Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

41577669 .. 41581904

Gene Structure 4236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCAAAGCTAAACCCTCCCAAAGCCCTCCTCTCCATTCGAGATTCTTATGGCGGTGCACGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCTTCGAGCTCAGCTGCTAGTTATGTGACACCTCCTGGTGGCGTTGCTAAGTTTTCTGGCAATCCCATTGTCGTGAAGGAGCAATTGTTGCAAAAGAGAGCTGGAACTGTAAGGGGTGCTACTATTGAAGAAATAGAAGCGGAGAAGTCTGTGATTGAAAAAGATTCTAAAGGCAGGATGGAAAAGACATTGAAATGGTACGATCCAATTTCAATTCTATTAGGACAGGGAGGGCAAGCCCAGCCATGCTGGGCAAGATTGAGGTTGACTATTATGGAAGTCCAGTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

146

Amino Acids

15.82

Weight (kDa)

9.75

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 287
AclWI	GGATC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	275, 305, 340, 360
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	4 cut(s)	55, 156, 161, 248
AluI	AGCT	4 cut(s)	55, 156, 161, 248
Alw21I	GWGCWC	3 cut(s)	106, 149, 158
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	344
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	158
Bbv12I	GWGCWC	3 cut(s)	106, 149, 158
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	47, 319
BciT130I	CCWGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	129, 430
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	39, 330
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	129, 430
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	2 cut(s)	387, 396
BsgI	GTGCAG	1 cut(s)	15
BsiHKAI	GWGCWC	3 cut(s)	106, 149, 158
BslI	CCNNNNNNNGG	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	106, 149, 158
Bsp143I	GATC	1 cut(s)	349
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	99, 287
BspCNI	CTCAG	1 cut(s)	170
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	129, 430
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	36, 256
Bst6I	CTCTTC	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	125, 384
BstDEI	CTNAG	2 cut(s)	157, 195
BstF5I	GGATG	2 cut(s)	39, 330
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 153, 235, 388
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	39, 330
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	125, 384
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	1 cut(s)	393
CviJI	RGCY	9 cut(s)	55, 71, 127, 156, 161, 248, 386, 391, 437
CviKI_1	RGCY	9 cut(s)	55, 71, 127, 156, 161, 248, 386, 391, 437
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	157, 195
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	1 cut(s)	396
FaiI	YATR	5 cut(s)	96, 143, 171, 394, 422
FatI	CATG	1 cut(s)	392
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	26, 337
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	2 cut(s)	391, 400
Hin1II	CATG	1 cut(s)	396
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HinfI	GANTC	3 cut(s)	25, 89, 311
Hpy166II	GTNNAC	2 cut(s)	104, 414
Hpy188III	TCNNGA	2 cut(s)	86, 220
Hpy8I	GTNNAC	2 cut(s)	104, 414
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	36, 256
HpyCH4V	TGCA	3 cut(s)	32, 104, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 153, 235, 388
HpyF3I	CTNAG	2 cut(s)	157, 195
Hsp92II	CATG	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	3 cut(s)	127, 141, 287
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	3 cut(s)	106, 149, 158
MluCI	AATT	3 cut(s)	230, 354, 360
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	7 cut(s)	53, 72, 83, 86, 189, 371, 402
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	218, 340
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	29, 153, 235, 388
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	89, 311
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	2 cut(s)	387, 396
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	218, 340
SacI	GAGCTC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	106, 149, 158
SetI	ASST	6 cut(s)	57, 158, 163, 181, 250, 413
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	2 cut(s)	218, 340
Sse9I	AATT	3 cut(s)	230, 354, 360
SsiI	CCGC	2 cut(s)	99, 287
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	36, 256
TaqI	TCGA	2 cut(s)	85, 152
TasI	AATT	3 cut(s)	230, 354, 360
TfiI	GAWTC	2 cut(s)	89, 311
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	36
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.