Rorug01G0263100

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002732
Physical Location & Seq
Reverse (-)
37290646 .. 37290885
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0263100.1

Sequence Viewer

Length: 240 bp
ATGGAAAAGTACACTGTCAAGTCTGCATATTGGATTGCTCGACAGCAGGTTATGGGAGAGTTCTTAACTTCTACCTCATCTAGAAATCCATTCGAGGTTCTATGGAAGAAAATTTGGAACACAAAGGTTCCTGGCAAAGTGAAAATATGTCTCTGGAGGGCTGCAAACAACATATTGCCTACTCAAGAAAGCTTGAGTCACAAGGGATATACTAGGCCCTTAAAACTGTTTGCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

79

Amino Acids

9.25

Weight (kDa)

10.15

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 4 - 71 5.8e-08 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 1 cut(s) 11
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 2 cut(s) 81, 213
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 175
BpuEI CTTGAG 2 cut(s) 168, 214
BseBI CCWGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 217
BspANI GGCC 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 129
BspMI ACCTGC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 16, 228
BstMAI GTCTC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 10
CviJI RGCY 3 cut(s) 161, 192, 217
CviKI_1 RGCY 3 cut(s) 161, 192, 217
CviQI GTAC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 130
FaiI YATR 7 cut(s) 28, 53, 103, 148, 173, 210, 236
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 81, 213
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 81, 154, 185
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4III ACNGT 2 cut(s) 16, 228
HpyCH4V TGCA 2 cut(s) 26, 164
LpnPI CCDG 4 cut(s) 32, 117, 139, 144
Lsp1109I GCAGC 1 cut(s) 148
MaeI CTAG 2 cut(s) 81, 213
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 1 cut(s) 118
MluCI AATT 1 cut(s) 111
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 3 cut(s) 85, 88, 150
MseI TTAA 2 cut(s) 65, 221
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 65, 221
SatI GCNGC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 132
SetI ASST 5 cut(s) 51, 77, 99, 129, 194
SmlI CTYRAG 2 cut(s) 183, 193
SmoI CTYRAG 2 cut(s) 183, 193
Sse9I AATT 1 cut(s) 111
SspMI CTAG 2 cut(s) 81, 213
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 16, 228
TaqI TCGA 2 cut(s) 40, 93
TasI AATT 1 cut(s) 111
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 2 cut(s) 65, 221
Tru9I TTAA 2 cut(s) 65, 221
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 197
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 80
XspI CTAG 2 cut(s) 81, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.