Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Forward (+)

19374113 .. 19380646

Gene Structure 6534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007645

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTGCGTCCATCAAACATCGGAGAGTCTTCAGTACACGGCCGTTGATGTACCCAGCGCATGGCTGGGCACGTGATATCAAAGTTGATGAATGGCATGTGCTGGACTCCTGCACGGTCCATCCTCCAACCGAAGCTAAACCCTCCCCAAGCCCTCCTTTCCATTCGAGGTACATAACCCATTACCCATTTTATTCTTATGGCGGTGCACGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCGTGGAGCTCAGCTGCTAGCCTCCTGGTGGCGTTGCTAACTGGAACTGTAAGGGGTGCTACTATTGAAGAAATAGAAGAGGAGAAGTCTGTGATCGAAAAAGATGCTAAGGACAGGATGGAAAAGACTATTGAAATGGTACGATCCAACTTCAATTCTATTAGGACAGGGACGGCAAGCCCAGCCATGCTGGGCAAGATTGAGGTTGACTATTATGGAAGTCCAGTTGGCTTGAAGAGCCTTGCTCAAATTAGTTCTCCTGATGGAACTTCCCTATTGATTTCGCCATACGACAAATCCAGCTTAAAGTCTATTGAGAAGGCCATAGTTGCGTCTGATCTTGTTGTATCAAAACAAGCCGAAGAAGGGAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGAAATGGACAGATGAGTATGTGAAGAAACTTGATACCATATCCAAACAGAAAGAGAAGGTATTTGAAGTTGGAATTCTCTGTCTTGAAGTGGAGATTGATAGTATAGAGGCTGGTAGCTTGGTAGTCTCTAACAAGGTGTTGGCAAAGAGTGGGGTAAATAGTGTCTCTCTTATTCCCCAAAAGGATCTGAAAGTGTTGTTGAAGAACTCTGGTGCACCCAAGGTCTGCTTCCAACCGAGGGAATGCAACACGGTTCATGTGTTAGCTAGATTCATAGTGACAGAATGTATTGATTTGGCTTCTATTCTACTTGCAGAAGTCAGAGAGGATAAAGCAAGTTTCAAGCATCAGTTGATTCTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

366

Amino Acids

40.56

Weight (kDa)

8.76

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	132 - 200	6.4e-21	Ribosome recycling factor
RRF	PF01765	200 - 263	2.7e-15	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	62
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	390, 924
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	804
AcuI	CTGAAG	2 cut(s)	16, 659
AcvI	CACGTG	1 cut(s)	74
AfaI	GTAC	4 cut(s)	37, 53, 173, 393
AfiI	CCNNNNNNNGG	4 cut(s)	62, 280, 618, 970
AgsI	TTSAA	9 cut(s)	320, 386, 406, 487, 720, 797, 818, 934, 1075
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	944, 976
AluBI	AGCT	8 cut(s)	137, 261, 266, 555, 662, 691, 849, 998
AluI	AGCT	8 cut(s)	137, 261, 266, 555, 662, 691, 849, 998
Alw21I	GWGCWC	4 cut(s)	211, 254, 263, 949
Alw26I	GTCTC	2 cut(s)	862, 901
Alw44I	GTGCAC	2 cut(s)	207, 945
AlwI	GGATC	2 cut(s)	390, 924
AoxI	GGCC	2 cut(s)	41, 573
ApaLI	GTGCAC	2 cut(s)	207, 945
ApeKI	GCWGC	2 cut(s)	5, 266
ApoI	RAATTY	1 cut(s)	804
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	118
AsuNHI	GCTAGC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	3 cut(s)	73, 211, 949
BanII	GRGCYC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	253
BbrPI	CACGTG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	4 cut(s)	211, 254, 263, 949
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	20, 129, 364, 509
BceAI	ACGGC	3 cut(s)	28, 56, 441
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	694
BcoDI	GTCTC	2 cut(s)	862, 901
BfaI	CTAG	2 cut(s)	270, 999
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	2 cut(s)	6, 267
BlpI	GCTNAGC	1 cut(s)	262
BlsI	GCNGC	2 cut(s)	7, 268
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	346, 640, 1087
BmtI	GCTAGC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	481, 513
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	692
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	951, 968
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 280, 618, 970
Bse1I	ACTGG	3 cut(s)	234, 298, 476
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	951, 968
BseGI	GGATG	3 cut(s)	121, 375, 655
BseLI	CCNNNNNNNGG	4 cut(s)	62, 280, 618, 970
BseMII	CTCAG	2 cut(s)	276, 687
BseNI	ACTGG	3 cut(s)	234, 298, 476
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	3 cut(s)	73, 211, 949
BseX3I	CGGCCG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	4 cut(s)	55, 66, 433, 442
BsgI	GTGCAG	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	43, 575
BsiEI	CGRYCG	1 cut(s)	44
BsiHKAI	GWGCWC	4 cut(s)	211, 254, 263, 949
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	4 cut(s)	62, 280, 618, 970
BsmAI	GTCTC	2 cut(s)	862, 901
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	980
BsnI	GGCC	2 cut(s)	43, 575
Bsp1286I	GDGCHC	5 cut(s)	73, 211, 254, 263, 949
Bsp143I	GATC	4 cut(s)	345, 395, 589, 916
Bsp1720I	GCTNAGC	1 cut(s)	262
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	43, 575
BspCNI	CTCAG	2 cut(s)	275, 688
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	390, 924
BspQI	GCTCTTC	1 cut(s)	482
BsrI	ACTGG	3 cut(s)	234, 298, 476
BssECI	CCNNGG	2 cut(s)	951, 968
BssMI	GATC	4 cut(s)	345, 395, 589, 916
BssSI	CACGAG	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	951
Bst2BI	CACGAG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	118, 301, 985
Bst6I	CTCTTC	2 cut(s)	324, 482
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	230, 271, 430
BstDEI	CTNAG	3 cut(s)	262, 360, 696
BstF5I	GGATG	3 cut(s)	121, 375, 655
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	4 cut(s)	348, 398, 592, 919
BstMAI	GTCTC	2 cut(s)	862, 901
BstMBI	GATC	4 cut(s)	345, 395, 589, 916
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 434, 489, 581, 659
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	276
BstSLI	GKGCMC	3 cut(s)	73, 211, 949
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BstZI	CGGCCG	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	43, 575
BtsCI	GGATG	3 cut(s)	121, 375, 655
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	230, 271, 430
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	573
Csp6I	GTAC	4 cut(s)	36, 52, 172, 392
CviAII	CATG	4 cut(s)	62, 98, 439, 989
CviQI	GTAC	4 cut(s)	36, 52, 172, 392
DdeI	CTNAG	3 cut(s)	262, 360, 696
DpnI	GATC	4 cut(s)	347, 397, 591, 918
DpnII	GATC	4 cut(s)	345, 395, 589, 916
DraI	TTTAAA	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	324, 482
EarI	CTCTTC	2 cut(s)	324, 482
Ecl136II	GAGCTC	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	951
Eco24I	GRGCYC	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	118
Eco52I	CGGCCG	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	261
Eco57I	CTGAAG	2 cut(s)	16, 659
Eco72I	CACGTG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	804
EcoRII	CCWGG	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	951
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	4 cut(s)	65, 101, 442, 992
FalI	AAGNNNNNCTT	6 cut(s)	142, 174, 637, 669, 944, 976
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	4 cut(s)	61, 97, 438, 988
Fnu4HI	GCNGC	2 cut(s)	6, 267
FokI	GGATG	3 cut(s)	108, 382, 662
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	6, 267
FspBI	CTAG	2 cut(s)	270, 999
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	6, 267
GsaI	CCCAGC	4 cut(s)	59, 70, 437, 446
HaeIII	GGCC	2 cut(s)	43, 575
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	65, 101, 442, 992
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	4 cut(s)	27, 107, 1002, 1087
Hpy166II	GTNNAC	4 cut(s)	38, 209, 460, 947
Hpy188I	TCNGA	6 cut(s)	24, 589, 678, 697, 921, 1055
Hpy188III	TCNNGA	2 cut(s)	512, 815
Hpy8I	GTNNAC	4 cut(s)	38, 209, 460, 947
HpyAV	CCTTC	6 cut(s)	565, 611, 616, 639, 673, 781
HpyCH4III	ACNGT	3 cut(s)	118, 301, 985
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	7 cut(s)	114, 209, 730, 947, 978, 1046, 1094
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 434, 489, 581, 659
HpyF3I	CTNAG	3 cut(s)	262, 360, 696
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	4 cut(s)	65, 101, 442, 992
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	345, 395, 589, 916
LguI	GCTCTTC	1 cut(s)	482
LmnI	GCTCC	1 cut(s)	258
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	346, 640, 1087
MaeI	CTAG	2 cut(s)	270, 999
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	1009
MalI	GATC	4 cut(s)	347, 397, 591, 918
MboI	GATC	4 cut(s)	345, 395, 589, 916
MboII	GAAGA	8 cut(s)	22, 232, 332, 341, 499, 626, 766, 946
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	5 cut(s)	73, 211, 254, 263, 949
MluCI	AATT	3 cut(s)	406, 501, 804
MlyI	GAGTC	2 cut(s)	36, 101
MmeI	TCCRAC	4 cut(s)	152, 423, 781, 988
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	3 cut(s)	243, 557, 656
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	980
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	5 cut(s)	258, 434, 489, 581, 659
NdeII	GATC	4 cut(s)	345, 395, 589, 916
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	4 cut(s)	65, 101, 442, 992
NmuCI	GTSAC	1 cut(s)	1009
NspI	RCATGY	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	482
PctI	GAATGC	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	1002, 1087
PflMI	CCANNNNNTGG	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	7, 268
PleI	GAGTC	2 cut(s)	35, 101
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
PpsI	GAGTC	2 cut(s)	35, 101
Ppu21I	YACGTR	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	276
PspCI	CACGTG	1 cut(s)	74
PspFI	CCCAGC	4 cut(s)	55, 66, 433, 442
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	916
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	4 cut(s)	37, 53, 173, 393
RsaNI	GTAC	4 cut(s)	36, 52, 172, 392
SacI	GAGCTC	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	482
SaqAI	TTAA	3 cut(s)	243, 557, 656
SatI	GCNGC	2 cut(s)	6, 267
Sau3AI	GATC	4 cut(s)	345, 395, 589, 916
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	36, 101
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	5 cut(s)	73, 211, 254, 263, 949
SfaNI	GCATC	3 cut(s)	346, 640, 1087
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	3 cut(s)	406, 501, 804
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	2 cut(s)	270, 999
SstI	GAGCTC	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	3 cut(s)	118, 301, 985
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	167, 348
TasI	AATT	3 cut(s)	406, 501, 804
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	1002, 1087
Tru1I	TTAA	3 cut(s)	243, 557, 656
Tru9I	TTAA	3 cut(s)	243, 557, 656
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	1009
TseI	GCWGC	2 cut(s)	5, 266
Tsp45I	GTSAC	1 cut(s)	1009
TspDTI	ATGAA	4 cut(s)	105, 681, 977, 994
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	62
VneI	GTGCAC	2 cut(s)	207, 945
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	804
XceI	RCATGY	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	270, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.