Rorug01G0263600

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002732
Physical Location & Seq
Forward (+)
37350414 .. 37361145
10732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0263600.1

Sequence Viewer

Length: 1881 bp
ATGAATGAGTGGTCAACCAAAGATGCAGTGGCAATTGAGCTACGTATTTTCGAAGAAGATCGAGGAAAAAGTACAACAGTGAGGGAAAAGCTCACAGCAGAAACTCATCAGGCCAAGAATTGGTGGAATACAATCTTTATTATATTATGTGCATGTGCTGTCTTCAATGATCCTATCTTCTGTTATATCACGGCCATTGACAACGAAAATAAGTGCTTCACGATGAACAAGAATTTGGCGAAGAATTATGTTTATACTCGAACAGCCACAGATGTTTTTTACCTGCTGGACTTTTTTATTTCTAAGTGTGGATGTTGTTGCTGTAGAGGTAGGAGATCATCCAAGTCATGCGTTGCTAAGATGTTATCCATTATGTCTCGCATCTTCGTCTCTCTCCCCATTGCACAGATATATGCAGCAGGGGGGATGAATGCAGATCTACACCCTTTTATTAGAGAGTATCTTCTTTTCACTTGGCTTCAATATGCATTACGGATTTACTACATCCATGATTGGTTAAAGCGGCGTCCTATCATAGACATAACCCGAGTAAAAAGATGGATCAGACCTATATTGGGTTTTTTTCCCTTCATCCTTGCTTCTCATCTTTTTGGAGCCTTCTGGTACCTTTTTGCAACTCGGAGACAGCTTCGCTGTTGGTTATCGACGACCCATAAAATCATCGCTGATAGTCGAACTACTCTAGGTCCAGGATATATGACATATATGTGTGCAATGAATCCCAATGAAACCTATTATAATGATACTAAAATCTGGCTTTGGGATGAATTATGCCCTTTGAAAGAAGCTGATCCAAAGGCGTTCGACGCTGGCATATATTTTTACGCTCTGCAATCTAATGTGGTTAGTCCATCGCATCCTCTCTTACAAAGAGTATTCCAGTCTTTTTGGTGGGCTCTACGAAATATGAGTTCTTTTGGCTCAAATCTATGTAGCAGTATGGATACGTTGGAAATCTTCTTTTCTGTTATGATATCTGCAACTGGCATGGCACTGTTTTTAGTATATCTCAATGCAATGGTGCAGGAGTCGAAAGAAAGGTCAAATAAGCGTATGTTGAAAGAGAAGAAGCAATTGATGAAACCAGATGTCGATCTGTGGTTATCTAAATACTACCCCTCTAAGGATAACGAAAAAATGGAGACCGGGGAGAGAAATGAAAATTTAAAGGCAGCGATCATGGAAAACATACACAAACTCAGAGAAAACAGTGATCTTGATGTGCAAAATATCCTTGGTATTCTTCCCATAAAAGACAAACAAAGCATCATGTCTTTTCTCTTCTCAGCTTCATTGAAGAAGGAGCCAATGTTTCAAACCATACATAAAAAGGTGCTAAAAGCAATTTGTCAACATCTTGTGCCACTGACCTACACTGAAGATAGCTATATTGTCCAAGAAGGGAAACCACTTGGGAAGATGCTCCTATTCATTCAAGGCACTGCAGTAACCTACTCCCATGGTGAAACCAGCAGTGATTCCTCAAGCAACAAGTGGCTTGAAAAAGGAGATTTTTATGGCGATGAACTCCTAAATTGGGCATTCAAATCTCCCTTGTTTTCTGATTTACCTATCTCGACTACGAATGTCGTCGCCCAAGAAAAGGTTGAAGCATTTGCTATTAGAGCCAAAGACTTGAAGAGTATTTGCTTTAAATTCTGGTGGCTTTTTAGTAGAGAAGTAAATGCCTCTCAATTGGAGCAGTGGAAGCATTTGGCAGCATCTTCCATACAAACAACCTGGCGCCATCGTCAAGTAAGGATCCGTTTGGCAGCGTCTTATGTACAACCAAACAGTTGCCTCCATCATCGTGCAAAGCCTGTAGGCTCAACTCACTGGAACAAAATTGTCGTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

626

Amino Acids

72.73

Weight (kDa)

9.13

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
Acc36I ACCTGC 1 cut(s) 291
Acc65I GGTACC 1 cut(s) 624
AccB1I GGYRCC 2 cut(s) 624, 1764
AccB7I CCANNNNNTGG 1 cut(s) 120
AciI CCGC 1 cut(s) 523
AclWI GGATC 5 cut(s) 164, 569, 806, 1777, 1790
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 3 cut(s) 232, 1183, 1676
AcuI CTGAAG 1 cut(s) 1419
AcyI GRCGYC 2 cut(s) 526, 1765
AfaI GTAC 3 cut(s) 73, 626, 1806
AfiI CCNNNNNNNGG 5 cut(s) 120, 575, 1144, 1558, 1624
AjnI CCWGG 2 cut(s) 709, 1760
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 6 cut(s) 40, 91, 649, 809, 1310, 1407
AluI AGCT 6 cut(s) 40, 91, 649, 809, 1310, 1407
Alw26I GTCTC 4 cut(s) 381, 394, 637, 1157
AlwI GGATC 5 cut(s) 164, 569, 806, 1777, 1790
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 2 cut(s) 111, 192
ApeKI GCWGC 4 cut(s) 416, 1193, 1739, 1793
ApoI RAATTY 3 cut(s) 232, 1183, 1676
ArsI GACNNNNNNTTYG 2 cut(s) 1046, 1078
Asp718I GGTACC 1 cut(s) 624
AspLEI GCGC 1 cut(s) 1767
AspS9I GGNCC 1 cut(s) 707
AsuC2I CCSGG 1 cut(s) 1168
AsuHPI GGTGA 1 cut(s) 1496
AsuII TTCGAA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 707
BamHI GGATCC 1 cut(s) 1782
BanI GGYRCC 2 cut(s) 624, 1764
BanII GRGCYC 1 cut(s) 919
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 4 cut(s) 428, 1205, 1751, 1805
BccI CCATC 4 cut(s) 552, 880, 1776, 1833
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 2 cut(s) 711, 1762
BciVI GTATCC 1 cut(s) 958
BcnI CCSGG 1 cut(s) 1168
BcoDI GTCTC 4 cut(s) 381, 394, 637, 1157
BfaI CTAG 1 cut(s) 704
BfmI CTRYAG 3 cut(s) 322, 1464, 1842
BfoI RGCGCY 1 cut(s) 1768
BfuAI ACCTGC 1 cut(s) 291
BfuI GTATCC 1 cut(s) 958
BglII AGATCT 1 cut(s) 436
BisI GCNGC 5 cut(s) 417, 524, 1194, 1740, 1794
BlsI GCNGC 5 cut(s) 418, 525, 1195, 1741, 1795
Bme1390I CCNGG 3 cut(s) 711, 1168, 1762
Bme18I GGWCC 1 cut(s) 707
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 5 cut(s) 616, 626, 1326, 1766, 1784
BmrFI CCNGG 3 cut(s) 711, 1168, 1762
BmsI GCATC 6 cut(s) 13, 390, 886, 1296, 1431, 1751
BpiI GAAGAC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 1489
BpuMI CCSGG 1 cut(s) 1168
BsaAI YACGTR 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 1113
BsaHI GRCGYC 2 cut(s) 526, 1765
BsaI GGTCTC 1 cut(s) 1157
BsaJI CCNNGG 3 cut(s) 1167, 1255, 1480
BsaXI ACNNNNNCTCC 2 cut(s) 1316, 1346
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 575, 1144, 1558, 1624
Bse1I ACTGG 3 cut(s) 901, 1009, 1862
Bse3DI GCAATG 3 cut(s) 399, 741, 1044
Bse8I GATNNNNATC 1 cut(s) 1113
BseBI CCWGG 2 cut(s) 711, 1762
BseDI CCNNGG 3 cut(s) 1167, 1255, 1480
BseGI GGATG 7 cut(s) 317, 338, 432, 504, 591, 790, 877
BseJI GATNNNNATC 1 cut(s) 1113
BseLI CCNNNNNNNGG 5 cut(s) 120, 575, 1144, 1558, 1624
BseMI GCAATG 3 cut(s) 399, 741, 1044
BseMII CTCAG 2 cut(s) 1234, 1320
BseNI ACTGG 3 cut(s) 901, 1009, 1862
BseXI GCAGC 4 cut(s) 428, 1205, 1751, 1805
BsgI GTGCAG 1 cut(s) 1064
BshFI GGCC 2 cut(s) 113, 194
BshNI GGYRCC 2 cut(s) 624, 1764
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 1167
BslI CCNNNNNNNGG 5 cut(s) 120, 575, 1144, 1558, 1624
BsmAI GTCTC 4 cut(s) 381, 394, 637, 1157
BsmBI CGTCTC 1 cut(s) 394
BsmI GAATGC 2 cut(s) 436, 1562
BsnI GGCC 2 cut(s) 113, 194
Bso31I GGTCTC 1 cut(s) 1157
BsoBI CYCGRG 1 cut(s) 546
Bsp119I TTCGAA 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 919
Bsp1407I TGTACA 1 cut(s) 1804
Bsp19I CCATGG 1 cut(s) 1480
BspACI CCGC 1 cut(s) 523
BspANI GGCC 2 cut(s) 113, 194
BspCNI CTCAG 2 cut(s) 1233, 1319
BspLI GGNNCC 5 cut(s) 616, 626, 1326, 1766, 1784
BspMAI CTGCAG 1 cut(s) 1468
BspMI ACCTGC 1 cut(s) 291
BspPI GGATC 5 cut(s) 164, 569, 806, 1777, 1790
BspT104I TTCGAA 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 624, 1764
BspTNI GGTCTC 1 cut(s) 1157
BsrDI GCAATG 3 cut(s) 399, 741, 1044
BsrGI TGTACA 1 cut(s) 1804
BsrI ACTGG 3 cut(s) 901, 1009, 1862
BssECI CCNNGG 3 cut(s) 1167, 1255, 1480
BssNI GRCGYC 2 cut(s) 526, 1765
BssT1I CCWWGG 2 cut(s) 1255, 1480
Bst2UI CCWGG 2 cut(s) 711, 1762
Bst4CI ACNGT 4 cut(s) 79, 1017, 1232, 1817
Bst6I CTCTTC 2 cut(s) 1307, 1655
BstACI GRCGYC 2 cut(s) 526, 1765
BstAUI TGTACA 1 cut(s) 1804
BstBAI YACGTR 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 832
BstDEI CTNAG 5 cut(s) 303, 357, 1143, 1220, 1306
BstDSI CCRYGG 1 cut(s) 1480
BstF5I GGATG 7 cut(s) 317, 338, 432, 504, 591, 790, 877
BstH2I RGCGCY 1 cut(s) 1768
BstHHI GCGC 1 cut(s) 1767
BstMAI GTCTC 4 cut(s) 381, 394, 637, 1157
BstMWI GCNNNNNNNGC 3 cut(s) 827, 1646, 1729
BstNI CCWGG 2 cut(s) 711, 1762
BstNSI RCATGY 1 cut(s) 156
BstSCI CCNGG 3 cut(s) 709, 1166, 1760
BstSFI CTRYAG 3 cut(s) 322, 1464, 1842
BstSNI TACGTA 1 cut(s) 44
BstV1I GCAGC 4 cut(s) 428, 1205, 1751, 1805
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 2 cut(s) 436, 1782
BstYI RGATCY 2 cut(s) 436, 1782
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 2 cut(s) 113, 194
BtgI CCRYGG 1 cut(s) 1480
BtgZI GCGATG 3 cut(s) 667, 858, 1557
BtsCI GGATG 7 cut(s) 317, 338, 432, 504, 591, 790, 877
BtsI GCAGTG 4 cut(s) 33, 1461, 1501, 1730
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 832
CfoI GCGC 1 cut(s) 1767
Cfr13I GGNCC 1 cut(s) 707
CseI GACGC 3 cut(s) 515, 836, 1785
Csp6I GTAC 3 cut(s) 72, 625, 1805
CviAII CATG 7 cut(s) 153, 348, 509, 1009, 1201, 1291, 1481
CviQI GTAC 3 cut(s) 72, 625, 1805
DdeI CTNAG 5 cut(s) 303, 357, 1143, 1220, 1306
DinI GGCGCC 1 cut(s) 1766
DraI TTTAAA 2 cut(s) 1188, 1675
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 1307, 1655
EarI CTCTTC 2 cut(s) 1307, 1655
Eco105I TACGTA 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 1255, 1480
Eco24I GRGCYC 1 cut(s) 919
Eco31I GGTCTC 1 cut(s) 1157
Eco32I GATATC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 1419
Eco88I CYCGRG 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 709, 1760
EcoRV GATATC 1 cut(s) 996
EcoT14I CCWWGG 2 cut(s) 1255, 1480
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 919
EgeI GGCGCC 1 cut(s) 1766
EheI GGCGCC 1 cut(s) 1766
ErhI CCWWGG 2 cut(s) 1255, 1480
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 7 cut(s) 156, 351, 512, 1012, 1204, 1294, 1484
FatI CATG 7 cut(s) 152, 347, 508, 1008, 1200, 1290, 1480
Fnu4HI GCNGC 5 cut(s) 417, 524, 1194, 1740, 1794
FokI GGATG 7 cut(s) 324, 325, 439, 491, 578, 797, 864
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 5 cut(s) 417, 524, 1194, 1740, 1794
FspBI CTAG 1 cut(s) 704
GlaI GCGC 1 cut(s) 1766
GluI GCNGC 5 cut(s) 417, 524, 1194, 1740, 1794
HaeII RGCGCY 1 cut(s) 1768
HaeIII GGCC 2 cut(s) 113, 194
HapII CCGG 1 cut(s) 1167
HgaI GACGC 3 cut(s) 515, 836, 1785
HhaI GCGC 1 cut(s) 1767
Hin1I GRCGYC 2 cut(s) 526, 1765
Hin1II CATG 7 cut(s) 156, 351, 512, 1012, 1204, 1294, 1484
Hin6I GCGC 1 cut(s) 1765
HinP1I GCGC 1 cut(s) 1765
HincII GTYRAC 2 cut(s) 15, 1373
HindII GTYRAC 2 cut(s) 15, 1373
HinfI GANTC 3 cut(s) 739, 1049, 1499
HpaII CCGG 1 cut(s) 1167
HphI GGTGA 1 cut(s) 1496
Hpy166II GTNNAC 2 cut(s) 15, 1373
Hpy188I TCNGA 4 cut(s) 566, 642, 1223, 1585
Hpy188III TCNNGA 3 cut(s) 220, 1238, 1597
Hpy8I GTNNAC 2 cut(s) 15, 1373
Hpy99I CGWCG 3 cut(s) 670, 830, 1616
HpyAV CCTTC 4 cut(s) 598, 628, 1315, 1415
HpyCH4III ACNGT 4 cut(s) 79, 1017, 1232, 1817
HpyCH4IV ACGT 2 cut(s) 43, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 827, 1646, 1729
HpyF3I CTNAG 5 cut(s) 303, 357, 1143, 1220, 1306
HpySE526I ACGT 2 cut(s) 43, 968
Hsp92I GRCGYC 2 cut(s) 526, 1765
Hsp92II CATG 7 cut(s) 156, 351, 512, 1012, 1204, 1294, 1484
HspAI GCGC 1 cut(s) 1765
KasI GGCGCC 1 cut(s) 1764
KpnI GGTACC 1 cut(s) 628
LmnI GCTCC 4 cut(s) 614, 1324, 1449, 1720
Lsp1109I GCAGC 4 cut(s) 428, 1205, 1751, 1805
LweI GCATC 6 cut(s) 13, 390, 886, 1296, 1431, 1751
MaeI CTAG 1 cut(s) 704
MaeII ACGT 2 cut(s) 43, 968
MaeIII GTNAC 1 cut(s) 1468
MfeI CAATTG 3 cut(s) 33, 1094, 1715
MflI RGATCY 2 cut(s) 436, 1782
MhlI GDGCHC 1 cut(s) 919
Mly113I GGCGCC 1 cut(s) 1765
MlyI GAGTC 1 cut(s) 1058
MmeI TCCRAC 1 cut(s) 951
MnlI CCTC 8 cut(s) 56, 75, 320, 891, 1150, 1513, 1720, 1832
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 3 cut(s) 518, 1187, 1674
MslI CAYNNNNRTG 2 cut(s) 727, 1830
MspI CCGG 1 cut(s) 1167
MspR9I CCNGG 3 cut(s) 711, 1168, 1762
MunI CAATTG 3 cut(s) 33, 1094, 1715
Mva1269I GAATGC 2 cut(s) 436, 1562
MvaI CCWGG 2 cut(s) 711, 1762
MwoI GCNNNNNNNGC 3 cut(s) 827, 1646, 1729
NarI GGCGCC 1 cut(s) 1765
NciI CCSGG 1 cut(s) 1168
NcoI CCATGG 1 cut(s) 1480
NlaIII CATG 7 cut(s) 156, 351, 512, 1012, 1204, 1294, 1484
NlaIV GGNNCC 5 cut(s) 616, 626, 1326, 1766, 1784
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 1 cut(s) 156
NspV TTCGAA 1 cut(s) 51
PctI GAATGC 2 cut(s) 436, 1562
PfeI GAWTC 2 cut(s) 739, 1499
PflMI CCANNNNNTGG 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 709
PkrI GCNGC 5 cut(s) 418, 525, 1195, 1741, 1795
PleI GAGTC 1 cut(s) 1057
PluTI GGCGCC 1 cut(s) 1768
PpsI GAGTC 1 cut(s) 1057
Ppu21I YACGTR 1 cut(s) 44
PsiI TTATAA 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 709, 1760
PspGI CCWGG 2 cut(s) 709, 1760
PspN4I GGNNCC 5 cut(s) 616, 626, 1326, 1766, 1784
PspPI GGNCC 1 cut(s) 707
PstI CTGCAG 1 cut(s) 1468
PsuI RGATCY 2 cut(s) 436, 1782
RsaI GTAC 3 cut(s) 73, 626, 1806
RsaNI GTAC 3 cut(s) 72, 625, 1805
RseI CAYNNNNRTG 2 cut(s) 727, 1830
SaqAI TTAA 3 cut(s) 518, 1187, 1674
SatI GCNGC 5 cut(s) 417, 524, 1194, 1740, 1794
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 1 cut(s) 1058
ScrFI CCNGG 3 cut(s) 711, 1168, 1762
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 6 cut(s) 13, 390, 886, 1296, 1431, 1751
SfcI CTRYAG 3 cut(s) 322, 1464, 1842
SfoI GGCGCC 1 cut(s) 1766
SfuI TTCGAA 1 cut(s) 51
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 727, 1830
SmlI CTYRAG 1 cut(s) 1504
SmoI CTYRAG 1 cut(s) 1504
SnaBI TACGTA 1 cut(s) 44
SsiI CCGC 1 cut(s) 523
SspDI GGCGCC 1 cut(s) 1764
SspMI CTAG 1 cut(s) 704
StyD4I CCNGG 3 cut(s) 709, 1166, 1760
StyI CCWWGG 2 cut(s) 1255, 1480
TaaI ACNGT 4 cut(s) 79, 1017, 1232, 1817
TaiI ACGT 2 cut(s) 46, 971
TaqI TCGA 9 cut(s) 51, 61, 259, 665, 694, 825, 1052, 1113, 1598
TatI WGTACW 2 cut(s) 71, 1804
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 2 cut(s) 739, 1499
Tru1I TTAA 3 cut(s) 518, 1187, 1674
Tru9I TTAA 3 cut(s) 518, 1187, 1674
TseI GCWGC 4 cut(s) 416, 1193, 1739, 1793
TspGWI ACGGA 2 cut(s) 508, 1775
Van91I CCANNNNNTGG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 3 cut(s) 232, 1183, 1676
XceI RCATGY 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.