Rroxscaffold_4G00297740

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002732
Physical Location & Seq
Forward (+)
17613563 .. 17617786
4224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297740.1

Sequence Viewer

Length: 1008 bp
ATGGGGCATTCATCAGCAGTCTGGGACTATAAGGCAGCAATTGAGAAAACAAAGGACTTGAATGGGGTCAGACAAGTTGTTCTTCGAAACCCACAAGGGGCTTCAGCGCAGGTTAGCTTGCATGGAGGACAGGTCACATCATGGAGGAATGAGCATGGAGAAGAACTCCTATTCACTAGTAGTAAGGCAATCTTCAAGCCTCCAAAAGCAATGCGAGGAGGAATTCCCATTTGTTTCCCACAGTTTGGGAATTGTGGATCTTTAGAACTACATGGTTTTGCAAGAAACAAGCTCTGGGCAATTGATGATAATCCTCCAGTGCTTCGCCCAAATGAGTCCCAAGGAAAATCATTTGTTGATCTACTTCTTAAACCATCTGAAGAGGACCTGAAGTTCTGGCCCCATAGTTTTGAGTTTCGCCTAAGGGTGTCTCTTGCAATGAATGGAGATCTGACCCTGATATCACGAGTCAGGAATGTGAATAGCAAGATGTTTAGTTTCTCTTTTGCCTACCACACTTACTTTTTGGTTTCTGACATAAGTGAGGTGAGGATCGAAGGGCTGGAGACGTGTGACTACTTAGACAACCTTTGTCACAGGGAACGTTTCACAGAACAAGGAGATGCCTTAACTTTTGAATCAGAGGTTGATCGACTTTATCTAAGTTCACACAAAGTAATTGCAGTTCTTGATCATGAAAAAAAACAGACATATGTAATCAGAAAGGAAGGACTACCAGATGTTGTTGTTTGGAATCCATGGGAGAAGAAATCAAAATCCATGGTTGATTTTGGTGACGAGGAATATAAGCAGATGCTTTGTGTGGATGCTGCGGCAATTGAGAAACCCATCACCCTGAAGCCAGGAGAGGAATGGACAGGGAGGTTGCAGCTCTCTGTTGTGCCTTCGAGTTTCTGTAGTGAGAACCTGGATCTTGAGAAGGGGGTTTTTGAAGAACAGTACAGAACTTCTAGGGAAAAAAGTGCTTTAGTTAATGGTAGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

335

Amino Acids

38.11

Weight (kDa)

5.91

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 25 - 298 3.5e-70 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 245
AciI CCGC 1 cut(s) 833
AclI AACGTT 1 cut(s) 604
AclWI GGATC 3 cut(s) 265, 560, 939
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 4 cut(s) 87, 399, 410, 878
AfaI GTAC 1 cut(s) 962
AfiI CCNNNNNNNGG 2 cut(s) 97, 245
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 4 cut(s) 61, 196, 638, 953
AhlI ACTAGT 1 cut(s) 176
AjiI CACGTC 1 cut(s) 570
AjnI CCWGG 2 cut(s) 862, 927
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 4 cut(s) 117, 292, 892, 1002
AluI AGCT 4 cut(s) 117, 292, 892, 1002
Alw26I GTCTC 2 cut(s) 435, 560
AlwI GGATC 3 cut(s) 265, 560, 939
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 3 cut(s) 35, 830, 889
ApoI RAATTY 1 cut(s) 222
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 2 cut(s) 385, 399
AsuHPI GGTGA 3 cut(s) 559, 806, 844
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 385
AxyI CCTNAGG 1 cut(s) 422
BauI CACGAG 1 cut(s) 465
BbvI GCAGC 3 cut(s) 47, 817, 901
BccI CCATC 2 cut(s) 382, 857
BciT130I CCWGG 2 cut(s) 864, 929
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 2 cut(s) 435, 560
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 3 cut(s) 177, 972, 1006
BfmI CTRYAG 1 cut(s) 916
BfuAI ACCTGC 1 cut(s) 100
BglII AGATCT 1 cut(s) 448
BisI GCNGC 4 cut(s) 36, 831, 834, 890
BlsI GCNGC 4 cut(s) 37, 832, 835, 891
Bme1390I CCNGG 2 cut(s) 864, 929
Bme18I GGWCC 1 cut(s) 385
BmgBI CACGTC 1 cut(s) 570
BmgT120I GGNCC 2 cut(s) 385, 399
BmiI GGNNCC 1 cut(s) 401
BmrFI CCNGG 2 cut(s) 864, 929
BmsI GCATC 3 cut(s) 613, 804, 817
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 2 cut(s) 300, 584
Bpu14I TTCGAA 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 956
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 340, 758, 780
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 245
Bse1I ACTGG 1 cut(s) 317
Bse21I CCTNAGG 1 cut(s) 422
Bse3DI GCAATG 2 cut(s) 216, 444
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 2 cut(s) 864, 929
BseDI CCNNGG 3 cut(s) 340, 758, 780
BseGI GGATG 1 cut(s) 832
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 97, 245
BseMI GCAATG 2 cut(s) 216, 444
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 3 cut(s) 47, 817, 901
BshFI GGCC 1 cut(s) 400
BslFI GGGAC 2 cut(s) 38, 322
BslI CCNNNNNNNGG 2 cut(s) 97, 245
BsmAI GTCTC 2 cut(s) 435, 560
BsmBI CGTCTC 1 cut(s) 560
BsmFI GGGAC 2 cut(s) 38, 322
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 85
Bsp143I GATC 7 cut(s) 257, 358, 448, 552, 649, 691, 931
Bsp19I CCATGG 2 cut(s) 758, 780
BspACI CCGC 1 cut(s) 833
BspANI GGCC 1 cut(s) 400
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 401
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 3 cut(s) 265, 560, 939
BspT104I TTCGAA 1 cut(s) 85
BsrDI GCAATG 2 cut(s) 216, 444
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 340, 758, 780
BssMI GATC 7 cut(s) 257, 358, 448, 552, 649, 691, 931
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 3 cut(s) 340, 758, 780
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 864, 929
Bst4CI ACNGT 2 cut(s) 243, 960
Bst6I CTCTTC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 3 cut(s) 422, 580, 662
BstDSI CCRYGG 2 cut(s) 758, 780
BstF5I GGATG 1 cut(s) 832
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 7 cut(s) 260, 361, 451, 555, 652, 694, 934
BstMAI GTCTC 2 cut(s) 435, 560
BstMBI GATC 7 cut(s) 257, 358, 448, 552, 649, 691, 931
BstNI CCWGG 2 cut(s) 864, 929
BstSCI CCNGG 2 cut(s) 862, 927
BstSFI CTRYAG 1 cut(s) 916
BstV1I GCAGC 3 cut(s) 47, 817, 901
BstX2I RGATCY 3 cut(s) 257, 448, 931
BstYI RGATCY 3 cut(s) 257, 448, 931
Bsu36I CCTNAGG 1 cut(s) 422
BsuRI GGCC 1 cut(s) 400
BtgI CCRYGG 2 cut(s) 758, 780
BtrI CACGTC 1 cut(s) 570
BtsCI GGATG 1 cut(s) 832
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 119
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 385, 399
Csp6I GTAC 1 cut(s) 961
CviAII CATG 7 cut(s) 122, 141, 155, 272, 695, 759, 781
CviJI RGCY 9 cut(s) 101, 117, 199, 292, 400, 562, 862, 892, 1002
CviKI_1 RGCY 9 cut(s) 101, 117, 199, 292, 400, 562, 862, 892, 1002
CviQI GTAC 1 cut(s) 961
DdeI CTNAG 3 cut(s) 422, 580, 662
DpnI GATC 7 cut(s) 259, 360, 450, 554, 651, 693, 933
DpnII GATC 7 cut(s) 257, 358, 448, 552, 649, 691, 931
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 3 cut(s) 340, 758, 780
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 4 cut(s) 87, 399, 410, 878
Eco81I CCTNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 862, 927
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 3 cut(s) 340, 758, 780
ErhI CCWWGG 3 cut(s) 340, 758, 780
Esp3I CGTCTC 1 cut(s) 560
FaeI CATG 7 cut(s) 125, 144, 158, 275, 698, 762, 784
FalI AAGNNNNNCTT 4 cut(s) 66, 98, 176, 208
FaqI GGGAC 2 cut(s) 38, 322
FatI CATG 7 cut(s) 121, 140, 154, 271, 694, 758, 780
FauNDI CATATG 1 cut(s) 712
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 4 cut(s) 36, 831, 834, 890
FokI GGATG 1 cut(s) 839
Fsp4HI GCNGC 4 cut(s) 36, 831, 834, 890
FspBI CTAG 3 cut(s) 177, 972, 1006
GlaI GCGC 1 cut(s) 108
GluI GCNGC 4 cut(s) 36, 831, 834, 890
GsuI CTGGAG 2 cut(s) 300, 584
HaeIII GGCC 1 cut(s) 400
HhaI GCGC 1 cut(s) 109
Hin1II CATG 7 cut(s) 125, 144, 158, 275, 698, 762, 784
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 4 cut(s) 335, 468, 638, 754
HphI GGTGA 3 cut(s) 559, 806, 844
Hpy166II GTNNAC 1 cut(s) 668
Hpy188I TCNGA 6 cut(s) 71, 379, 453, 535, 643, 722
Hpy188III TCNNGA 5 cut(s) 465, 472, 689, 695, 935
Hpy8I GTNNAC 1 cut(s) 668
HpyAV CCTTC 4 cut(s) 551, 722, 915, 934
HpyCH4III ACNGT 2 cut(s) 243, 960
HpyCH4IV ACGT 2 cut(s) 569, 604
HpyCH4V TGCA 5 cut(s) 121, 281, 437, 683, 889
HpyF3I CTNAG 3 cut(s) 422, 580, 662
HpySE526I ACGT 2 cut(s) 569, 604
Hsp92II CATG 7 cut(s) 125, 144, 158, 275, 698, 762, 784
HspAI GCGC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 7 cut(s) 257, 358, 448, 552, 649, 691, 931
Lsp1109I GCAGC 3 cut(s) 47, 817, 901
LweI GCATC 3 cut(s) 613, 804, 817
MaeI CTAG 3 cut(s) 177, 972, 1006
MaeII ACGT 2 cut(s) 569, 604
MaeIII GTNAC 4 cut(s) 133, 572, 593, 794
MalI GATC 7 cut(s) 259, 360, 450, 554, 651, 693, 933
MboI GATC 7 cut(s) 257, 358, 448, 552, 649, 691, 931
MboII GAAGA 6 cut(s) 74, 173, 184, 392, 778, 965
MfeI CAATTG 3 cut(s) 39, 300, 837
MflI RGATCY 3 cut(s) 257, 448, 931
MluCI AATT 6 cut(s) 39, 222, 250, 300, 678, 837
MlyI GAGTC 2 cut(s) 344, 477
MseI TTAA 3 cut(s) 369, 629, 993
MspR9I CCNGG 2 cut(s) 864, 929
MunI CAATTG 3 cut(s) 39, 300, 837
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 2 cut(s) 864, 929
NcoI CCATGG 2 cut(s) 758, 780
NdeI CATATG 1 cut(s) 712
NdeII GATC 7 cut(s) 257, 358, 448, 552, 649, 691, 931
NlaIII CATG 7 cut(s) 125, 144, 158, 275, 698, 762, 784
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 4 cut(s) 133, 572, 593, 794
NspV TTCGAA 1 cut(s) 85
PagI TCATGA 1 cut(s) 694
PctI GAATGC 1 cut(s) 7
PfeI GAWTC 2 cut(s) 638, 754
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 4 cut(s) 37, 832, 835, 891
PleI GAGTC 2 cut(s) 343, 476
PpsI GAGTC 2 cut(s) 343, 476
PpuMI RGGWCCY 1 cut(s) 385
Psp1406I AACGTT 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 862, 927
PspGI CCWGG 2 cut(s) 862, 927
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 2 cut(s) 385, 399
PspPPI RGGWCCY 1 cut(s) 385
PsrI GAACNNNNNNTAC 2 cut(s) 669, 701
PsuI RGATCY 3 cut(s) 257, 448, 931
RsaI GTAC 1 cut(s) 962
RsaNI GTAC 1 cut(s) 961
SaqAI TTAA 3 cut(s) 369, 629, 993
SatI GCNGC 4 cut(s) 36, 831, 834, 890
Sau3AI GATC 7 cut(s) 257, 358, 448, 552, 649, 691, 931
Sau96I GGNCC 2 cut(s) 385, 399
SchI GAGTC 2 cut(s) 344, 477
ScrFI CCNGG 2 cut(s) 864, 929
SfaNI GCATC 3 cut(s) 613, 804, 817
SfcI CTRYAG 1 cut(s) 916
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 935
SmoI CTYRAG 1 cut(s) 935
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 6 cut(s) 39, 222, 250, 300, 678, 837
SsiI CCGC 1 cut(s) 833
SspMI CTAG 3 cut(s) 177, 972, 1006
StyD4I CCNGG 2 cut(s) 862, 927
StyI CCWWGG 3 cut(s) 340, 758, 780
TaaI ACNGT 2 cut(s) 243, 960
TaiI ACGT 2 cut(s) 572, 607
TaqI TCGA 4 cut(s) 85, 555, 652, 908
TasI AATT 6 cut(s) 39, 222, 250, 300, 678, 837
TatI WGTACW 1 cut(s) 960
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 2 cut(s) 638, 754
Tru1I TTAA 3 cut(s) 369, 629, 993
Tru9I TTAA 3 cut(s) 369, 629, 993
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 4 cut(s) 133, 572, 593, 794
TseI GCWGC 3 cut(s) 35, 830, 889
Tsp45I GTSAC 4 cut(s) 133, 572, 593, 794
TspDTI ATGAA 2 cut(s) 455, 711
TspRI CASTG 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XspI CTAG 3 cut(s) 177, 972, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.