuI RGATCY 3 cut(s) 257, 448, 931
RsaI GTAC 1 cut(s) 806
RsaNI GTAC 1 cut(s) 805
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 4 cut(s) 36, 831, 834, 890
Sau3AI GATC 8 cut(s) 45, 257, 358, 448, 552, 649, 691, 931
Sau96I GGNCC 2 cut(s) 385, 399
ScrFI CCNGG 3 cut(s) 341, 864, 929
SfaNI GCATC 3 cut(s) 613, 804, 817
SfcI CTRYAG 2 cut(s) 831, 916
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 330
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 4 cut(s) 222, 250, 300, 837
SspI AATATT 1 cut(s) 192
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 339, 862, 927
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 2 cut(s) 29, 243
TaiI ACGT 2 cut(s) 607, 857
TaqI TCGA 4 cut(s) 85, 555, 652, 908
TasI AATT 4 cut(s) 222, 250, 300, 837
TatI WGTACW 1 cut(s) 804
TfiI GAWTC 3 cut(s) 335, 638, 754
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseFI GTSAC 4 cut(s) 133, 572, 794, 850
TseI GCWGC 4 cut(s) 35, 830, 833, 889
Tsp45I GTSAC 4 cut(s) 133, 572, 794, 850
TspDTI ATGAA 1 cut(s) 711
TspGWI ACGGA 2 cut(s) 459, 747
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 222
XceI RCATGY 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XspI CTAG 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.