Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002732

Physical Location & Seq

Genomic Coordinates Forward (+)

22522790 .. 22527021

Gene Structure 4232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G182900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGGCATTCAGCAGCAGATTGGGATTATAGGGCAGCAATTGAGATTACAAAGGATTGGAATGGGGTGGAACAAGTCCTGCTTCAGAACCAACAAGGGGCTTCAGCCCGGGTTAGCTTACATGGAGGACAGGTCACATCCTGGAGGAATAAGCACGGGGAAGAACTCCTATTCACTAGTAGTAAGGCAATCTTCAAGCCTCCAAAAGCAATGCGAGGAGGAATTCCCATTTGTTTTCCGCAGTTTGGGAACTGTGGATCACTTGAACAGCATGGTTTTGCGAGGAACAAGGTCTGGGCGATTGATGATAATCCTCAGCTGCATCCCCCAAATGATTCCCATGGAAAATCCTTCATTGATCTACTGCTTAAACCATCTGAAGATGACCTGAAGTGCTGGCCTCATAGCTTTGAGTTTCGCCTTAGGGTGTCTCTTGCAACAAGTGGAGATCTGACCCTGACATCACGAGTTAGGAATGTCAATGGCAAGCCATTCAGTTTCTCGTTCGCCTACCACACTTATTTTTTGGTTTCTGATATAAGTGAGGTGAGGATAGAAGGGCTGGAGACACTTGATTACTTAGACAACCTTTGCGAAAGAAAACGTTTTACAGAACAAGGAGATGCCATAACTTTTGAATCTGAGGTCAGTCGTCTGTATCTAAGTTCGCCAAATGTAATTGCAGTCCTTGATCATGAGAAAAAGCGGACATATGTAATCAGAAAGGAAGGACTACCAGATGTTTCTGTTTGGAATCCATGGGAGAAAAAATCGAAATCTATGGTTGATTTTGGCGATGAGGAGTACAAACAGATGCTTTGCGTGGACGGGGCAGCGATCGAGAAACCTATCACCTTGAAGCCAGGCGAGGAATGGACAGGGCGGTTGCAGCTATCAGTTGTGCCTTCGAGTTTCTGTAGTGAGCACCTTGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

313

Amino Acids

35.32

Weight (kDa)

5.83

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61610 AT3G61610
fragaria_vesca	FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830
malus_domestica	MD01G1074800.v1.1 MD07G1143900.v1.1
prunus_persica	Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1
pyrus_communis	pycom01g10390
rosa_chinensis	RchiOBHm_Chr1g0358641
rosa_laevigata	RLG00000027939
rosa_multiflora	Rmu_sc0001609.1_g000023
rosa_roxburghii	Rroxscaffold_4G00297740
rosa_rugosa	Rorug01G0263100 Rorug01G0263200 Rorug01G0263300 Rorug01G0263400 Rorug01G0263500 Rorug01G0263500 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263700
rosa_samantha	Rh1AG278300 Rh1CG261700 Rh1DG273100
rosa_wichuraiana	Rw1G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	239, 706, 883
AclI	AACGTT	1 cut(s)	604
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	4 cut(s)	68, 87, 399, 410
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	2 cut(s)	97, 245
AgsI	TTSAA	4 cut(s)	196, 266, 638, 859
AhlI	ACTAGT	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	140, 862
AluBI	AGCT	4 cut(s)	117, 319, 408, 892
AluI	AGCT	4 cut(s)	117, 319, 408, 892
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	2 cut(s)	435, 560
AlwI	GGATC	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	5 cut(s)	14, 35, 319, 833, 889
ApoI	RAATTY	1 cut(s)	222
AsuC2I	CCSGG	2 cut(s)	109, 110
AsuHPI	GGTGA	2 cut(s)	559, 844
AvaI	CYCGRG	1 cut(s)	108
AxyI	CCTNAGG	1 cut(s)	422
BauI	CACGAG	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	927
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	5 cut(s)	26, 47, 306, 845, 901
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	142, 864
BclI	TGATCA	1 cut(s)	691
BcnI	CCSGG	2 cut(s)	109, 110
BcoDI	GTCTC	2 cut(s)	435, 560
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	916
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	5 cut(s)	15, 36, 320, 834, 890
BlsI	GCNGC	5 cut(s)	16, 37, 321, 835, 891
Bme1390I	CCNGG	4 cut(s)	109, 110, 142, 864
BmeT110I	CYCGRG	1 cut(s)	108
BmrFI	CCNGG	4 cut(s)	109, 110, 142, 864
BmsI	GCATC	3 cut(s)	331, 613, 804
BpmI	CTGGAG	2 cut(s)	163, 584
Bpu10I	CCTNAGC	1 cut(s)	315
BpuMI	CCSGG	2 cut(s)	109, 110
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	108, 340, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 245
Bse21I	CCTNAGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	142, 864
BseDI	CCNNGG	3 cut(s)	108, 340, 758
BseGI	GGATG	2 cut(s)	137, 322
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	97, 245
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	329, 633
BseRI	GAGGAG	2 cut(s)	231, 815
BseXI	GCAGC	5 cut(s)	26, 47, 306, 845, 901
Bsh1285I	CGRYCG	1 cut(s)	840
BshFI	GGCC	1 cut(s)	400
BsiEI	CGRYCG	1 cut(s)	840
BsiHKAI	GWGCWC	1 cut(s)	927
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	97, 245
BsmAI	GTCTC	2 cut(s)	435, 560
BsmI	GAATGC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp143I	GATC	6 cut(s)	257, 358, 448, 691, 837, 931
Bsp19I	CCATGG	2 cut(s)	340, 758
BspACI	CCGC	3 cut(s)	239, 706, 883
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	2 cut(s)	328, 634
BspHI	TCATGA	1 cut(s)	694
BspPI	GGATC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	108, 340, 758
BssMI	GATC	6 cut(s)	257, 358, 448, 691, 837, 931
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	2 cut(s)	340, 758
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	142, 864
Bst4CI	ACNGT	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	398, 488
BstDEI	CTNAG	5 cut(s)	315, 422, 580, 642, 662
BstDSI	CCRYGG	2 cut(s)	340, 758
BstF5I	GGATG	2 cut(s)	137, 322
BstKTI	GATC	6 cut(s)	260, 361, 451, 694, 840, 934
BstMAI	GTCTC	2 cut(s)	435, 560
BstMBI	GATC	6 cut(s)	257, 358, 448, 691, 837, 931
BstMCI	CGRYCG	1 cut(s)	840
BstMWI	GCNNNNNNNGC	1 cut(s)	889
BstNI	CCWGG	2 cut(s)	142, 864
BstSCI	CCNGG	4 cut(s)	107, 108, 140, 862
BstSFI	CTRYAG	1 cut(s)	916
BstV1I	GCAGC	5 cut(s)	26, 47, 306, 845, 901
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	400
BtgI	CCRYGG	2 cut(s)	340, 758
BtgZI	GCGATG	1 cut(s)	810
BtsCI	GGATG	2 cut(s)	137, 322
Cac8I	GCNNGC	2 cut(s)	398, 488
CciI	TCATGA	1 cut(s)	694
Cfr9I	CCCGGG	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	5 cut(s)	122, 272, 341, 695, 759
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	5 cut(s)	315, 422, 580, 642, 662
DpnI	GATC	6 cut(s)	259, 360, 450, 693, 839, 933
DpnII	GATC	6 cut(s)	257, 358, 448, 691, 837, 931
Eco130I	CCWWGG	2 cut(s)	340, 758
Eco57I	CTGAAG	4 cut(s)	68, 87, 399, 410
Eco81I	CCTNAGG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	140, 862
EcoT14I	CCWWGG	2 cut(s)	340, 758
ErhI	CCWWGG	2 cut(s)	340, 758
FaeI	CATG	5 cut(s)	125, 275, 344, 698, 762
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 176, 208
FatI	CATG	5 cut(s)	121, 271, 340, 694, 758
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	5 cut(s)	15, 36, 320, 834, 890
FokI	GGATG	2 cut(s)	124, 309
Fsp4HI	GCNGC	5 cut(s)	15, 36, 320, 834, 890
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	5 cut(s)	15, 36, 320, 834, 890
GsuI	CTGGAG	2 cut(s)	163, 584
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	5 cut(s)	125, 275, 344, 698, 762
HinfI	GANTC	3 cut(s)	335, 638, 754
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	2 cut(s)	559, 844
Hpy166II	GTNNAC	1 cut(s)	826
Hpy188I	TCNGA	6 cut(s)	87, 379, 453, 535, 643, 722
Hpy188III	TCNNGA	3 cut(s)	465, 695, 841
Hpy8I	GTNNAC	1 cut(s)	826
HpyAV	CCTTC	4 cut(s)	361, 551, 722, 915
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	4 cut(s)	322, 437, 683, 889
HpyF10VI	GCNNNNNNNGC	1 cut(s)	889
HpyF3I	CTNAG	5 cut(s)	315, 422, 580, 642, 662
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	5 cut(s)	125, 275, 344, 698, 762
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	6 cut(s)	257, 358, 448, 691, 837, 931
Lsp1109I	GCAGC	5 cut(s)	26, 47, 306, 845, 901
LweI	GCATC	3 cut(s)	331, 613, 804
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	6 cut(s)	259, 360, 450, 693, 839, 933
MboI	GATC	6 cut(s)	257, 358, 448, 691, 837, 931
MboII	GAAGA	3 cut(s)	173, 184, 392
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	3 cut(s)	39, 222, 678
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	4 cut(s)	109, 110, 142, 864
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	7
MvaI	CCWGG	2 cut(s)	142, 864
MwoI	GCNNNNNNNGC	1 cut(s)	889
NciI	CCSGG	2 cut(s)	109, 110
NcoI	CCATGG	2 cut(s)	340, 758
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	6 cut(s)	257, 358, 448, 691, 837, 931
NlaIII	CATG	5 cut(s)	125, 275, 344, 698, 762
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	694
PctI	GAATGC	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	335, 638, 754
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	16, 37, 321, 835, 891
Ple19I	CGATCG	1 cut(s)	840
Psp1406I	AACGTT	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	140, 862
PspGI	CCWGG	2 cut(s)	140, 862
PsuI	RGATCY	1 cut(s)	448
PvuI	CGATCG	1 cut(s)	840
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	5 cut(s)	15, 36, 320, 834, 890
Sau3AI	GATC	6 cut(s)	257, 358, 448, 691, 837, 931
ScrFI	CCNGG	4 cut(s)	109, 110, 142, 864
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	3 cut(s)	331, 613, 804
SfcI	CTRYAG	1 cut(s)	916
SmaI	CCCGGG	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	3 cut(s)	39, 222, 678
SsiI	CCGC	3 cut(s)	239, 706, 883
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	107, 108, 140, 862
StyI	CCWWGG	2 cut(s)	340, 758
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	3 cut(s)	773, 840, 908
TasI	AATT	3 cut(s)	39, 222, 678
TatI	WGTACW	1 cut(s)	804
TfiI	GAWTC	3 cut(s)	335, 638, 754
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	5 cut(s)	14, 35, 319, 833, 889
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	343
TspMI	CCCGGG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XmaI	CCCGGG	1 cut(s)	108
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.