Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Forward (+)

15957138 .. 15960909

Gene Structure 3772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCCAAGCTAAACCCTCCCAAAGCCCTTCTCTCCATTCGAGATTCTTATGGCGGTGCACGGGCTTGGAAGCAATGCCAGCCCAGTACTGCTAATGTGTGCTCATGGAGCTCAGCTGCTAGTTATGTGACACCTCCGGGAGGCGCTGCTAAGTTTTCTGGCAATCCCGTTGTTGTGAAGAAGCAATTGTTGCAAAAGAGGCAAGTTTTTATTGCCGCAGAATTGTACTCTCGGCTAGCTGGAACTGTAAGGGCAGCTACTATTGAAGAAATAGAAGCGGAGAAGTCTGTGATCGAAAAAGATGCTAAAGGCAGGATGGAAAAGACTATTGAAACGGTACGATCCAATTTCAATTCTATTAGGACAGGGAGGGCAAGCCCAGCTATGCTGGACAAGATTGAGGTTGACTATTATGGAAGTCCAGTTGGCTTGAAGAGCCTTGCTCAAATTAGTTCTCCTGATGGAACTTCCCTATTGATTTCGCCATACGATAAATCCAGCTTAAAGTCTATTGAGAAGGCCATAGTTGCCTCTGATCTTGGCATGACTCCAAATAATGATGGAGAAGTGATACGGCTGACCCTGCCTCAACTCACATCAGATAGACGGAAGGAATTGACTAAAGTTGTATCAAAACAAGCTGAAGAAGGGAAGGTAGCATTGAGGAACATAAGAAGGGATACTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGAAATGGACAGATGAGTATGTGAAGAAGCTTGATACCATATCCAAACAGAAAGAGAAGGAATTGCTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

293

Amino Acids

32.36

Weight (kDa)

9.58

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	129 - 291	7.2e-64	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	99, 261, 323
AclWI	GGATC	1 cut(s)	381
AcuI	CTGAAG	2 cut(s)	708, 734
AfaI	GTAC	3 cut(s)	133, 272, 384
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	311, 377, 397, 478, 795
Alw21I	GWGCWC	3 cut(s)	106, 149, 158
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	381
AoxI	GGCC	1 cut(s)	564
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	3 cut(s)	161, 191, 299
Asp700I	GAANNNNTTC	1 cut(s)	747
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	183
AsuNHI	GCTAGC	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	158
Bbv12I	GWGCWC	3 cut(s)	106, 149, 158
BbvI	GCAGC	3 cut(s)	148, 178, 311
BccI	CCATC	4 cut(s)	47, 355, 500, 599
BceAI	ACGGC	1 cut(s)	635
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciVI	GTATCC	2 cut(s)	718, 769
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	2 cut(s)	165, 281
BfoI	RGCGCY	1 cut(s)	192
BfuI	GTATCC	2 cut(s)	718, 769
BisI	GCNGC	4 cut(s)	162, 192, 261, 300
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	4 cut(s)	163, 193, 262, 301
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	337
BmtI	GCTAGC	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	129, 467
Bse3DI	GCAATG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	39, 366
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	2 cut(s)	171, 762
BseNI	ACTGG	2 cut(s)	129, 467
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	148, 178, 311
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	566
BsiHKAI	GWGCWC	3 cut(s)	106, 149, 158
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	566
Bsp1286I	GDGCHC	3 cut(s)	106, 149, 158
Bsp143I	GATC	3 cut(s)	336, 386, 580
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	3 cut(s)	99, 261, 323
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	170, 763
BspOI	GCTAGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	381
BspQI	GCTCTTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	129, 467
BssMI	GATC	3 cut(s)	336, 386, 580
Bst4CI	ACNGT	3 cut(s)	36, 292, 382
Bst6I	CTCTTC	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	125, 282, 421
BstDEI	CTNAG	3 cut(s)	157, 195, 771
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	39, 366
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	339, 389, 583
BstMBI	GATC	3 cut(s)	336, 386, 580
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 124, 153, 235, 244, 425, 480, 572, 628
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	148, 178, 311
BsuI	GTATCC	2 cut(s)	718, 769
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	39, 366
Cac8I	GCNNGC	3 cut(s)	125, 282, 421
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	132, 271, 383
CviAII	CATG	2 cut(s)	150, 589
CviQI	GTAC	3 cut(s)	132, 271, 383
DdeI	CTNAG	3 cut(s)	157, 195, 771
DpnI	GATC	3 cut(s)	338, 388, 582
DpnII	GATC	3 cut(s)	336, 386, 580
DraI	TTTAAA	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	2 cut(s)	708, 734
EcoICRI	GAGCTC	1 cut(s)	156
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	2 cut(s)	153, 592
FalI	AAGNNNNNCTT	2 cut(s)	712, 744
FatI	CATG	2 cut(s)	149, 588
Fnu4HI	GCNGC	4 cut(s)	162, 192, 261, 300
FokI	GGATG	2 cut(s)	26, 373
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	4 cut(s)	162, 192, 261, 300
FspBI	CTAG	2 cut(s)	165, 281
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	162, 192, 261, 300
GsaI	CCCAGC	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	153, 592
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	2 cut(s)	735, 833
HinfI	GANTC	3 cut(s)	25, 89, 592
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	104, 451
Hpy188I	TCNGA	4 cut(s)	580, 646, 753, 772
Hpy188III	TCNNGA	2 cut(s)	86, 503
Hpy8I	GTNNAC	2 cut(s)	104, 451
HpyAV	CCTTC	9 cut(s)	83, 556, 649, 686, 691, 714, 748, 856, 868
HpyCH4III	ACNGT	3 cut(s)	36, 292, 382
HpyCH4V	TGCA	4 cut(s)	32, 104, 238, 805
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 124, 153, 235, 244, 425, 480, 572, 628
HpyF3I	CTNAG	3 cut(s)	157, 195, 771
Hsp92II	CATG	2 cut(s)	153, 592
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	336, 386, 580
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	3 cut(s)	148, 178, 311
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	165, 281
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	338, 388, 582
MboI	GATC	3 cut(s)	336, 386, 580
MboII	GAAGA	5 cut(s)	235, 323, 490, 701, 841
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	3 cut(s)	106, 149, 158
MluCI	AATT	7 cut(s)	230, 266, 391, 397, 492, 659, 866
MlyI	GAGTC	2 cut(s)	19, 586
MmeI	TCCRAC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	747
MseI	TTAA	2 cut(s)	548, 731
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	9 cut(s)	29, 124, 153, 235, 244, 425, 480, 572, 628
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	336, 386, 580
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	153, 592
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	747
PfeI	GAWTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	163, 193, 262, 301
PleI	GAGTC	2 cut(s)	19, 586
PpsI	GAGTC	2 cut(s)	19, 586
Psp124BI	GAGCTC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	3 cut(s)	133, 272, 384
RsaNI	GTAC	3 cut(s)	132, 271, 383
SacI	GAGCTC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	548, 731
SatI	GCNGC	4 cut(s)	162, 192, 261, 300
Sau3AI	GATC	3 cut(s)	336, 386, 580
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	2 cut(s)	19, 586
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	106, 149, 158
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
Sse9I	AATT	7 cut(s)	230, 266, 391, 397, 492, 659, 866
SsiI	CCGC	3 cut(s)	99, 261, 323
SspMI	CTAG	2 cut(s)	165, 281
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	36, 292, 382
TaqI	TCGA	2 cut(s)	85, 339
TasI	AATT	7 cut(s)	230, 266, 391, 397, 492, 659, 866
TatI	WGTACW	2 cut(s)	131, 270
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	548, 731
Tru9I	TTAA	2 cut(s)	548, 731
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	161, 191, 299
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	756
TspGWI	ACGGA	1 cut(s)	667
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	747
XspI	CTAG	2 cut(s)	165, 281
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.