Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

23342550 .. 23344801

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGGCTTCTTTCTCTTCCACTGCTCCCACGACACCGGTTCTTCGATTCAGAGCCAACTACTCCAAGCCTCTCCTCTCTCTCCCAGATTCGTGTTTGAGGATAATCTCTTCGGCGATATCTCCCTCTACACGCTTAATTGCGTGTTCGTTCAAGACAGACAAGCTTCCGCTCGGTGCCGGCGTCAATCTCTCCGGTGGCCCCGTTGTCAAGCGCTCTCTACAGAAGAGATTGGTGATAAGGTCTGCTACTATTGAAGAAATAGAAGCAGAGAAGTCTGCTATTGAGACTGATGTTAAATCAAAGATGGAGAAGACTATTGAAACGCTTCGGACGAGTTTCAACTCCATAAGGACTGGGAGATCCAATGCAGCGATGCTTGACAAGATTGAGGTGGAATACTATGGAAGTCCAGTAAGTTTGAAAAGCATAGCCCAAATCAGTACTCCGGATGGAAGTTCTCTTTTGCTGCAACCATATGACAAATCCAGCTTGAAGGCTATAGAGAAAGCCATTGTGAATTCTGATCTTGGTGTGACCCCTAATAACGATGGAGATGTTATTCGACTGTCCTTGCCTCCCCTCACATCTGACAGAAGAAAGGAACTATCAAAGGTTGTTGCTAAACAGTCTGAAGAAGGGAAGGTTGCACTGAGGAACATTAGGAGAGATGCCTTGAAATCTTATGATAAACTCGAGAAGGAGAAGAAGCTGTCAGAAGACAACGTGAAGGATTTGTCAAGTGATTTGCAGAAACTAATTGATGTATACATGAAGAAGATAGAGGAGCTCTACAAACAGAAAGAAAAGGAATTGATGAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

275

Amino Acids

30.42

Weight (kDa)

9.46

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	111 - 273	1.5e-63	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	768
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	2 cut(s)	5, 170
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	445
AfeI	AGCGCT	1 cut(s)	215
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	7 cut(s)	154, 257, 323, 343, 424, 496, 679
AluBI	AGCT	4 cut(s)	166, 492, 712, 790
AluI	AGCT	4 cut(s)	166, 492, 712, 790
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	357
Ama87I	CYCGRG	1 cut(s)	695
Aor13HI	TCCGGA	1 cut(s)	448
Aor51HI	AGCGCT	1 cut(s)	215
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	371, 469
ApoI	RAATTY	1 cut(s)	520
AsiGI	ACCGGT	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	792
BbsI	GAAGAC	2 cut(s)	320, 726
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	2 cut(s)	383, 456
BccI	CCATC	3 cut(s)	301, 446, 545
BcoDI	GTCTC	1 cut(s)	281
BfmI	CTRYAG	2 cut(s)	221, 501
BfoI	RGCGCY	1 cut(s)	217
BisI	GCNGC	3 cut(s)	6, 372, 470
BlsI	GCNGC	3 cut(s)	7, 373, 471
BmcAI	AGTACT	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	178, 202
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	366, 661
BmuI	ACTGGG	1 cut(s)	366
BpiI	GAAGAC	2 cut(s)	320, 726
BsaHI	GRCGYC	1 cut(s)	183
BsaWI	WCCGGW	3 cut(s)	37, 194, 448
Bse118I	RCCGGY	2 cut(s)	37, 179
Bse1I	ACTGG	2 cut(s)	361, 413
BseAI	TCCGGA	1 cut(s)	448
BseGI	GGATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	2 cut(s)	361, 413
BseRI	GAGGAG	2 cut(s)	65, 800
BseXI	GCAGC	2 cut(s)	383, 456
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	792
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	4 cut(s)	38, 180, 195, 449
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	695
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	362, 526
BspACI	CCGC	2 cut(s)	5, 170
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	645
BspEI	TCCGGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	178, 202
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	172
BsrFI	RCCGGY	2 cut(s)	37, 179
BsrI	ACTGG	2 cut(s)	361, 413
BssAI	RCCGGY	2 cut(s)	37, 179
BssMI	GATC	2 cut(s)	362, 526
BssNAI	GTATAC	1 cut(s)	769
BssNI	GRCGYC	1 cut(s)	183
Bst1107I	GTATAC	1 cut(s)	769
Bst4CI	ACNGT	2 cut(s)	570, 630
Bst6I	CTCTTC	3 cut(s)	22, 115, 221
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	653
BstF5I	GGATG	1 cut(s)	457
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	365, 529
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	362, 526
BstSFI	CTRYAG	2 cut(s)	221, 501
BstV1I	GCAGC	2 cut(s)	383, 456
BstV2I	GAAGAC	2 cut(s)	320, 726
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BstZ17I	GTATAC	1 cut(s)	769
BsuRI	GGCC	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 650
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	2 cut(s)	37, 179
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	444
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	1 cut(s)	772
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	1 cut(s)	653
DpnI	GATC	2 cut(s)	364, 528
DpnII	GATC	2 cut(s)	362, 526
Eam1104I	CTCTTC	3 cut(s)	22, 115, 221
EarI	CTCTTC	3 cut(s)	22, 115, 221
Ecl136II	GAGCTC	1 cut(s)	790
Eco24I	GRGCYC	1 cut(s)	792
Eco32I	GATATC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	792
FaeI	CATG	1 cut(s)	775
FaiI	YATR	9 cut(s)	350, 405, 431, 478, 480, 503, 687, 769, 773
FatI	CATG	1 cut(s)	771
FauNDI	CATATG	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	3 cut(s)	6, 372, 470
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	3 cut(s)	6, 372, 470
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	3 cut(s)	6, 372, 470
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	4 cut(s)	38, 180, 195, 449
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	775
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	48, 89
HpaII	CCGG	4 cut(s)	38, 180, 195, 449
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	6 cut(s)	53, 333, 526, 592, 634, 718
Hpy188III	TCNNGA	3 cut(s)	154, 449, 697
Hpy8I	GTNNAC	1 cut(s)	769
HpyAV	CCTTC	6 cut(s)	490, 632, 637, 694, 724, 814
HpyCH4III	ACNGT	2 cut(s)	570, 630
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	4 cut(s)	371, 472, 650, 751
HpyF3I	CTNAG	1 cut(s)	653
HpySE526I	ACGT	1 cut(s)	726
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	775
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	448
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	362, 526
LmnI	GCTCC	2 cut(s)	31, 787
LpnPI	CCDG	8 cut(s)	51, 99, 193, 208, 342, 426, 462, 502
Lsp1109I	GCAGC	2 cut(s)	383, 456
LweI	GCATC	2 cut(s)	366, 661
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	364, 528
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	2 cut(s)	362, 526
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	4 cut(s)	138, 520, 759, 812
MnlI	CCTC	9 cut(s)	81, 86, 93, 136, 385, 588, 593, 648, 778
MroI	TCCGGA	1 cut(s)	448
MroNI	GCCGGC	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	2 cut(s)	137, 297
MspI	CCGG	4 cut(s)	38, 180, 195, 449
NaeI	GCCGGC	1 cut(s)	181
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	2 cut(s)	362, 526
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	775
NlaIV	GGNNCC	2 cut(s)	178, 202
NmuCI	GTSAC	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 332
PdiI	GCCGGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	48, 89
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	7, 373, 471
Psp124BI	GAGCTC	1 cut(s)	792
PspN4I	GGNNCC	2 cut(s)	178, 202
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	792
SaqAI	TTAA	2 cut(s)	137, 297
SatI	GCNGC	3 cut(s)	6, 372, 470
Sau3AI	GATC	2 cut(s)	362, 526
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	792
SfaNI	GCATC	2 cut(s)	366, 661
SfcI	CTRYAG	2 cut(s)	221, 501
Sfr274I	CTCGAG	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	4 cut(s)	138, 520, 759, 812
SsiI	CCGC	2 cut(s)	5, 170
SstI	GAGCTC	1 cut(s)	792
TaaI	ACNGT	2 cut(s)	570, 630
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	3 cut(s)	46, 565, 696
TasI	AATT	4 cut(s)	138, 520, 759, 812
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	48, 89
Tru1I	TTAA	2 cut(s)	137, 297
Tru9I	TTAA	2 cut(s)	137, 297
TscAI	CASTG	2 cut(s)	28, 657
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	2 cut(s)	371, 469
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	1 cut(s)	788
TspRI	CASTG	2 cut(s)	28, 657
XapI	RAATTY	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	327
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.