RLG00000027939

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002732
Physical Location & Seq
Forward (+)
17018524 .. 17022674
4151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027939

Sequence Viewer

Length: 924 bp
ATGAACGGTCTCAACTCTCGAAATTCCTCCATGTCCTACTTCTCGTATCTCGACGTCCTAGATCTCTGCAAGCCCCCCCATCATATAACACAAGTTAGCTTGCATGGAGGACAGGTCACATCATGGAGGAATGAGCATGGAGAAGAACTCCTATTCACTAGTAGTAAGGCAATCTTCAAGCCTCCAAAAGCAATGCGAGGAGGAATTCCCATTTGTTTCCCACAGTTTGGGAATTGTGGATCTTTAGAACTACATGGTTTTGCAAGAAACAAGCTCTGGGCAATTGATGATAATCCTCCAGTGCTTCGCCCAAATGATTCCCAAGGAAAATCATTTGTTGATCTACTTCTTAAACCATCTGAAGAGGACCTGAAGTTCTGGCCCCATAGTTTTGAGTTTCGCCTAAGGGTGTCTCTTGCAATGAATGGAGATCTGACCCTGATATCACGAGTCAGGAATGTGAATGGCAAGATGTTTAGTTTCTCTTTTGCCTACCACACTTACTTTTTGGTTTCTGACATAAGTGAGGTGAGGATCGAAGGGCTGGAGACATGTGACTACTTAGACAACCTTTGTCACAGAGAACGTTTCACAGAACAAGGAGATGCCTTAACTTTTGAATCGGAGGTTGATCGACTTTATCTAAGTTCACGCAAAGTAATTGCAGTTCTTGATCATGAAAAAAAACAGACATATGTAATCAGAAAGGAAGGACTACCAGATGTTGTTGTTTGGAATCCGTGGGAGAAGAAATCAAAATCCATGGTTGATTTTGGTGACGAGGAATATAAACAGATGCTTTGTGTGGATGCTGCGGCAATTGAGAAACCCATCACCCTGAAGCCAGGAGAGGAATGGACAGGGAGGTTGCAGCTCTCTGTTGTGCCTTCGAGTTTCTGTAGTGAGAACCTGGATCTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

308

Amino Acids

35.09

Weight (kDa)

5.66

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 31 - 292 2.1e-66 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 227
AciI CCGC 1 cut(s) 815
AclI AACGTT 1 cut(s) 586
AclWI GGATC 3 cut(s) 247, 542, 921
AcsI RAATTY 2 cut(s) 22, 204
AcuI CTGAAG 3 cut(s) 381, 392, 860
AcyI GRCGYC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 551
AgsI TTSAA 2 cut(s) 178, 620
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 2 cut(s) 844, 909
AloI GAACNNNNNNTCC 2 cut(s) 359, 391
AluBI AGCT 3 cut(s) 99, 274, 874
AluI AGCT 3 cut(s) 99, 274, 874
Alw26I GTCTC 3 cut(s) 14, 417, 542
AlwI GGATC 3 cut(s) 247, 542, 921
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 812, 871
ApoI RAATTY 2 cut(s) 22, 204
AspS9I GGNCC 2 cut(s) 367, 381
AsuHPI GGTGA 3 cut(s) 541, 788, 826
AvaII GGWCC 1 cut(s) 367
AxyI CCTNAGG 1 cut(s) 404
BauI CACGAG 1 cut(s) 447
BbvI GCAGC 2 cut(s) 799, 883
BccI CCATC 3 cut(s) 87, 364, 839
BciT130I CCWGG 2 cut(s) 846, 911
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 3 cut(s) 14, 417, 542
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 2 cut(s) 59, 159
BfmI CTRYAG 1 cut(s) 898
BglII AGATCT 2 cut(s) 61, 430
BisI GCNGC 3 cut(s) 813, 816, 872
BlsI GCNGC 3 cut(s) 814, 817, 873
Bme1390I CCNGG 2 cut(s) 846, 911
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 367, 381
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 846, 911
BmsI GCATC 3 cut(s) 595, 786, 799
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 2 cut(s) 282, 566
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 322, 740, 762
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 404
Bse3DI GCAATG 2 cut(s) 198, 426
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 2 cut(s) 846, 911
BseDI CCNNGG 3 cut(s) 322, 740, 762
BseGI GGATG 1 cut(s) 814
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 2 cut(s) 198, 426
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 799, 883
BshFI GGCC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 3 cut(s) 14, 417, 542
BsnI GGCC 1 cut(s) 382
Bso31I GGTCTC 1 cut(s) 14
Bsp143I GATC 8 cut(s) 61, 239, 340, 430, 534, 631, 673, 913
Bsp19I CCATGG 1 cut(s) 762
BspACI CCGC 1 cut(s) 815
BspANI GGCC 1 cut(s) 382
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 383
BspPI GGATC 3 cut(s) 247, 542, 921
BspTNI GGTCTC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 198, 426
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 322, 740, 762
BssMI GATC 8 cut(s) 61, 239, 340, 430, 534, 631, 673, 913
BssNI GRCGYC 1 cut(s) 54
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 322, 762
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 846, 911
Bst4CI ACNGT 2 cut(s) 8, 225
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 71, 101
BstDEI CTNAG 3 cut(s) 404, 562, 644
BstDSI CCRYGG 2 cut(s) 740, 762
BstF5I GGATG 1 cut(s) 814
BstKTI GATC 8 cut(s) 64, 242, 343, 433, 537, 634, 676, 916
BstMAI GTCTC 3 cut(s) 14, 417, 542
BstMBI GATC 8 cut(s) 61, 239, 340, 430, 534, 631, 673, 913
BstNI CCWGG 2 cut(s) 846, 911
BstNSI RCATGY 1 cut(s) 555
BstSCI CCNGG 2 cut(s) 844, 909
BstSFI CTRYAG 1 cut(s) 898
BstV1I GCAGC 2 cut(s) 799, 883
BstX2I RGATCY 4 cut(s) 61, 239, 430, 913
BstYI RGATCY 4 cut(s) 61, 239, 430, 913
Bsu36I CCTNAGG 1 cut(s) 404
BsuRI GGCC 1 cut(s) 382
BtgI CCRYGG 2 cut(s) 740, 762
BtsCI GGATG 1 cut(s) 814
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 71, 101
CciI TCATGA 1 cut(s) 676
Cfr13I GGNCC 2 cut(s) 367, 381
CviAII CATG 8 cut(s) 31, 104, 123, 137, 254, 552, 677, 763
CviJI RGCY 8 cut(s) 73, 99, 181, 274, 382, 544, 844, 874
CviKI_1 RGCY 8 cut(s) 73, 99, 181, 274, 382, 544, 844, 874
DdeI CTNAG 3 cut(s) 404, 562, 644
DpnI GATC 8 cut(s) 63, 241, 342, 432, 536, 633, 675, 915
DpnII GATC 8 cut(s) 61, 239, 340, 430, 534, 631, 673, 913
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 322, 762
Eco31I GGTCTC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 367
Eco57I CTGAAG 3 cut(s) 381, 392, 860
Eco81I CCTNAGG 1 cut(s) 404
EcoO109I RGGNCCY 1 cut(s) 367
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 844, 909
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 322, 762
ErhI CCWWGG 2 cut(s) 322, 762
FaeI CATG 8 cut(s) 34, 107, 126, 140, 257, 555, 680, 766
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 8 cut(s) 30, 103, 122, 136, 253, 551, 676, 762
FauNDI CATATG 1 cut(s) 694
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 3 cut(s) 813, 816, 872
FokI GGATG 1 cut(s) 821
Fsp4HI GCNGC 3 cut(s) 813, 816, 872
FspBI CTAG 2 cut(s) 59, 159
GluI GCNGC 3 cut(s) 813, 816, 872
GsuI CTGGAG 2 cut(s) 282, 566
HaeIII GGCC 1 cut(s) 382
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 8 cut(s) 34, 107, 126, 140, 257, 555, 680, 766
HinfI GANTC 4 cut(s) 317, 450, 620, 736
HphI GGTGA 3 cut(s) 541, 788, 826
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 5 cut(s) 361, 435, 517, 625, 704
Hpy188III TCNNGA 7 cut(s) 18, 50, 447, 454, 671, 677, 917
Hpy8I GTNNAC 1 cut(s) 650
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 533, 704, 897
HpyCH4III ACNGT 2 cut(s) 8, 225
HpyCH4IV ACGT 2 cut(s) 54, 586
HpyCH4V TGCA 6 cut(s) 69, 103, 263, 419, 665, 871
HpyF3I CTNAG 3 cut(s) 404, 562, 644
HpySE526I ACGT 2 cut(s) 54, 586
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 8 cut(s) 34, 107, 126, 140, 257, 555, 680, 766
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 8 cut(s) 61, 239, 340, 430, 534, 631, 673, 913
Lsp1109I GCAGC 2 cut(s) 799, 883
LweI GCATC 3 cut(s) 595, 786, 799
MaeI CTAG 2 cut(s) 59, 159
MaeII ACGT 2 cut(s) 54, 586
MaeIII GTNAC 4 cut(s) 115, 554, 575, 776
MalI GATC 8 cut(s) 63, 241, 342, 432, 536, 633, 675, 915
MboI GATC 8 cut(s) 61, 239, 340, 430, 534, 631, 673, 913
MboII GAAGA 4 cut(s) 155, 166, 374, 760
MfeI CAATTG 2 cut(s) 282, 819
MflI RGATCY 4 cut(s) 61, 239, 430, 913
MluCI AATT 6 cut(s) 22, 204, 232, 282, 660, 819
MlyI GAGTC 1 cut(s) 459
MseI TTAA 2 cut(s) 351, 611
MspR9I CCNGG 2 cut(s) 846, 911
MunI CAATTG 2 cut(s) 282, 819
MvaI CCWGG 2 cut(s) 846, 911
NcoI CCATGG 1 cut(s) 762
NdeI CATATG 1 cut(s) 694
NdeII GATC 8 cut(s) 61, 239, 340, 430, 534, 631, 673, 913
NlaIII CATG 8 cut(s) 34, 107, 126, 140, 257, 555, 680, 766
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 4 cut(s) 115, 554, 575, 776
NspI RCATGY 1 cut(s) 555
PagI TCATGA 1 cut(s) 676
PciI ACATGT 1 cut(s) 551
PfeI GAWTC 3 cut(s) 317, 620, 736
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 3 cut(s) 814, 817, 873
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PpuMI RGGWCCY 1 cut(s) 367
PscI ACATGT 1 cut(s) 551
Psp1406I AACGTT 1 cut(s) 586
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 844, 909
PspGI CCWGG 2 cut(s) 844, 909
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 2 cut(s) 367, 381
PspPPI RGGWCCY 1 cut(s) 367
PsrI GAACNNNNNNTAC 2 cut(s) 651, 683
PsuI RGATCY 4 cut(s) 61, 239, 430, 913
SaqAI TTAA 2 cut(s) 351, 611
SatI GCNGC 3 cut(s) 813, 816, 872
Sau3AI GATC 8 cut(s) 61, 239, 340, 430, 534, 631, 673, 913
Sau96I GGNCC 2 cut(s) 367, 381
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 2 cut(s) 846, 911
SfaNI GCATC 3 cut(s) 595, 786, 799
SfcI CTRYAG 1 cut(s) 898
SinI GGWCC 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 6 cut(s) 22, 204, 232, 282, 660, 819
SsiI CCGC 1 cut(s) 815
SspMI CTAG 2 cut(s) 59, 159
StyD4I CCNGG 2 cut(s) 844, 909
StyI CCWWGG 2 cut(s) 322, 762
TaaI ACNGT 2 cut(s) 8, 225
TaiI ACGT 2 cut(s) 57, 589
TaqI TCGA 5 cut(s) 19, 51, 537, 634, 890
TasI AATT 6 cut(s) 22, 204, 232, 282, 660, 819
TauI GCSGC 1 cut(s) 818
TfiI GAWTC 3 cut(s) 317, 620, 736
Tru1I TTAA 2 cut(s) 351, 611
Tru9I TTAA 2 cut(s) 351, 611
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 4 cut(s) 115, 554, 575, 776
TseI GCWGC 2 cut(s) 812, 871
Tsp45I GTSAC 4 cut(s) 115, 554, 575, 776
TspDTI ATGAA 3 cut(s) 17, 437, 693
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 1 cut(s) 306
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 2 cut(s) 22, 204
XceI RCATGY 1 cut(s) 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 852
XspI CTAG 2 cut(s) 59, 159
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.