Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002732

Physical Location & Seq

Genomic Coordinates Reverse (-)

37305801 .. 37307022

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0263300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCACTGGAGATCCTTGGAGGGGAAATTACCACGCTGGGGCCTCTTTTCTCAAACATATGGAGAAATCAGATTCTGTTCCTCCAATCCCCGACAATCTTTCTTCTTATGGGAAACAATTTTTGAGACGATGTCTGCAAAGGGAACCAAATTTGAGGGCATCTGCATCCCAGTTGCTTGAGGATCCATTCATAACCAGGAAAAACTTCAGGCACCCATCTGGAGCTGGTACAGTTGTTGGAGCTGTTGCTGCCCCCGTCATCCACCAGCAACACGTAGTTACCCCAGCTGCTCCCAAGCAACGCATTGTTACCCCAGCTGCTCCCAAGCAACGGCTTGTTATCCCTGCTGCTCCCAAGCACCGGCTTGTTATTCCCGCTGCTCCCAAGCAACGGCTTGTTATCCCTGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACTCGTTGTTATCCCCTCTGCTCCCAAGCAACTCGTTGTTATCCCCTCTGCTCCCAAGCAACGCATTGTTACCCCGCTGCTCCCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACTCGTTGTTATCCCCTCTGCTCCCAAGCAACGCATTGTTACCCCGCTGCTCCCTCCCAAGCAACACATGGTTACCCCTGCTGCTCCCAAGCAGCGCATTGTTACCCCATCCACACAACGCGTTGTTCACTCAGTTGCTTCACGTCCTGCTGCTAGTCAACTACCCGACCTCCAGTCCACTCCAGTTCTCATTCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

258

Amino Acids

27.9

Weight (kDa)

11.74

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61610 AT3G61610
fragaria_vesca	FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830
malus_domestica	MD01G1074800.v1.1 MD07G1143900.v1.1
prunus_persica	Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1
pyrus_communis	pycom01g10390
rosa_chinensis	RchiOBHm_Chr1g0358641
rosa_laevigata	RLG00000027939
rosa_multiflora	Rmu_sc0001609.1_g000023
rosa_roxburghii	Rroxscaffold_4G00297740
rosa_rugosa	Rorug01G0263100 Rorug01G0263200 Rorug01G0263300 Rorug01G0263400 Rorug01G0263500 Rorug01G0263500 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263700
rosa_samantha	Rh1AG278300 Rh1CG261700 Rh1DG273100
rosa_wichuraiana	Rw1G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	213
AccII	CGCG	1 cut(s)	696
AciI	CCGC	5 cut(s)	378, 438, 527, 561, 620
AclWI	GGATC	3 cut(s)	8, 179, 192
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	7 cut(s)	23, 40, 333, 363, 393, 423, 546
AflIII	ACRYGT	2 cut(s)	274, 694
AhdI	GACNNNNNGTC	1 cut(s)	748
AjiI	CACGTC	1 cut(s)	719
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	4 cut(s)	227, 245, 290, 320
AluI	AGCT	4 cut(s)	227, 245, 290, 320
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	3 cut(s)	8, 179, 192
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	3, 42
ApoI	RAATTY	1 cut(s)	151
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	1 cut(s)	42
BaeI	ACNNNNGTAYC	2 cut(s)	222, 255
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	213
BccI	CCATC	2 cut(s)	226, 691
BceAI	ACGGC	4 cut(s)	350, 410, 440, 563
BciT130I	CCWGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	729
Bme1390I	CCNGG	1 cut(s)	199
BmeRI	GACNNNNNGTC	1 cut(s)	748
BmgBI	CACGTC	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	4 cut(s)	43, 147, 186, 215
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	170, 176
BmuI	ACTGGG	1 cut(s)	166
BpmI	CTGGAG	4 cut(s)	30, 243, 731, 741
BpuEI	CTTGAG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 40, 333, 363, 393, 423, 546
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	4 cut(s)	13, 172, 748, 758
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	3 cut(s)	167, 261, 683
BseLI	CCNNNNNNNGG	7 cut(s)	23, 40, 333, 363, 393, 423, 546
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	4 cut(s)	13, 172, 748, 758
BseYI	CCCAGC	3 cut(s)	38, 286, 316
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	5, 44
BshNI	GGYRCC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	7 cut(s)	23, 40, 333, 363, 393, 423, 546
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	5, 44
Bsp143I	GATC	2 cut(s)	13, 184
BspACI	CCGC	5 cut(s)	378, 438, 527, 561, 620
BspANI	GGCC	2 cut(s)	5, 44
BspCNI	CTCAG	1 cut(s)	719
BspFNI	CGCG	1 cut(s)	696
BspLI	GGNNCC	4 cut(s)	43, 147, 186, 215
BspPI	GGATC	3 cut(s)	8, 179, 192
BspT107I	GGYRCC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	4 cut(s)	13, 172, 748, 758
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	2 cut(s)	13, 184
BssT1I	CCWWGG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	235
BstBAI	YACGTR	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	706
BstEII	GGTNACC	1 cut(s)	646
BstF5I	GGATG	3 cut(s)	167, 261, 683
BstFNI	CGCG	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	2 cut(s)	16, 187
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	13, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	1 cut(s)	197
BstUI	CGCG	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	13, 184
BstYI	RGATCY	2 cut(s)	13, 184
BsuRI	GGCC	2 cut(s)	5, 44
BtrI	CACGTC	1 cut(s)	719
BtsCI	GGATG	3 cut(s)	167, 261, 683
BtsIMutI	CAGTG	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	672
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	643
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	706
DpnI	GATC	2 cut(s)	15, 186
DpnII	GATC	2 cut(s)	13, 184
DriI	GACNNNNNGTC	1 cut(s)	748
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	42
EcoO65I	GGTNACC	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	1 cut(s)	646
FaiI	YATR	5 cut(s)	60, 62, 111, 194, 644
FatI	CATG	1 cut(s)	642
FauI	CCCGC	5 cut(s)	385, 445, 534, 568, 627
FauNDI	CATATG	1 cut(s)	60
FokI	GGATG	3 cut(s)	154, 248, 670
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	1 cut(s)	671
GsaI	CCCAGC	3 cut(s)	42, 290, 320
GsuI	CTGGAG	4 cut(s)	30, 243, 731, 741
HaeIII	GGCC	2 cut(s)	5, 44
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	1 cut(s)	646
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	364
Hpy166II	GTNNAC	3 cut(s)	703, 734, 753
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	3 cut(s)	703, 734, 753
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	276, 718
HpyCH4V	TGCA	2 cut(s)	139, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	706
HpySE526I	ACGT	2 cut(s)	276, 718
Hsp92II	CATG	1 cut(s)	646
HspAI	GCGC	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	13, 184
LweI	GCATC	2 cut(s)	170, 176
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	2 cut(s)	276, 718
MaeIII	GTNAC	6 cut(s)	280, 310, 520, 613, 646, 676
MalI	GATC	2 cut(s)	15, 186
MboI	GATC	2 cut(s)	13, 184
MboII	GAAGA	1 cut(s)	96
MflI	RGATCY	2 cut(s)	13, 184
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	28, 119, 151
MluI	ACGCGT	1 cut(s)	694
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	220
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	7 cut(s)	290, 320, 380, 440, 529, 563, 622
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	2 cut(s)	13, 184
NlaIII	CATG	1 cut(s)	646
NlaIV	GGNNCC	4 cut(s)	43, 147, 186, 215
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	646
PspFI	CCCAGC	3 cut(s)	38, 286, 316
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	4 cut(s)	43, 147, 186, 215
PspPI	GGNCC	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	13, 184
PsyI	GACNNNGTC	1 cut(s)	132
PvuII	CAGCTG	2 cut(s)	290, 320
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	13, 184
Sau96I	GGNCC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	7 cut(s)	229, 247, 279, 292, 322, 721, 747
SfaNI	GCATC	2 cut(s)	170, 176
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	28, 119, 151
SsiI	CCGC	5 cut(s)	378, 438, 527, 561, 620
SspMI	CTAG	1 cut(s)	729
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	279, 721
TasI	AATT	3 cut(s)	28, 119, 151
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.