Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

37468838 .. 37479374

Gene Structure 10537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG357000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCAAAGCTAAACCCTCCCAAAGCCCTCCTCTCCATTCGAGATTCTTATGGCGGTGCACGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCTTGGAGCTCAGCTGCTAGTTATGTGACACCTCCTGGTGGCGTTGCTAAGTTTTCTGGCAATCCCATTGTCGTGAAGCAGCAATTGTTGCAAAAGAGAGCTGGAACTGTAAGGGGTGCTACTATTGAAGAAATAGAAGCGGAGAAGTCTGTGATTGAAAAAGATGCTAAAGGCAGGATGGAAAAGACATTGAAATGCCCAGCCATGCTGGGCAAGATTGAGGTTGACTATTATGGAAGTCCAGTTGGCTTGAAGAGCCTTGCTCAAATTAGTTCTCCTGATGGAACTTCCCTATTGATTTCGCCATACGACAAATCCAGCTTAAAGTCTATTGAGAAGGCCATAGTGATACTCTTGACCCTGCGTCAACTCACATCAGATAGACGGAAGCCATTGACAAAAGTTTTATCAAAACAAGCCGAAGAAGGGAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGAAATGGACAGATGAGTATGTGAAGAAACTTGATAACATATCCAAACAGAAAGAGAAGAATAAAGGACCAATTCGGATTAATAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

258

Amino Acids

28.58

Weight (kDa)

9.84

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	116 - 248	2.1e-36	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 287
AcsI	RAATTY	1 cut(s)	771
AcuI	CTGAAG	1 cut(s)	614
AfiI	CCNNNNNNNGG	2 cut(s)	185, 573
AgsI	TTSAA	5 cut(s)	275, 305, 340, 400, 675
AhdI	GACNNNNNGTC	1 cut(s)	510
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	7 cut(s)	55, 156, 161, 248, 468, 617, 646
AluI	AGCT	7 cut(s)	55, 156, 161, 248, 468, 617, 646
Alw21I	GWGCWC	3 cut(s)	106, 149, 158
Alw44I	GTGCAC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	486
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	161, 226
ApoI	RAATTY	1 cut(s)	771
AseI	ATTAAT	1 cut(s)	765
Asp700I	GAANNNNTTC	1 cut(s)	627
AspS9I	GGNCC	2 cut(s)	36, 752
AvaII	GGWCC	2 cut(s)	36, 752
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	158
Bbv12I	GWGCWC	3 cut(s)	106, 149, 158
BbvI	GCAGC	2 cut(s)	148, 238
BccI	CCATC	3 cut(s)	47, 319, 422
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	649
BfaI	CTAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	2 cut(s)	162, 227
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	2 cut(s)	163, 228
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	36, 752
BmeRI	GACNNNNNGTC	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	36, 752
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	301, 595
BmuI	ACTGGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 573
Bse1I	ACTGG	2 cut(s)	129, 389
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	39, 330, 610
BseLI	CCNNNNNNNGG	2 cut(s)	185, 573
BseMII	CTCAG	2 cut(s)	171, 642
BseNI	ACTGG	2 cut(s)	129, 389
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	148, 238
BseYI	CCCAGC	2 cut(s)	346, 355
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	488
BsiHKAI	GWGCWC	3 cut(s)	106, 149, 158
BslI	CCNNNNNNNGG	2 cut(s)	185, 573
BsnI	GGCC	1 cut(s)	488
Bsp1286I	GDGCHC	3 cut(s)	106, 149, 158
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	99, 287
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	2 cut(s)	170, 643
BspQI	GCTCTTC	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	129, 389
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	36, 256
Bst6I	CTCTTC	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	157, 195, 651
BstF5I	GGATG	3 cut(s)	39, 330, 610
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 153, 235, 402, 614
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	148, 238
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	39, 330, 610
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	36, 752
CseI	GACGC	1 cut(s)	500
CviAII	CATG	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	157, 195, 651
DraI	TTTAAA	1 cut(s)	612
DriI	GACNNNNNGTC	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	395
Eam1105I	GACNNNNNGTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	36, 752
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	1 cut(s)	355
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FatI	CATG	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	162, 227
FokI	GGATG	3 cut(s)	26, 337, 617
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	2 cut(s)	162, 227
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	2 cut(s)	162, 227
GsaI	CCCAGC	2 cut(s)	350, 359
HaeIII	GGCC	1 cut(s)	488
HgaI	GACGC	1 cut(s)	500
Hin1II	CATG	1 cut(s)	355
HincII	GTYRAC	2 cut(s)	373, 515
HindII	GTYRAC	2 cut(s)	373, 515
HindIII	AAGCTT	1 cut(s)	615
HinfI	GANTC	2 cut(s)	25, 89
Hpy166II	GTNNAC	3 cut(s)	104, 373, 515
Hpy188I	TCNGA	4 cut(s)	526, 633, 652, 762
Hpy188III	TCNNGA	4 cut(s)	86, 220, 425, 502
Hpy8I	GTNNAC	3 cut(s)	104, 373, 515
HpyAV	CCTTC	5 cut(s)	478, 566, 571, 594, 628
HpyCH4III	ACNGT	2 cut(s)	36, 256
HpyCH4V	TGCA	4 cut(s)	32, 104, 238, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 153, 235, 402, 614
HpyF3I	CTNAG	3 cut(s)	157, 195, 651
Hsp92II	CATG	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	2 cut(s)	148, 238
LweI	GCATC	2 cut(s)	301, 595
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	172
MboII	GAAGA	6 cut(s)	127, 287, 412, 581, 721, 754
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	3 cut(s)	106, 149, 158
MluCI	AATT	4 cut(s)	230, 414, 756, 771
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	8 cut(s)	53, 72, 83, 86, 189, 361, 582, 646
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	5 cut(s)	138, 470, 611, 765, 775
MslI	CAYNNNNRTG	2 cut(s)	218, 340
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	5 cut(s)	29, 153, 235, 402, 614
NlaIII	CATG	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	163, 228
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	2 cut(s)	346, 355
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	36, 752
PvuII	CAGCTG	1 cut(s)	161
RseI	CAYNNNNRTG	2 cut(s)	218, 340
SacI	GAGCTC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	5 cut(s)	138, 470, 611, 765, 775
SatI	GCNGC	2 cut(s)	162, 227
Sau96I	GGNCC	2 cut(s)	36, 752
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	106, 149, 158
SfaNI	GCATC	2 cut(s)	301, 595
SinI	GGWCC	2 cut(s)	36, 752
SmiMI	CAYNNNNRTG	2 cut(s)	218, 340
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	4 cut(s)	230, 414, 756, 771
SsiI	CCGC	2 cut(s)	99, 287
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	36, 256
TaqI	TCGA	1 cut(s)	85
TasI	AATT	4 cut(s)	230, 414, 756, 771
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	5 cut(s)	138, 470, 611, 765, 775
Tru9I	TTAA	5 cut(s)	138, 470, 611, 765, 775
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	161, 226
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	636
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	36, 752
VspI	ATTAAT	1 cut(s)	765
XapI	RAATTY	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.