Rh1DG273100

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002732
Physical Location & Seq
Reverse (-)
49310312 .. 49314839
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG273100.1

Sequence Viewer

Length: 693 bp
ATGGGGCATTCATCAGCAGTCTGGGACTATAAGGCAGCAATTGAGAAAACAAAGGACTTGAATGGGGTCGGACAAGTTGTTCTTCGAAACCCACAAGGGGGTTCAGCGCAGGTTAGCTTGCATGGAGGACAGGTCACATCATGGAGGAATGAGCATGGAGAAGAACTCCTATTCACTAGTAGTAAGGCAATCTTCAAGCCTCCAAAAGCAATGCGAGGGGGAATTCCCATTTGTTTCCCACAGTTTGGGAATTGTGGATCTTTAGAACTACATGGTTTTGCAAGAAACAAGCTCTGGGCAATTGATGATAATCCTCCAGTGCTTCGCCCAAATGATTCCCAAGGAAAATCATTTGTTGATCTCCTTCTTAAACCATCTGAAGAGGACCTGAAGTTCTGGCCCCATAGTTTTGAGTTTCGCCTAAGGGTGTCTCTTGCAATGAATGGAGATCTGACCCTGATATCACGAGTCAGGAATGTGAATAGCAAGATGTTTAGTTTCTCTTTTGCCTACCACACTTACTTTTTGGTTTCTGACATAAGTGAGGTGAGGATCGAAGGGCTGGAGACATGTGACTACTTAGACAACCTTTGTCACAGAGAACGTTTCACAGAACAAGGAGATGCCTTAACTTTTGAATCAGAGGTGAGTTTTGTTTTGTTTACTTATATGAAATGGTTTTTAGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

230

Amino Acids

26.11

Weight (kDa)

6.17

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 25 - 215 1.4e-45 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 245
AclI AACGTT 1 cut(s) 604
AclWI GGATC 2 cut(s) 265, 560
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 2 cut(s) 399, 410
AfiI CCNNNNNNNGG 3 cut(s) 97, 98, 245
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 3 cut(s) 61, 196, 638
AhlI ACTAGT 1 cut(s) 176
AloI GAACNNNNNNTCC 4 cut(s) 63, 95, 377, 409
AluBI AGCT 2 cut(s) 117, 292
AluI AGCT 2 cut(s) 117, 292
Alw26I GTCTC 2 cut(s) 435, 560
AlwI GGATC 2 cut(s) 265, 560
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 222
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 2 cut(s) 385, 399
AsuHPI GGTGA 2 cut(s) 559, 658
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 385
AxyI CCTNAGG 1 cut(s) 422
BauI CACGAG 1 cut(s) 465
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 382
BcoDI GTCTC 2 cut(s) 435, 560
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 100
BglII AGATCT 1 cut(s) 448
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 385, 399
BmiI GGNNCC 1 cut(s) 401
BmsI GCATC 1 cut(s) 613
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 2 cut(s) 300, 584
Bpu14I TTCGAA 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 98, 245
Bse1I ACTGG 1 cut(s) 317
Bse21I CCTNAGG 1 cut(s) 422
Bse3DI GCAATG 2 cut(s) 216, 444
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 340
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 3 cut(s) 97, 98, 245
BseMI GCAATG 2 cut(s) 216, 444
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 400
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 97, 98, 245
BsmAI GTCTC 2 cut(s) 435, 560
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 85
Bsp143I GATC 4 cut(s) 257, 358, 448, 552
BspANI GGCC 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 401
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 265, 560
BspT104I TTCGAA 1 cut(s) 85
BsrDI GCAATG 2 cut(s) 216, 444
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 4 cut(s) 257, 358, 448, 552
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 340
Bst2BI CACGAG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 422, 580
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 4 cut(s) 260, 361, 451, 555
BstMAI GTCTC 2 cut(s) 435, 560
BstMBI GATC 4 cut(s) 257, 358, 448, 552
BstNSI RCATGY 1 cut(s) 573
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 2 cut(s) 257, 448
BstYI RGATCY 2 cut(s) 257, 448
Bsu36I CCTNAGG 1 cut(s) 422
BsuRI GGCC 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 385, 399
CviAII CATG 5 cut(s) 122, 141, 155, 272, 570
CviJI RGCY 5 cut(s) 117, 199, 292, 400, 562
CviKI_1 RGCY 5 cut(s) 117, 199, 292, 400, 562
DdeI CTNAG 2 cut(s) 422, 580
DpnI GATC 4 cut(s) 259, 360, 450, 554
DpnII GATC 4 cut(s) 257, 358, 448, 552
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 340
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 399, 410
Eco81I CCTNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 222
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 5 cut(s) 125, 144, 158, 275, 573
FalI AAGNNNNNCTT 4 cut(s) 66, 98, 176, 208
FaqI GGGAC 1 cut(s) 38
FatI CATG 5 cut(s) 121, 140, 154, 271, 569
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 2 cut(s) 300, 584
HaeIII GGCC 1 cut(s) 400
HhaI GCGC 1 cut(s) 109
Hin1II CATG 5 cut(s) 125, 144, 158, 275, 573
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 3 cut(s) 335, 468, 638
HphI GGTGA 2 cut(s) 559, 658
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 5 cut(s) 71, 379, 453, 535, 643
Hpy188III TCNNGA 2 cut(s) 465, 472
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 2 cut(s) 374, 551
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 3 cut(s) 121, 281, 437
HpyF3I CTNAG 2 cut(s) 422, 580
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 5 cut(s) 125, 144, 158, 275, 573
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 4 cut(s) 257, 358, 448, 552
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 613
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 3 cut(s) 133, 572, 593
MalI GATC 4 cut(s) 259, 360, 450, 554
MboI GATC 4 cut(s) 257, 358, 448, 552
MboII GAAGA 4 cut(s) 74, 173, 184, 392
MfeI CAATTG 2 cut(s) 39, 300
MflI RGATCY 2 cut(s) 257, 448
MluCI AATT 4 cut(s) 39, 222, 250, 300
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 9 cut(s) 119, 138, 209, 210, 324, 376, 538, 543, 637
MseI TTAA 2 cut(s) 369, 629
MunI CAATTG 2 cut(s) 39, 300
Mva1269I GAATGC 1 cut(s) 7
NdeII GATC 4 cut(s) 257, 358, 448, 552
NlaIII CATG 5 cut(s) 125, 144, 158, 275, 573
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 3 cut(s) 133, 572, 593
NspI RCATGY 1 cut(s) 573
NspV TTCGAA 1 cut(s) 85
PciI ACATGT 1 cut(s) 569
PctI GAATGC 1 cut(s) 7
PfeI GAWTC 2 cut(s) 335, 638
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
PpuMI RGGWCCY 1 cut(s) 385
PscI ACATGT 1 cut(s) 569
Psp1406I AACGTT 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 2 cut(s) 385, 399
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 2 cut(s) 257, 448
SaqAI TTAA 2 cut(s) 369, 629
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 4 cut(s) 257, 358, 448, 552
Sau96I GGNCC 2 cut(s) 385, 399
SchI GAGTC 1 cut(s) 477
SetI ASST 9 cut(s) 114, 119, 135, 294, 390, 549, 591, 607, 648
SfaNI GCATC 1 cut(s) 613
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 385
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 4 cut(s) 39, 222, 250, 300
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 607
TaqI TCGA 2 cut(s) 85, 555
TasI AATT 4 cut(s) 39, 222, 250, 300
TfiI GAWTC 2 cut(s) 335, 638
Tru1I TTAA 2 cut(s) 369, 629
Tru9I TTAA 2 cut(s) 369, 629
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 3 cut(s) 133, 572, 593
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 3 cut(s) 133, 572, 593
TspDTI ATGAA 2 cut(s) 455, 686
TspRI CASTG 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 222
XceI RCATGY 1 cut(s) 573
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.