Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

21461620 .. 21464902

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21160.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTTTCTGAGATAAATATCTCAGCCCCCAAAAAGCTTCAATCCGAACAAAAGTCCTCGGCTTTCATGACGACCCACTGCTCCCCAGCAACCCCTGTACGCTTCGTCCTCCAGCCCAAGCAAAACCCTCCCAAAACCCTGCTTTCCATTCGAGATTCTTTTGGCGGAGGATCGGCTTGTAAGAAATGCCAGCCTAGAACTGTTAAGGTGTGCTCATGGAGCTCATCTGCTAGCTATGTGAGGTCAGAGGACAGCGCTGCGAAGTTTTCAGGCAATCCCATTGTTGTGAAGAAGCAATTGTTCCAAAAGAGAGCTGGAATTGTAAGGGCTGCTACTATTGAAGAAATAGAAGGGGAGAAGTCTTTGATAAAGAAAGATACTGAAGGAAGGATGGAAAAGACTCTTGAAACCGTACGATCCAATTTCAATTCTATTAGGACAGGGAGGGCAAGCCCGGCCATGCTGGATAAGATTGAGGTTGAATACTATGGAAGCCCAGTTGGCTTGAAGACCATTGCTAATATTAGTTCTCCTGATGCAAGTTCCTTCTTGGTTCAGCCATACGACAAATCCAGCTTAAAGGCTATAGAGAAGGCCATCGTTAGCTCTAATCTTGGTTTGACTCCAAATAATGATGGAGAAGTAATTCGATTGACTCTACCTCAACTTACGTCAGACAGAAGGAAGGAGTTGTCAAAAATTGTGGCAAAACAGACGGAAGAAGGAAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAACTCTTGAAAAACTTGAGAAGGGAAAAAAGCTCTCTGAAGATAATGTCAAGGACTTATCAAGTGACTTGCAGAAATTGACGGATGAGTATGTGAAGAAACTTGATGCCATATTCAAACAAAAAGAGAAGGAATTGCTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

304

Amino Acids

33.6

Weight (kDa)

9.62

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	178, 411
AcoI	YGGCCR	1 cut(s)	456
AcuI	CTGAAG	2 cut(s)	402, 822
AfaI	GTAC	2 cut(s)	99, 414
AfeI	AGCGCT	1 cut(s)	256
AgsI	TTSAA	8 cut(s)	41, 341, 407, 427, 482, 508, 773, 880
AluBI	AGCT	7 cut(s)	37, 222, 234, 314, 576, 606, 796
AluI	AGCT	7 cut(s)	37, 222, 234, 314, 576, 606, 796
Alw21I	GWGCWC	2 cut(s)	215, 224
AlwI	GGATC	2 cut(s)	178, 411
Aor51HI	AGCGCT	1 cut(s)	256
AoxI	GGCC	2 cut(s)	456, 594
ApeKI	GCWGC	2 cut(s)	257, 329
Asp700I	GAANNNNTTC	1 cut(s)	645
AspLEI	GCGC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	455
AsuNHI	GCTAGC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	2 cut(s)	215, 224
BbvI	GCAGC	2 cut(s)	244, 316
BccI	CCATC	3 cut(s)	385, 605, 629
BcnI	CCSGG	1 cut(s)	455
BfaI	CTAG	2 cut(s)	195, 231
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	501
BisI	GCNGC	2 cut(s)	258, 330
BlsI	GCNGC	2 cut(s)	259, 331
Bme1390I	CCNGG	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	455
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	3 cut(s)	526, 745, 859
BmtI	GCTAGC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	396, 760, 853
BseJI	GATNNNNATC	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	244, 316
BseYI	CCCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	458, 596
BsiHKAI	GWGCWC	2 cut(s)	215, 224
BsiSI	CCGG	1 cut(s)	455
BsiWI	CGTACG	1 cut(s)	412
BsnI	GGCC	2 cut(s)	458, 596
Bsp1286I	GDGCHC	2 cut(s)	215, 224
Bsp143I	GATC	2 cut(s)	170, 416
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	458, 596
BspCNI	CTCAG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	66
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	178, 411
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	170, 416
Bst4CI	ACNGT	2 cut(s)	202, 412
BstC8I	GCNNGC	3 cut(s)	191, 232, 451
BstDEI	CTNAG	2 cut(s)	9, 22
BstF5I	GGATG	3 cut(s)	396, 760, 853
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	173, 419
BstMBI	GATC	2 cut(s)	170, 416
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 455, 501
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	244, 316
BstV2I	GAAGAC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	458, 596
BtsCI	GGATG	3 cut(s)	396, 760, 853
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	191, 232, 451
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	98, 413
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	3 cut(s)	67, 216, 460
CviQI	GTAC	2 cut(s)	98, 413
DdeI	CTNAG	2 cut(s)	9, 22
DpnI	GATC	2 cut(s)	172, 418
DpnII	GATC	2 cut(s)	170, 416
DraI	TTTAAA	1 cut(s)	762
EaeI	YGGCCR	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	224
Eco47III	AGCGCT	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	402, 822
EcoICRI	GAGCTC	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	224
FaeI	CATG	3 cut(s)	70, 219, 463
FalI	AAGNNNNNCTT	2 cut(s)	742, 774
FatI	CATG	3 cut(s)	66, 215, 459
Fnu4HI	GCNGC	2 cut(s)	258, 330
FokI	GGATG	3 cut(s)	403, 767, 860
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	258, 330
FspBI	CTAG	2 cut(s)	195, 231
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	2 cut(s)	258, 330
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	458, 596
HapII	CCGG	1 cut(s)	455
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	70, 219, 463
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	4 cut(s)	155, 400, 622, 655
HpaII	CCGG	1 cut(s)	455
Hpy188I	TCNGA	5 cut(s)	10, 46, 247, 676, 802
Hpy188III	TCNNGA	5 cut(s)	67, 152, 404, 533, 770
HpyCH4III	ACNGT	2 cut(s)	202, 412
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	2 cut(s)	539, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 455, 501
HpyF3I	CTNAG	2 cut(s)	9, 22
HpySE526I	ACGT	1 cut(s)	671
Hsp92II	CATG	3 cut(s)	70, 219, 463
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	170, 416
LmnI	GCTCC	2 cut(s)	86, 219
Lsp1109I	GCAGC	2 cut(s)	244, 316
LweI	GCATC	3 cut(s)	526, 745, 859
MaeI	CTAG	2 cut(s)	195, 231
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	2 cut(s)	172, 418
MboI	GATC	2 cut(s)	170, 416
MboII	GAAGA	6 cut(s)	301, 353, 520, 731, 815, 871
MfeI	CAATTG	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	215, 224
MluCI	AATT	8 cut(s)	296, 318, 421, 427, 645, 699, 839, 896
MlyI	GAGTC	3 cut(s)	394, 616, 649
MroXI	GAANNNNTTC	1 cut(s)	645
MseI	TTAA	3 cut(s)	204, 578, 761
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	219, 455, 501
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	2 cut(s)	170, 416
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	3 cut(s)	70, 219, 463
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	827
PagI	TCATGA	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	155
Pfl23II	CGTACG	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	259, 331
PleI	GAGTC	3 cut(s)	394, 616, 649
PpsI	GAGTC	3 cut(s)	394, 616, 649
Psp124BI	GAGCTC	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	85
PspLI	CGTACG	1 cut(s)	412
RsaI	GTAC	2 cut(s)	99, 414
RsaNI	GTAC	2 cut(s)	98, 413
RseI	CAYNNNNRTG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	204, 578, 761
SatI	GCNGC	2 cut(s)	258, 330
Sau3AI	GATC	2 cut(s)	170, 416
SchI	GAGTC	3 cut(s)	394, 616, 649
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	2 cut(s)	215, 224
SfaNI	GCATC	3 cut(s)	526, 745, 859
SfcI	CTRYAG	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	8 cut(s)	296, 318, 421, 427, 645, 699, 839, 896
SsiI	CCGC	1 cut(s)	165
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	2 cut(s)	195, 231
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	202, 412
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	2 cut(s)	151, 649
TasI	AATT	8 cut(s)	296, 318, 421, 427, 645, 699, 839, 896
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	204, 578, 761
Tru9I	TTAA	3 cut(s)	204, 578, 761
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	827
TseI	GCWGC	2 cut(s)	257, 329
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	1 cut(s)	55
TspGWI	ACGGA	2 cut(s)	731, 860
TspRI	CASTG	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	2 cut(s)	195, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.