Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002732

Physical Location & Seq

Genomic Coordinates Forward (+)

11196090 .. 11198586

Gene Structure 2497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10390.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCTTGTTTTTCACAAAATGGAGCATTCAGCAGGAGAATGGCAACATAGGGCAGCAATTGAGATTACAAAAGATTGGAATGGGGTAGAACAAGTGGTGCTTCAGAACCAGCAAGGGGCTTCGGCACGGGTTAGCTTACTTGGAGGACAGGTCACTTCATGGAGGAATAAGCATGGCGAAGAACTCCTATTCACTAGCAGCAAGGCAATCTTCCAGCCCCCAAAAGCGATGCGAGGAGGAATTCCCATTTGTTTCCCACAGTTTGGGAACTGTGGATCGCTGGAAAAGCATGGTTTTGCAAGGAACAAGGTGTGGGCAATTGATGATAATCCTGAAATGCGTCAACCAAATGATTCCAATGGAAAATCCTTTATTGATCTACTACTAAAACCGTCTGAAGACGACCTGAAGTGTTGGCCCCATAGTTTTGAGTTTCGACTTAGGGTGTCTCTTGCAACAAATGGAGATCTGAACCTGACATCAAGAGTTAGAAATGTCAATGGAAAGCCGTTTAGTTTCTCCTTTGCCTACCACACTTATTTTTCGGTTTCTGATATAAGTTCTGTCCCTAGTGAGGTGAGGATAGAAGGGCTGGAGACACTTGACTACTTAGACAACCTTTGTGAAAGACAACGTTTTACAGAACAAGGAGATGCCATAACTTTTGAGTCTGAGGTCAGTCGACTTTATCTAAGTTCGCCCAATGTGGTTGCAGTCCTTGATCATGAGAAAAAGCGAACATATGTAATCCGAAAGGAAGGACTACCAGATGTTGTTGTTTGGAATCCGTGGGAGAAGAAATCGAAATCTATGGTTGATTTTGGTGACGAGGAGTACAAGCAGATGCTTTGTGTGGATGGGGCAGCGATAGAGAAACCTATCACTTTGAAGCCAGGCAAGGAATGGACAGGGCGACTGCAGCTCTCAGTTGTGCCTTCGAGTTTCTGCAGCGAGCACCTTGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

323

Amino Acids

36.53

Weight (kDa)

6.03

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61610 AT3G61610
fragaria_vesca	FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830 FvH4_7g15830
malus_domestica	MD01G1074800.v1.1 MD07G1143900.v1.1
prunus_persica	Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1 Prupe.2G182900_v2.0.a1
pyrus_communis	pycom01g10390
rosa_chinensis	RchiOBHm_Chr1g0358641
rosa_laevigata	RLG00000027939
rosa_multiflora	Rmu_sc0001609.1_g000023
rosa_roxburghii	Rroxscaffold_4G00297740
rosa_rugosa	Rorug01G0263100 Rorug01G0263200 Rorug01G0263300 Rorug01G0263400 Rorug01G0263500 Rorug01G0263500 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263600 Rorug01G0263700
rosa_samantha	Rh1AG278300 Rh1CG261700 Rh1DG273100
rosa_wichuraiana	Rw1G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	682
AclI	AACGTT	1 cut(s)	634
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	3 cut(s)	86, 417, 428
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	3 cut(s)	115, 263, 574
AgsI	TTSAA	1 cut(s)	889
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	2 cut(s)	135, 922
AluI	AGCT	2 cut(s)	135, 922
Alw21I	GWGCWC	1 cut(s)	957
Alw26I	GTCTC	2 cut(s)	453, 590
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	5 cut(s)	53, 198, 863, 919, 948
ApoI	RAATTY	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	589, 836
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	957
BbvI	GCAGC	5 cut(s)	65, 210, 875, 931, 960
BccI	CCATC	1 cut(s)	851
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	894
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	453, 590
BfaI	CTAG	2 cut(s)	195, 570
BfmI	CTRYAG	2 cut(s)	917, 946
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	5 cut(s)	54, 199, 864, 920, 949
BlsI	GCNGC	5 cut(s)	55, 200, 865, 921, 950
Bme1390I	CCNGG	1 cut(s)	894
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	894
BmsI	GCATC	3 cut(s)	219, 643, 834
BpiI	GAAGAC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	614
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	788
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 263, 574
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	1 cut(s)	788
BseGI	GGATG	1 cut(s)	862
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	3 cut(s)	115, 263, 574
BseMII	CTCAG	2 cut(s)	663, 939
BseRI	GAGGAG	2 cut(s)	249, 845
BseXI	GCAGC	5 cut(s)	65, 210, 875, 931, 960
BshFI	GGCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	957
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	3 cut(s)	115, 263, 574
BsmAI	GTCTC	2 cut(s)	453, 590
BsmFI	GGGAC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	957
Bsp143I	GATC	5 cut(s)	275, 376, 466, 721, 961
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	2 cut(s)	664, 938
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	419
BspMAI	CTGCAG	2 cut(s)	921, 950
BspPI	GGATC	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	788
BssMI	GATC	5 cut(s)	275, 376, 466, 721, 961
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	3 cut(s)	261, 272, 393
BstC8I	GCNNGC	1 cut(s)	953
BstDEI	CTNAG	5 cut(s)	440, 610, 672, 692, 925
BstDSI	CCRYGG	1 cut(s)	788
BstF5I	GGATG	1 cut(s)	862
BstKTI	GATC	5 cut(s)	278, 379, 469, 724, 964
BstMAI	GTCTC	2 cut(s)	453, 590
BstMBI	GATC	5 cut(s)	275, 376, 466, 721, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 919
BstNI	CCWGG	1 cut(s)	894
BstSCI	CCNGG	1 cut(s)	892
BstSFI	CTRYAG	2 cut(s)	917, 946
BstV1I	GCAGC	5 cut(s)	65, 210, 875, 931, 960
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	788
BtgZI	GCGATG	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	862
Cac8I	GCNNGC	1 cut(s)	953
CciI	TCATGA	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	835
CviAII	CATG	4 cut(s)	159, 173, 290, 725
CviJI	RGCY	8 cut(s)	119, 135, 217, 418, 508, 592, 892, 922
CviKI_1	RGCY	8 cut(s)	119, 135, 217, 418, 508, 592, 892, 922
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	5 cut(s)	440, 610, 672, 692, 925
DpnI	GATC	5 cut(s)	277, 378, 468, 723, 963
DpnII	GATC	5 cut(s)	275, 376, 466, 721, 961
Eco57I	CTGAAG	3 cut(s)	86, 417, 428
EcoRI	GAATTC	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	892
FaeI	CATG	4 cut(s)	162, 176, 293, 728
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 194, 226
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	4 cut(s)	158, 172, 289, 724
FauNDI	CATATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	5 cut(s)	54, 199, 864, 920, 949
FokI	GGATG	1 cut(s)	869
Fsp4HI	GCNGC	5 cut(s)	54, 199, 864, 920, 949
FspBI	CTAG	2 cut(s)	195, 570
GluI	GCNGC	5 cut(s)	54, 199, 864, 920, 949
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	1 cut(s)	418
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	4 cut(s)	162, 176, 293, 728
HincII	GTYRAC	2 cut(s)	344, 683
HindII	GTYRAC	2 cut(s)	344, 683
HinfI	GANTC	3 cut(s)	353, 668, 784
HphI	GGTGA	2 cut(s)	589, 836
Hpy166II	GTNNAC	2 cut(s)	344, 683
Hpy188I	TCNGA	6 cut(s)	105, 397, 471, 553, 673, 752
Hpy188III	TCNNGA	3 cut(s)	332, 483, 725
Hpy8I	GTNNAC	2 cut(s)	344, 683
HpyAV	CCTTC	3 cut(s)	581, 752, 945
HpyCH4III	ACNGT	3 cut(s)	261, 272, 393
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	5 cut(s)	299, 455, 713, 919, 948
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 919
HpyF3I	CTNAG	5 cut(s)	440, 610, 672, 692, 925
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	4 cut(s)	162, 176, 293, 728
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	5 cut(s)	275, 376, 466, 721, 961
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	5 cut(s)	65, 210, 875, 931, 960
LweI	GCATC	3 cut(s)	219, 643, 834
MaeI	CTAG	2 cut(s)	195, 570
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	2 cut(s)	151, 824
MalI	GATC	5 cut(s)	277, 378, 468, 723, 963
MboI	GATC	5 cut(s)	275, 376, 466, 721, 961
MboII	GAAGA	4 cut(s)	191, 202, 410, 808
MfeI	CAATTG	2 cut(s)	57, 318
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	957
MluCI	AATT	3 cut(s)	57, 240, 318
MlyI	GAGTC	1 cut(s)	677
MnlI	CCTC	8 cut(s)	137, 156, 227, 230, 568, 573, 667, 823
MspR9I	CCNGG	1 cut(s)	894
MunI	CAATTG	2 cut(s)	57, 318
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	894
MwoI	GCNNNNNNNGC	2 cut(s)	286, 919
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	5 cut(s)	275, 376, 466, 721, 961
NlaIII	CATG	4 cut(s)	162, 176, 293, 728
NlaIV	GGNNCC	1 cut(s)	419
NmuCI	GTSAC	2 cut(s)	151, 824
PagI	TCATGA	1 cut(s)	724
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	353, 784
PflMI	CCANNNNNTGG	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	55, 200, 865, 921, 950
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp1406I	AACGTT	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	2 cut(s)	921, 950
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
SalI	GTCGAC	1 cut(s)	681
SatI	GCNGC	5 cut(s)	54, 199, 864, 920, 949
Sau3AI	GATC	5 cut(s)	275, 376, 466, 721, 961
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	1 cut(s)	894
SduI	GDGCHC	1 cut(s)	957
SfaNI	GCATC	3 cut(s)	219, 643, 834
SfcI	CTRYAG	2 cut(s)	917, 946
Sse9I	AATT	3 cut(s)	57, 240, 318
SspMI	CTAG	2 cut(s)	195, 570
StyD4I	CCNGG	1 cut(s)	892
TaaI	ACNGT	3 cut(s)	261, 272, 393
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	4 cut(s)	436, 682, 803, 938
TasI	AATT	3 cut(s)	57, 240, 318
TatI	WGTACW	1 cut(s)	834
TfiI	GAWTC	2 cut(s)	353, 784
TseFI	GTSAC	2 cut(s)	151, 824
TseI	GCWGC	5 cut(s)	53, 198, 863, 919, 948
Tsp45I	GTSAC	2 cut(s)	151, 824
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	777
Van91I	CCANNNNNTGG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	900
XmiI	GTMKAC	1 cut(s)	682
XspI	CTAG	2 cut(s)	195, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.