Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002732

Physical Location & Seq

Genomic Coordinates Reverse (-)

37309864 .. 37311599

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAAGCAGTCACTTCTATTCTCCACAAAGTTACAGGATCCCAGTCTCCGATTCGATGGGACGAGCACGACTTGACCTTGATCGGTTCCGGCTCCTCTGGGCGTGTCTTCTTGGGCAAGGATCAGTCCGGATCGCCTATTGCTGTCAAAGAGGCTCACATCAGGGAGCTTGATGAAGTGAAGCTTCTACAAAAGTTGTCTCATAAGAACATTGTCAAATATTTGGGTGCAGAGACAAAGGAAGAAACCTCATATATTCTGTTGGAATATGTTCCTGGTGGATCTATTTCAGCACATTTGATGAAGGGACCTTTCGATGAGGATAAAATAAGAACGTACACGCAGCAGCTGTTGTTGGGACTACAATATTTACACCAAAAAGAAATCACGCATGGTGACATTAAGGGAGCGAATATCCTTATTGATGCTGATGGATGCATTAAACTTGCAGATTTTGGATTTTTGGTCTATCTAAACAGGGTGCACAACTCTGGATGGCTCCTGAAGTCCTTCTCCAGAAGGATCTGCATAATTGCAGGCATGCTATTTGATGATGATGATATATCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

190

Amino Acids

21.21

Weight (kDa)

6.44

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 160	4.9e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	27 - 158	3.9e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61610 AT3G61610
fragaria_vesca	FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830
malus_domestica	MD01G1074800.v1.1 MD07G1143900.v1.1
prunus_persica	Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1
pyrus_communis	pycom01g10390
rosa_chinensis	RchiOBHm_Chr1g0358641
rosa_laevigata	RLG00000027939
rosa_multiflora	Rmu_sc0001609.1_g000023
rosa_roxburghii	Rroxscaffold_4G00297740
rosa_rugosa	Rorug01G0263100 Rorug01G0263200 Rorug01G0263300 Rorug01G0263400 Rorug01G0263500 Rorug01G0263500 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263700
rosa_samantha	Rh1AG278300 Rh1CG261700 Rh1DG273100
rosa_wichuraiana	Rw1G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	128
AclWI	GGATC	6 cut(s)	33, 46, 129, 139, 289, 530
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	3 cut(s)	169, 184, 349
AluI	AGCT	3 cut(s)	169, 184, 349
Alw21I	GWGCWC	2 cut(s)	69, 486
Alw26I	GTCTC	3 cut(s)	51, 204, 227
Alw44I	GTGCAC	1 cut(s)	482
AlwI	GGATC	6 cut(s)	33, 46, 129, 139, 289, 530
AlwNI	CAGNNNCTG	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	128
ApaLI	GTGCAC	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	343, 346
Asp700I	GAANNNNTTC	2 cut(s)	270, 509
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	486
BamHI	GGATCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	69, 486
BbvI	GCAGC	2 cut(s)	355, 358
BccI	CCATC	3 cut(s)	51, 425, 489
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	51, 204, 227
BisI	GCNGC	2 cut(s)	344, 347
BlsI	GCNGC	2 cut(s)	345, 348
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	5 cut(s)	40, 88, 94, 309, 500
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	415, 425
BmuI	ACTGGG	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	440, 500
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	355, 358
BsgI	GTGCAG	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	69, 486
BsiSI	CCGG	2 cut(s)	90, 129
BslFI	GGGAC	3 cut(s)	74, 321, 372
BsmAI	GTCTC	3 cut(s)	51, 204, 227
BsmFI	GGGAC	3 cut(s)	74, 321, 372
Bsp1286I	GDGCHC	2 cut(s)	69, 486
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	6 cut(s)	38, 81, 121, 131, 281, 522
BspEI	TCCGGA	1 cut(s)	128
BspLI	GGNNCC	5 cut(s)	40, 88, 94, 309, 500
BspPI	GGATC	6 cut(s)	33, 46, 129, 139, 289, 530
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	6 cut(s)	38, 81, 121, 131, 281, 522
Bst2UI	CCWGG	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	538, 542
BstF5I	GGATG	2 cut(s)	440, 500
BstKTI	GATC	6 cut(s)	41, 84, 124, 134, 284, 525
BstMAI	GTCTC	3 cut(s)	51, 204, 227
BstMBI	GATC	6 cut(s)	38, 81, 121, 131, 281, 522
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	355, 358
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	3 cut(s)	38, 281, 522
BstYI	RGATCY	3 cut(s)	38, 281, 522
BtsCI	GGATG	2 cut(s)	440, 500
Cac8I	GCNNGC	2 cut(s)	538, 542
CaiI	CAGNNNCTG	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	392, 541
CviJI	RGCY	6 cut(s)	93, 155, 169, 184, 349, 499
CviKI_1	RGCY	6 cut(s)	93, 155, 169, 184, 349, 499
CviQI	GTAC	1 cut(s)	337
DpnI	GATC	6 cut(s)	40, 83, 123, 133, 283, 524
DpnII	GATC	6 cut(s)	38, 81, 121, 131, 281, 522
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	440
FaeI	CATG	2 cut(s)	395, 544
FaiI	YATR	8 cut(s)	204, 253, 255, 270, 393, 530, 542, 563
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	3 cut(s)	74, 321, 372
FatI	CATG	2 cut(s)	391, 540
Fnu4HI	GCNGC	2 cut(s)	344, 347
FokI	GGATG	2 cut(s)	447, 507
Fsp4HI	GCNGC	2 cut(s)	344, 347
GluI	GCNGC	2 cut(s)	344, 347
GsuI	CTGGAG	1 cut(s)	499
HapII	CCGG	2 cut(s)	90, 129
Hin1II	CATG	2 cut(s)	395, 544
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	90, 129
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	339, 484
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	4 cut(s)	129, 492, 502, 516
Hpy8I	GTNNAC	2 cut(s)	339, 484
HpyAV	CCTTC	3 cut(s)	298, 513, 520
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	6 cut(s)	230, 438, 449, 484, 528, 536
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	395, 544
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	6 cut(s)	38, 81, 121, 131, 281, 522
LmnI	GCTCC	4 cut(s)	98, 166, 407, 504
Lsp1109I	GCAGC	2 cut(s)	355, 358
LweI	GCATC	2 cut(s)	415, 425
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	3 cut(s)	10, 31, 395
MalI	GATC	6 cut(s)	40, 83, 123, 133, 283, 524
MboI	GATC	6 cut(s)	38, 81, 121, 131, 281, 522
MboII	GAAGA	2 cut(s)	100, 254
MflI	RGATCY	3 cut(s)	38, 281, 522
MhlI	GDGCHC	2 cut(s)	69, 486
MluCI	AATT	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	106, 145, 259, 313
Mph1103I	ATGCAT	1 cut(s)	440
MroI	TCCGGA	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	270, 509
MseI	TTAA	2 cut(s)	402, 441
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	2 cut(s)	90, 129
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
NdeII	GATC	6 cut(s)	38, 81, 121, 131, 281, 522
NlaIII	CATG	2 cut(s)	395, 544
NlaIV	GGNNCC	5 cut(s)	40, 88, 94, 309, 500
NmuCI	GTSAC	2 cut(s)	10, 395
NsiI	ATGCAT	1 cut(s)	440
NspI	RCATGY	1 cut(s)	544
PaeI	GCATGC	1 cut(s)	544
PdmI	GAANNNNTTC	2 cut(s)	270, 509
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	345, 348
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	5 cut(s)	40, 88, 94, 309, 500
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	3 cut(s)	38, 281, 522
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	402, 441
SatI	GCNGC	2 cut(s)	344, 347
Sau3AI	GATC	6 cut(s)	38, 81, 121, 131, 281, 522
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	69, 486
SetI	ASST	7 cut(s)	80, 171, 186, 251, 313, 338, 351
SfaNI	GCATC	2 cut(s)	415, 425
SinI	GGWCC	1 cut(s)	308
SphI	GCATGC	1 cut(s)	544
Sse9I	AATT	1 cut(s)	531
SspI	AATATT	2 cut(s)	221, 368
StyD4I	CCNGG	1 cut(s)	274
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	55, 315
TasI	AATT	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	402, 441
Tru9I	TTAA	2 cut(s)	402, 441
TseFI	GTSAC	2 cut(s)	10, 395
TseI	GCWGC	2 cut(s)	343, 346
Tsp45I	GTSAC	2 cut(s)	10, 395
TspDTI	ATGAA	3 cut(s)	17, 189, 317
VneI	GTGCAC	1 cut(s)	482
VpaK11BI	GGWCC	1 cut(s)	308
XceI	RCATGY	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	270, 509
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.