Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Forward (+)

27191655 .. 27195746

Gene Structure 4092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCAAAGCTAAACCCTCCACATGCCCTCCTCTCCATTCGAGATTCTTATGGCGGTGCATGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCGTGGAGCTCAGCTGCTAGTTATGTGACACCTCCTGGTGGCGTTGCTAAGTTTTCTGCCAATCCCATTGTCGTGGAGGAGCAATTGTTGCAAAAGAGGCAAACTGATTCGCTTTCTGATATTTATTTTGATGAAATATCCAGAGCTGGAACTGTAAGGGGTGCTACTATTGAAGAAATAGAAGAGGAGAAGTCTGTGATCGAAAAAGATGCTGTAAGTTTTTCTATATGTTCTATTAGGACAGGGAGGGCAAGCCCAGCCATACTGGGCAAGATTGAGTTAAGAATTAATTTAGGGTTTGTTGACTATTATGGAAGTCCAGTTGGCTTGAAGAGCCTTGCTCAAGTTAGTTATCCTGATGGAACTTCGCTATTGATTTCACCATACGACAAATCCAGCTTAAAGTCTATTGAGAAGGCCATAGTTGCCTCTGATCTTGTTGTATCAAAACAAGCCAAAGAAGGGAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGACACTCTCAAGGACTTTTCAAGTGATTTGCAGGTATTTGAAGTTGGAATTCTCCATCTTGAAGTGGAGATTGATAGTATAGAGGCTGGTAGCTTGGTAGTCTCTAACGAGGTGTTGGCAAAGCATGGGGTAAATAGTGTCGCTCTTATTCCCCAAAGGTATCTGAAAGTGCTGTTGAAGAACTCTGGTGCACCCAAGGTCTGCTTCCAACCGAGGGAATGCAACAGAGTGATTGTGCTTCTCTACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

314

Amino Acids

34.3

Weight (kDa)

8.65

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	127 - 197	2.7e-16	Ribosome recycling factor
RRF	PF01765	197 - 241	1e-07	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	712
AciI	CCGC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	738
AcuI	CTGAAG	1 cut(s)	650
AfiI	CCNNNNNNNGG	3 cut(s)	185, 609, 904
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	6 cut(s)	320, 478, 711, 731, 752, 868
AjnI	CCWGG	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AluBI	AGCT	8 cut(s)	55, 156, 161, 293, 546, 653, 682, 783
AluI	AGCT	8 cut(s)	55, 156, 161, 293, 546, 653, 682, 783
Alw21I	GWGCWC	3 cut(s)	149, 158, 883
Alw26I	GTCTC	1 cut(s)	796
Alw44I	GTGCAC	1 cut(s)	879
AoxI	GGCC	1 cut(s)	564
ApaLI	GTGCAC	1 cut(s)	879
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	738
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	663
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	883
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	148
Bbv12I	GWGCWC	3 cut(s)	149, 158, 883
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	47, 500, 753
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	796
BfaI	CTAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	712
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	2 cut(s)	123, 422
BmsI	GCATC	2 cut(s)	346, 631
BmuI	ACTGGG	2 cut(s)	123, 422
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	2 cut(s)	474, 683
BsaJI	CCNNGG	2 cut(s)	885, 902
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 609, 904
Bse1I	ACTGG	3 cut(s)	129, 417, 467
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	885, 902
BseGI	GGATG	2 cut(s)	39, 646
BseLI	CCNNNNNNNGG	3 cut(s)	185, 609, 904
BseMII	CTCAG	2 cut(s)	171, 678
BseNI	ACTGG	3 cut(s)	129, 417, 467
BseRI	GAGGAG	3 cut(s)	65, 239, 347
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	566
BsiHKAI	GWGCWC	3 cut(s)	149, 158, 883
BslI	CCNNNNNNNGG	3 cut(s)	185, 609, 904
BsmAI	GTCTC	1 cut(s)	796
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	1 cut(s)	566
Bsp1286I	GDGCHC	3 cut(s)	149, 158, 883
Bsp143I	GATC	2 cut(s)	345, 580
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	170, 679
BspMI	ACCTGC	1 cut(s)	712
BspQI	GCTCTTC	1 cut(s)	473
BsrI	ACTGG	3 cut(s)	129, 417, 467
BssECI	CCNNGG	2 cut(s)	885, 902
BssMI	GATC	2 cut(s)	345, 580
BssSI	CACGAG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	885
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	36, 301
Bst6I	CTCTTC	2 cut(s)	324, 473
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	125, 400
BstDEI	CTNAG	3 cut(s)	157, 195, 687
BstF5I	GGATG	2 cut(s)	39, 646
BstKTI	GATC	2 cut(s)	348, 583
BstMAI	GTCTC	1 cut(s)	796
BstMBI	GATC	2 cut(s)	345, 580
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 153, 235, 244, 404, 480, 572, 650
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	2 cut(s)	71, 940
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	39, 646
BtsIMutI	CAGTG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	2 cut(s)	125, 400
Cfr13I	GGNCC	1 cut(s)	36
CviAII	CATG	4 cut(s)	68, 105, 815, 937
DdeI	CTNAG	3 cut(s)	157, 195, 687
DpnI	GATC	2 cut(s)	347, 582
DpnII	GATC	2 cut(s)	345, 580
DraI	TTTAAA	1 cut(s)	648
Eam1104I	CTCTTC	2 cut(s)	324, 473
EarI	CTCTTC	2 cut(s)	324, 473
Ecl136II	GAGCTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	885
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	738
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	885
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	885
FaeI	CATG	4 cut(s)	71, 108, 818, 940
FalI	AAGNNNNNCTT	4 cut(s)	628, 660, 878, 910
FatI	CATG	4 cut(s)	67, 104, 814, 936
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	26, 653
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	566
Hin1II	CATG	4 cut(s)	71, 108, 818, 940
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	3 cut(s)	25, 89, 254
HphI	GGTGA	1 cut(s)	519
Hpy166II	GTNNAC	2 cut(s)	451, 881
Hpy188I	TCNGA	5 cut(s)	265, 580, 669, 688, 855
Hpy188III	TCNNGA	4 cut(s)	86, 288, 503, 749
Hpy8I	GTNNAC	2 cut(s)	451, 881
HpyAV	CCTTC	5 cut(s)	556, 602, 607, 630, 664
HpyCH4III	ACNGT	2 cut(s)	36, 301
HpyCH4V	TGCA	6 cut(s)	32, 104, 238, 721, 881, 912
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 153, 235, 244, 404, 480, 572, 650
HpyF3I	CTNAG	3 cut(s)	157, 195, 687
Hsp92II	CATG	4 cut(s)	71, 108, 818, 940
Kzo9I	GATC	2 cut(s)	345, 580
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	2 cut(s)	153, 226
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	346, 631
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	347, 582
MboI	GATC	2 cut(s)	345, 580
MboII	GAAGA	5 cut(s)	127, 332, 341, 490, 880
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	3 cut(s)	149, 158, 883
MluCI	AATT	4 cut(s)	230, 432, 436, 738
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	3 cut(s)	70, 715, 922
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	5 cut(s)	138, 428, 435, 548, 647
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	914
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	8 cut(s)	29, 153, 235, 244, 404, 480, 572, 650
NdeII	GATC	2 cut(s)	345, 580
NlaIII	CATG	4 cut(s)	71, 108, 818, 940
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	2 cut(s)	71, 940
PciI	ACATGT	1 cut(s)	936
PciSI	GCTCTTC	1 cut(s)	473
PctI	GAATGC	1 cut(s)	914
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	89, 254
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PscI	ACATGT	1 cut(s)	936
PshBI	ATTAAT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	5 cut(s)	138, 428, 435, 548, 647
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	345, 580
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	149, 158, 883
SfaNI	GCATC	2 cut(s)	346, 631
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	489, 698
SmoI	CTYRAG	2 cut(s)	489, 698
Sse9I	AATT	4 cut(s)	230, 432, 436, 738
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	885
TaaI	ACNGT	2 cut(s)	36, 301
TaqI	TCGA	2 cut(s)	85, 348
TasI	AATT	4 cut(s)	230, 432, 436, 738
TfiI	GAWTC	2 cut(s)	89, 254
Tru1I	TTAA	5 cut(s)	138, 428, 435, 548, 647
Tru9I	TTAA	5 cut(s)	138, 428, 435, 548, 647
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	294, 672
TspRI	CASTG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	1 cut(s)	738
XceI	RCATGY	2 cut(s)	71, 940
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.