Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

34675665 .. 34678694

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCTCACTAACCCAACATTCAATAGGAGCTTATTGCCTCAGATCAAAGAAAAGCTCCATCAACATCAACACAACTACTGCTACTGCAGCAGTCAATGCGAAAAGTCATAAGGCCAGTAGTACTTCTTTTCAGTTACCATTGACCATCGAAAAGACGGCTTCGATTACGATTTCAAATGTTAATGGAAAAAAACGCAAAGATGAACAATGGAGAGTGTTCGGAAGTGATGATGATGGATCGTGTGGGATAGCACCTATGCCAGCACCTCCTTCTGCCGGGGAATTGGCTAAAGATTTCTACAATGCCATCAATTCCAAGGACATAAGCAAATTGGATCCACTTCTATCAGATAACTGCCAGTATCAGGATCTTGTGTTTTACGTTCCCTTTGAAGGAAAAAAACAGGGTGTTATCCCCTTCTTTGCCAAGATGATGGATGCAATGGGACCCAACATTGTTTTCGTCATTGATAATGTCACGGAAGGCGCAAAATTGACTTCCAGTGTAATTTGGCATCTAGAGTGGAAACATAAAGTTATACCCTTCGCCACGGGCTGCACATTCTTCGAATACGAAGAATATGAAAATGGACGTCTCTTGCTTAGGAAAGCAACCGGCATGGCAGAAATCCCATTCAAACCTGGTGATTTCGTATTGAAAGTTTTAAAGTCAGCAAGTACCTTCTTCGATCTCTACCCAATGGCAGCAGAAGCTTTATTGAAATCTCATGAGGATGAACCGCACGAAGGATTATCTTCATTACTAGATAAGCTTTTCGGCAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

263

Amino Acids

29.03

Weight (kDa)

7.01

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SnoaL_2	PF12680	98 - 193	5.3e-06	SnoaL-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	598
AciI	CCGC	1 cut(s)	743
AclWI	GGATC	4 cut(s)	247, 332, 345, 378
AcyI	GRCGYC	1 cut(s)	595
AfaI	GTAC	2 cut(s)	124, 682
AfeI	AGCGCT	1 cut(s)	788
AfiI	CCNNNNNNNGG	4 cut(s)	278, 367, 395, 749
AgsI	TTSAA	6 cut(s)	24, 177, 395, 640, 661, 724
AjnI	CCWGG	1 cut(s)	643
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	4 cut(s)	32, 57, 716, 775
AluI	AGCT	4 cut(s)	32, 57, 716, 775
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	4 cut(s)	247, 332, 345, 378
Aor51HI	AGCGCT	1 cut(s)	788
AoxI	GGCC	2 cut(s)	3, 114
ApeKI	GCWGC	3 cut(s)	89, 558, 707
AspLEI	GCGC	2 cut(s)	491, 789
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	659
AsuII	TTCGAA	1 cut(s)	570
AvaII	GGWCC	1 cut(s)	449
BamHI	GGATCC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	101, 545, 719
BccI	CCATC	5 cut(s)	68, 155, 230, 317, 430
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciT130I	CCWGG	1 cut(s)	645
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	2 cut(s)	521, 767
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	790
BisI	GCNGC	3 cut(s)	90, 559, 708
BlsI	GCNGC	3 cut(s)	91, 560, 709
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	280, 645
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	3 cut(s)	339, 450, 451
BmrFI	CCNGG	2 cut(s)	280, 645
BmsI	GCATC	2 cut(s)	430, 526
Bpu10I	CCTNAGC	1 cut(s)	605
Bpu14I	TTCGAA	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	595
BsaJI	CCNNGG	3 cut(s)	279, 318, 552
Bsc4I	CCNNNNNNNGG	4 cut(s)	278, 367, 395, 749
Bse118I	RCCGGY	1 cut(s)	617
Bse1I	ACTGG	3 cut(s)	117, 361, 504
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	3 cut(s)	279, 318, 552
BseGI	GGATG	2 cut(s)	445, 742
BseLI	CCNNNNNNNGG	4 cut(s)	278, 367, 395, 749
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	3 cut(s)	117, 361, 504
BseXI	GCAGC	3 cut(s)	101, 545, 719
BsgI	GTGCAG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	5, 116
BsiSI	CCGG	2 cut(s)	279, 618
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	4 cut(s)	278, 367, 395, 749
BsmAI	GTCTC	1 cut(s)	602
BsmBI	CGTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	5, 116
Bsp119I	TTCGAA	1 cut(s)	570
Bsp143I	GATC	5 cut(s)	44, 239, 337, 370, 691
BspACI	CCGC	1 cut(s)	743
BspANI	GGCC	2 cut(s)	5, 116
BspCNI	CTCAG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	3 cut(s)	339, 450, 451
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	4 cut(s)	247, 332, 345, 378
BspT104I	TTCGAA	1 cut(s)	570
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	617
BsrI	ACTGG	3 cut(s)	117, 361, 504
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	3 cut(s)	279, 318, 552
BssMI	GATC	5 cut(s)	44, 239, 337, 370, 691
BssNI	GRCGYC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	645
BstACI	GRCGYC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	264, 785
BstDEI	CTNAG	2 cut(s)	41, 605
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	445, 742
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	2 cut(s)	491, 789
BstKTI	GATC	5 cut(s)	47, 242, 340, 373, 694
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	5 cut(s)	44, 239, 337, 370, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 713
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	2 cut(s)	278, 643
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	101, 545, 719
BstX2I	RGATCY	2 cut(s)	337, 370
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	2 cut(s)	337, 370
BsuRI	GGCC	2 cut(s)	5, 116
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	445, 742
BtsIMutI	CAGTG	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	264, 785
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	2 cut(s)	491, 789
Cfr10I	RCCGGY	1 cut(s)	617
Cfr13I	GGNCC	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	123, 681
CviAII	CATG	2 cut(s)	622, 731
CviJI	RGCY	9 cut(s)	5, 32, 57, 116, 161, 290, 558, 716, 775
CviKI_1	RGCY	9 cut(s)	5, 32, 57, 116, 161, 290, 558, 716, 775
CviQI	GTAC	2 cut(s)	123, 681
DdeI	CTNAG	2 cut(s)	41, 605
DpnI	GATC	5 cut(s)	46, 241, 339, 372, 693
DpnII	GATC	5 cut(s)	44, 239, 337, 370, 691
DraI	TTTAAA	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	449
Eco47III	AGCGCT	1 cut(s)	788
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	2 cut(s)	625, 734
FaiI	YATR	8 cut(s)	111, 260, 326, 534, 542, 585, 623, 732
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	2 cut(s)	621, 730
Fnu4HI	GCNGC	3 cut(s)	90, 559, 708
FokI	GGATG	2 cut(s)	452, 749
Fsp4HI	GCNGC	3 cut(s)	90, 559, 708
FspBI	CTAG	2 cut(s)	521, 767
GlaI	GCGC	2 cut(s)	490, 788
GluI	GCNGC	3 cut(s)	90, 559, 708
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	2 cut(s)	5, 116
HapII	CCGG	2 cut(s)	279, 618
HhaI	GCGC	2 cut(s)	491, 789
Hin1I	GRCGYC	1 cut(s)	595
Hin1II	CATG	2 cut(s)	625, 734
Hin6I	GCGC	2 cut(s)	489, 787
HinP1I	GCGC	2 cut(s)	489, 787
HindIII	AAGCTT	2 cut(s)	714, 773
HpaII	CCGG	2 cut(s)	279, 618
HphI	GGTGA	1 cut(s)	659
Hpy188I	TCNGA	3 cut(s)	44, 224, 352
Hpy188III	TCNNGA	3 cut(s)	368, 521, 731
HpyAV	CCTTC	7 cut(s)	282, 389, 430, 479, 556, 694, 743
HpyCH4IV	ACGT	2 cut(s)	384, 595
HpyCH4V	TGCA	3 cut(s)	89, 443, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 713
HpyF3I	CTNAG	2 cut(s)	41, 605
HpySE526I	ACGT	2 cut(s)	384, 595
Hsp92I	GRCGYC	1 cut(s)	595
Hsp92II	CATG	2 cut(s)	625, 734
HspAI	GCGC	2 cut(s)	489, 787
KflI	GGGWCCC	1 cut(s)	449
Kzo9I	GATC	5 cut(s)	44, 239, 337, 370, 691
LmnI	GCTCC	2 cut(s)	29, 62
Lsp1109I	GCAGC	3 cut(s)	101, 545, 719
LweI	GCATC	2 cut(s)	430, 526
MabI	ACCWGGT	1 cut(s)	643
MaeI	CTAG	2 cut(s)	521, 767
MaeII	ACGT	2 cut(s)	384, 595
MaeIII	GTNAC	2 cut(s)	135, 478
MalI	GATC	5 cut(s)	46, 241, 339, 372, 693
MboI	GATC	5 cut(s)	44, 239, 337, 370, 691
MboII	GAAGA	4 cut(s)	559, 590, 679, 750
MflI	RGATCY	2 cut(s)	337, 370
MluCI	AATT	5 cut(s)	284, 313, 332, 494, 510
MnlI	CCTC	4 cut(s)	16, 50, 279, 727
MseI	TTAA	2 cut(s)	183, 668
MslI	CAYNNNNRTG	1 cut(s)	735
MspI	CCGG	2 cut(s)	279, 618
MspR9I	CCNGG	2 cut(s)	280, 645
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 713
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	5 cut(s)	44, 239, 337, 370, 691
NlaIII	CATG	2 cut(s)	625, 734
NlaIV	GGNNCC	3 cut(s)	339, 450, 451
NmuCI	GTSAC	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	570
PagI	TCATGA	1 cut(s)	730
PkrI	GCNGC	3 cut(s)	91, 560, 709
PpuMI	RGGWCCY	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	3 cut(s)	339, 450, 451
PspPI	GGNCC	1 cut(s)	449
PspPPI	RGGWCCY	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	337, 370
RsaI	GTAC	2 cut(s)	124, 682
RsaNI	GTAC	2 cut(s)	123, 681
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	183, 668
SatI	GCNGC	3 cut(s)	90, 559, 708
Sau3AI	GATC	5 cut(s)	44, 239, 337, 370, 691
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	280, 645
SexAI	ACCWGGT	1 cut(s)	643
SfaNI	GCATC	2 cut(s)	430, 526
SfcI	CTRYAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	570
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	735
Sse9I	AATT	5 cut(s)	284, 313, 332, 494, 510
SsiI	CCGC	1 cut(s)	743
SspMI	CTAG	2 cut(s)	521, 767
StyD4I	CCNGG	2 cut(s)	278, 643
StyI	CCWWGG	1 cut(s)	318
TaiI	ACGT	2 cut(s)	387, 598
TaqI	TCGA	4 cut(s)	150, 164, 570, 690
TasI	AATT	5 cut(s)	284, 313, 332, 494, 510
TatI	WGTACW	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	183, 668
Tru9I	TTAA	2 cut(s)	183, 668
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	89, 558, 707
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	4 cut(s)	219, 600, 750, 753
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	449
XbaI	TCTAGA	1 cut(s)	520
XspI	CTAG	2 cut(s)	521, 767
ZraI	GACGTC	1 cut(s)	596
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.