Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

21081996 .. 21086141

Gene Structure 4146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G240300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCGACCCACTTCTCTCCTGCAACCCCTGTACGCTTCTTCCTCCAACCCACGCAAAACCCTCCCAAAACCCTCCTCTCCGTTCGAGACTCCTTTGGCGGAGGACCGGTTTGTAAGAAATGCCAGCCCATAACGGTTAATGTATGCTCATGGAGCTCAACTGTTAGTTATGTAGGATCTCAGGATGGTTCCATGAAGTTTTCTGGTAATCCTATTGTTGTCAAGAAGCAATTGTTGCAAAAGAGAGCTGGAACTGTAAGGGCTGCCACTATTGAAGAAATAGAAGCAGAGAAGTCTTTGATAAAAAAAGATGCTAAAGGAAGGATGGAAAAGACTATCGAACTGGTACGGTCCAATTTCAATTCTATTCGGACAGGGAGGGCAAGCCCAGCCATGCTGGACAAGATTGAGGTTGAATACTATGGAAGCCCCGTTGGCTTGAAGACCATTGCTCAAATTAGTTCTCCTGATGCAAGTTCCTTCTTGGTTCAGCCATATGATAAATCCAGCTTAAAGGCTATAGAGAAGGCCATAGTTAGCTCTGATCTTGGTTTAACTCCAAATAATGATGGAGAAGTGATTCGGTTGACCCTACCTCAACTTACAGCAGAAAGAAGGAAGGAATTGTCAAAAGTAGTGGCAAAACAGACCGAAGAAGGAAAGGTGGCATTGAGGAACATCAGAAGAGATGCTTTAAAAGCTCTCGACAAACTTGAGAAGGACAAAAAGCTCTCTGAAGATAATGTCAAAGACTTATCTAGTGATTTGCAGCCATCTTTTGTGGACATTTCACGCACCAATTTCTTGTTTCATGAGTGGTTGGGTTTTGATTTCAAAGGTTACAGTAGAAGATACATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

288

Amino Acids

31.94

Weight (kDa)

9.53

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	2 cut(s)	33, 348
AgeI	ACCGGT	1 cut(s)	106
AgsI	TTSAA	5 cut(s)	275, 361, 416, 442, 835
AluBI	AGCT	6 cut(s)	156, 248, 510, 540, 701, 730
AluI	AGCT	6 cut(s)	156, 248, 510, 540, 701, 730
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	184
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	2 cut(s)	263, 769
AsiGI	ACCGGT	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	104, 351
AvaII	GGWCC	2 cut(s)	104, 351
BanII	GRGCYC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	250, 781
BccI	CCATC	4 cut(s)	179, 319, 563, 781
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	759
BfmI	CTRYAG	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	2 cut(s)	264, 770
BlsI	GCNGC	2 cut(s)	265, 771
Bme18I	GGWCC	2 cut(s)	104, 351
BmgT120I	GGNCC	2 cut(s)	104, 351
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	3 cut(s)	301, 460, 679
BpiI	GAAGAC	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	447
BseGI	GGATG	2 cut(s)	190, 330
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	250, 781
BseYI	CCCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	530
BshTI	ACCGGT	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	176, 544
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	106
BssMI	GATC	2 cut(s)	176, 544
Bst4CI	ACNGT	5 cut(s)	136, 163, 256, 351, 845
Bst6I	CTCTTC	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	125, 385
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	190, 330
BstKTI	GATC	2 cut(s)	179, 547
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	176, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 235, 389, 435, 698
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	250, 781
BstV2I	GAAGAC	1 cut(s)	449
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	190, 330
Cac8I	GCNNGC	2 cut(s)	125, 385
CciI	TCATGA	1 cut(s)	811
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	104, 351
Csp6I	GTAC	2 cut(s)	32, 347
CspAI	ACCGGT	1 cut(s)	106
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	4 cut(s)	150, 193, 394, 812
CviQI	GTAC	2 cut(s)	32, 347
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	178, 546
DpnII	GATC	2 cut(s)	176, 544
DraI	TTTAAA	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
EciI	GGCGGA	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	104, 351
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	756
EcoICRI	GAGCTC	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	4 cut(s)	153, 196, 397, 815
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FatI	CATG	4 cut(s)	149, 192, 393, 811
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	264, 770
FokI	GGATG	2 cut(s)	197, 337
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	2 cut(s)	264, 770
FspBI	CTAG	1 cut(s)	759
GluI	GCNGC	2 cut(s)	264, 770
GsaI	CCCAGC	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	4 cut(s)	153, 196, 397, 815
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	2 cut(s)	89, 580
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	588, 784
Hpy188I	TCNGA	4 cut(s)	372, 544, 683, 736
Hpy188III	TCNNGA	6 cut(s)	86, 182, 223, 467, 704, 812
Hpy8I	GTNNAC	2 cut(s)	588, 784
HpyAV	CCTTC	7 cut(s)	315, 490, 520, 609, 613, 650, 712
HpyCH4III	ACNGT	5 cut(s)	136, 163, 256, 351, 845
HpyCH4V	TGCA	4 cut(s)	23, 238, 473, 769
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 235, 389, 435, 698
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	4 cut(s)	153, 196, 397, 815
Kzo9I	GATC	2 cut(s)	176, 544
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	2 cut(s)	250, 781
LweI	GCATC	3 cut(s)	301, 460, 679
MaeI	CTAG	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	839
MalI	GATC	2 cut(s)	178, 546
MboI	GATC	2 cut(s)	176, 544
MboII	GAAGA	7 cut(s)	31, 287, 454, 665, 696, 749, 861
MfeI	CAATTG	1 cut(s)	230
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	6 cut(s)	230, 355, 361, 456, 623, 799
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	9 cut(s)	53, 72, 83, 86, 95, 372, 403, 606, 666
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	4 cut(s)	138, 512, 554, 695
MspI	CCGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	5 cut(s)	153, 235, 389, 435, 698
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	176, 544
NlaIII	CATG	4 cut(s)	153, 196, 397, 815
NlaIV	GGNNCC	1 cut(s)	190
PagI	TCATGA	1 cut(s)	811
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	580
PinAI	ACCGGT	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	265, 771
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	104, 351
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	2 cut(s)	33, 348
RsaNI	GTAC	2 cut(s)	32, 347
SacI	GAGCTC	1 cut(s)	158
SaqAI	TTAA	4 cut(s)	138, 512, 554, 695
SatI	GCNGC	2 cut(s)	264, 770
Sau3AI	GATC	2 cut(s)	176, 544
Sau96I	GGNCC	2 cut(s)	104, 351
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	3 cut(s)	301, 460, 679
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	2 cut(s)	104, 351
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	6 cut(s)	230, 355, 361, 456, 623, 799
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	759
SstI	GAGCTC	1 cut(s)	158
TaaI	ACNGT	5 cut(s)	136, 163, 256, 351, 845
TaqI	TCGA	3 cut(s)	85, 339, 705
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	6 cut(s)	230, 355, 361, 456, 623, 799
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	4 cut(s)	138, 512, 554, 695
Tru9I	TTAA	4 cut(s)	138, 512, 554, 695
TseI	GCWGC	2 cut(s)	263, 769
TspDTI	ATGAA	2 cut(s)	209, 800
TspGWI	ACGGA	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	104, 351
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.