Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

4318070 .. 4318372

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG051200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCGAACCCAAACCCTCCCAAAGCCCTCCTCTCCATTCGAGTTACTTATGGCGGTGCACGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCGTGGAGCTCAGCTGCTAGTTATGTGACACCTCCTGGTGGCGTTGCTAAGTTATGTAAATGGTTGAGCTTCAGTTTTCAAACTTTTATAGTTCCCCTCTTTTGTGCTGATAACTTGCAATGTTGTTTATACCCACTTCATGAAAAGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

100

Amino Acids

10.99

Weight (kDa)

9.38

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	156, 161, 216
AluI	AGCT	3 cut(s)	156, 161, 216
Alw21I	GWGCWC	3 cut(s)	106, 149, 158
Alw44I	GTGCAC	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	148
Bbv12I	GWGCWC	3 cut(s)	106, 149, 158
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	15
BsiHKAI	GWGCWC	3 cut(s)	106, 149, 158
BslI	CCNNNNNNNGG	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	106, 149, 158
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	157, 195
BstF5I	GGATG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 153
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	125
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	36
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	5 cut(s)	71, 127, 156, 161, 216
CviKI_1	RGCY	5 cut(s)	71, 127, 156, 161, 216
DdeI	CTNAG	2 cut(s)	157, 195
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	1 cut(s)	290
FaiI	YATR	7 cut(s)	96, 143, 171, 202, 236, 277, 288
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	290
HinfI	GANTC	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	32, 104, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 153
HpyF3I	CTNAG	2 cut(s)	157, 195
Hsp92II	CATG	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	6 cut(s)	33, 42, 137, 142, 168, 195
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	88, 172
MboII	GAAGA	1 cut(s)	127
MhlI	GDGCHC	3 cut(s)	106, 149, 158
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	53, 72, 83, 86, 189, 254
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	29, 153
NlaIII	CATG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	172
PagI	TCATGA	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	106, 149, 158
SetI	ASST	4 cut(s)	158, 163, 181, 218
SinI	GGWCC	1 cut(s)	36
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	275, 303
TspRI	CASTG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	36
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.