Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

19263635 .. 19267465

Gene Structure 3831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23500.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGACCCATCTCTCTCCTGCAAATCCTGTACGCTCTATCCTCCAACCCAAGCAAAACCCTCCCAAAGCCCTGCTCTCCATTCGAGATTCTTATGGGGCTGGACTGGTATGGAAGAAATGCCAGCCTAGCACGGTTAATGTGTGCTCATGGAGCTCAGCTGCTAGTTATGTGACACCTCCTGGTGGCGCTGCCAAGTTTTCTGGCAATCCCATTGTTGTGAAGAAGCAATTGTTGCAAAAGAGAGCTGGAACTGTAAGGGCTGCTACTATCGAAGAAATAGAAGCGGAGAAGTCTGTGATTGAAAAAGATGCTAAAGGCAGGATGGAAAAGACTATTGAAACAGTACGATCTAATTTCAATTCTATTAGGACAGGGAGGGCTAGCCCAGCCATGCTGGACAAGATTGAGGTTGACTATTATGGAAGCCCAGTCGGCTTGAAGAGCCTTGCTCAAATCAGTTCTCCAGATGGAACTTCGCTATTGATTTCACCATATGACAAATCCAGTTTAAAGTCTATTGAGAAGGCCATAGTTGCCTCTGATCTTGGTATGACTCCAAATAATGATGGAGAAGTGATACGGTTGACCCTGCCTCAACTTACATCAGATAGGCGGAAGGAATTGACAAAAGTTGTGTCAAAACAAGCAGAAGAAGGGAAGGTAGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAAAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGAAATGGACAGATGAGTATGTGAAGAAGCTTGATACCATATCCAAACAGAAGGAGAAGGAATTGCTGAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

282

Amino Acids

30.99

Weight (kDa)

9.58

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	117 - 278	4.8e-63	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	287, 616
AcuI	CTGAAG	1 cut(s)	698
AfaI	GTAC	2 cut(s)	33, 348
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	305, 341, 361, 442, 759
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	6 cut(s)	156, 161, 248, 701, 730, 799
AluI	AGCT	6 cut(s)	156, 161, 248, 701, 730, 799
Alw21I	GWGCWC	2 cut(s)	149, 158
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	161, 191, 263
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	483
AsuNHI	GCTAGC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	149, 158
BbvI	GCAGC	3 cut(s)	148, 178, 250
BccI	CCATC	4 cut(s)	18, 319, 464, 563
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	733
BfaI	CTAG	3 cut(s)	129, 165, 384
BfoI	RGCGCY	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	733
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	162, 192, 264
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	3 cut(s)	163, 193, 265
Bme1390I	CCNGG	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	301, 679
BmtI	GCTAGC	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	425
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	3 cut(s)	111, 431, 507
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	330, 694
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	171, 726
BseNI	ACTGG	3 cut(s)	111, 431, 507
BseXI	GCAGC	3 cut(s)	148, 178, 250
BseYI	CCCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	530
BsiHKAI	GWGCWC	2 cut(s)	149, 158
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	149, 158
Bsp143I	GATC	2 cut(s)	350, 544
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	287, 616
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	2 cut(s)	170, 727
BspOI	GCTAGC	1 cut(s)	387
BspQI	GCTCTTC	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	111, 431, 507
BssMI	GATC	2 cut(s)	350, 544
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	4 cut(s)	136, 256, 346, 585
Bst6I	CTCTTC	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	125, 385
BstDEI	CTNAG	2 cut(s)	157, 735
BstF5I	GGATG	2 cut(s)	330, 694
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	2 cut(s)	353, 547
BstMBI	GATC	2 cut(s)	350, 544
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 153, 235, 389, 435, 444, 536, 698
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	3 cut(s)	148, 178, 250
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	330, 694
Cac8I	GCNNGC	2 cut(s)	125, 385
CfoI	GCGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	32, 347
CviAII	CATG	2 cut(s)	150, 394
CviQI	GTAC	2 cut(s)	32, 347
DdeI	CTNAG	2 cut(s)	157, 735
DpnI	GATC	2 cut(s)	352, 546
DpnII	GATC	2 cut(s)	350, 544
DraI	TTTAAA	2 cut(s)	513, 696
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	631
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	2 cut(s)	153, 397
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FatI	CATG	2 cut(s)	149, 393
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	162, 192, 264
FokI	GGATG	2 cut(s)	337, 701
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	162, 192, 264
FspBI	CTAG	3 cut(s)	129, 165, 384
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	162, 192, 264
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	530
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	153, 397
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	2 cut(s)	415, 588
HindII	GTYRAC	2 cut(s)	415, 588
HindIII	AAGCTT	2 cut(s)	699, 797
HinfI	GANTC	2 cut(s)	89, 556
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	2 cut(s)	415, 588
Hpy188I	TCNGA	4 cut(s)	544, 610, 717, 736
Hpy188III	TCNNGA	2 cut(s)	86, 467
Hpy8I	GTNNAC	2 cut(s)	415, 588
HpyAV	CCTTC	9 cut(s)	520, 613, 650, 655, 678, 712, 814, 820, 832
HpyCH4III	ACNGT	4 cut(s)	136, 256, 346, 585
HpyCH4V	TGCA	3 cut(s)	23, 238, 769
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 153, 235, 389, 435, 444, 536, 698
HpyF3I	CTNAG	2 cut(s)	157, 735
Hsp92II	CATG	2 cut(s)	153, 397
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	350, 544
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	3 cut(s)	148, 178, 250
LweI	GCATC	2 cut(s)	301, 679
MaeI	CTAG	3 cut(s)	129, 165, 384
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	352, 546
MboI	GATC	2 cut(s)	350, 544
MboII	GAAGA	6 cut(s)	127, 235, 287, 454, 665, 805
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	2 cut(s)	149, 158
MluCI	AATT	5 cut(s)	230, 355, 361, 623, 830
MlyI	GAGTC	1 cut(s)	550
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	9 cut(s)	53, 72, 189, 372, 403, 550, 606, 666, 730
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	4 cut(s)	138, 512, 695, 844
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	8 cut(s)	129, 153, 235, 389, 435, 444, 536, 698
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	350, 544
NheI	GCTAGC	1 cut(s)	383
NlaIII	CATG	2 cut(s)	153, 397
NmuCI	GTSAC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	163, 193, 265
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	33, 348
RsaNI	GTAC	2 cut(s)	32, 347
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	4 cut(s)	138, 512, 695, 844
SatI	GCNGC	3 cut(s)	162, 192, 264
Sau3AI	GATC	2 cut(s)	350, 544
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	149, 158
SfaNI	GCATC	2 cut(s)	301, 679
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	5 cut(s)	230, 355, 361, 623, 830
SsiI	CCGC	2 cut(s)	287, 616
SspMI	CTAG	3 cut(s)	129, 165, 384
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	4 cut(s)	136, 256, 346, 585
TaqI	TCGA	2 cut(s)	85, 273
TasI	AATT	5 cut(s)	230, 355, 361, 623, 830
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	4 cut(s)	138, 512, 695, 844
Tru9I	TTAA	4 cut(s)	138, 512, 695, 844
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	161, 191, 263
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	3 cut(s)	129, 165, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.