Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

46284555 .. 46286964

Gene Structure 2410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009086

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCATGGTCCATCCTCCAACCAAAGCTAAACCCTCCCAAAGCCCTCCTCTCCATTCAAGATTCTTATGGCGGTGCACGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCTTCGAGCTCAGCTGCTAGTTATGTGACACCTCCTGGTGGCGTTGCTAAGTTTTCTGGCAATCCCATTGTCGTGAAGGAAGCTGGAACTGTAAGGGGTGCTACTATTGAAGAAATAGAAGCGGAGAAGTCTGTGATTGAAAAAGATGCTGTAAGTTTTTCTATATGGACAGGGAGGGCAAGCCCAGCCATACTGGGCAAGATTGAGGTTGACTATTATGGAAGTCCAGTTGGCTTGAAGAGCCTTGCTCAAATTAGTTCTCCTGATGGAACTTCCCTATTGATTTCGCCATACGACAAATCCAGTCTATTGAGAAGGCCATCGTTGCCTCTGATCTTGGCATGGACTCCAAATAATGATGGACAGGTGATACGGTTGACCCTGCGTCAACTCACATCAGATAGACGGAAGCCATTGACAAAAGTTGTATCAAAACAAGCTGAAGAAGGGAAGAATAAATACCATCTAAAATTAAAATGGACAGATGAGTATGTGAAGAAACTTGATAACATATCCAAACAGAAAGAGAAGGTAACATATCCAAACCATGTTGTTTATACCCACTTCATGAAAAGACCTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

245

Amino Acids

26.9

Weight (kDa)

9.66

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	104 - 202	3.4e-23	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 269
AcuI	CTGAAG	1 cut(s)	609
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	86, 257, 287, 385, 731
AhdI	GACNNNNNGTC	1 cut(s)	531
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	5 cut(s)	55, 156, 161, 230, 587
AluI	AGCT	5 cut(s)	55, 156, 161, 230, 587
Alw21I	GWGCWC	3 cut(s)	106, 149, 158
Alw44I	GTGCAC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	464
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	158
BarI	GAAGNNNNNNTAC	2 cut(s)	590, 622
Bbv12I	GWGCWC	3 cut(s)	106, 149, 158
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	5 cut(s)	47, 407, 475, 500, 618
BciT130I	CCWGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	36
BmeRI	GACNNNNNGTC	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	2 cut(s)	123, 350
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	2 cut(s)	123, 350
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
Bpu1102I	GCTNAGC	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	4 cut(s)	129, 345, 374, 450
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	4 cut(s)	129, 345, 374, 450
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	331
BshFI	GGCC	1 cut(s)	466
BsiHKAI	GWGCWC	3 cut(s)	106, 149, 158
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	466
Bsp1286I	GDGCHC	3 cut(s)	106, 149, 158
Bsp143I	GATC	1 cut(s)	480
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	99, 269
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	714
BspQI	GCTCTTC	2 cut(s)	154, 380
BsrI	ACTGG	4 cut(s)	129, 345, 374, 450
BssMI	GATC	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	238, 522
Bst6I	CTCTTC	2 cut(s)	154, 380
BstC8I	GCNNGC	2 cut(s)	125, 328
BstDEI	CTNAG	2 cut(s)	157, 195
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 153, 332, 387, 472
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	125, 328
CciI	TCATGA	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	521
CviAII	CATG	4 cut(s)	33, 489, 695, 715
DdeI	CTNAG	2 cut(s)	157, 195
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
DriI	GACNNNNNGTC	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	154, 380
Eam1105I	GACNNNNNGTC	1 cut(s)	531
EarI	CTCTTC	2 cut(s)	154, 380
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	4 cut(s)	36, 492, 698, 718
FatI	CATG	4 cut(s)	32, 488, 694, 714
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	466
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	36, 492, 698, 718
HincII	GTYRAC	3 cut(s)	358, 525, 536
HindII	GTYRAC	3 cut(s)	358, 525, 536
HinfI	GANTC	3 cut(s)	25, 89, 493
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	4 cut(s)	104, 358, 525, 536
Hpy188I	TCNGA	2 cut(s)	480, 547
Hpy188III	TCNNGA	4 cut(s)	86, 220, 410, 715
Hpy8I	GTNNAC	4 cut(s)	104, 358, 525, 536
HpyAV	CCTTC	4 cut(s)	217, 456, 587, 670
HpyCH4III	ACNGT	2 cut(s)	238, 522
HpyCH4V	TGCA	2 cut(s)	32, 104
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 153, 332, 387, 472
HpyF3I	CTNAG	2 cut(s)	157, 195
Hsp92II	CATG	4 cut(s)	36, 492, 698, 718
Kzo9I	GATC	1 cut(s)	480
LguI	GCTCTTC	2 cut(s)	154, 380
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	172, 679
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	7 cut(s)	127, 141, 269, 397, 602, 610, 655
MhlI	GDGCHC	3 cut(s)	106, 149, 158
MluCI	AATT	2 cut(s)	399, 617
MlyI	GAGTC	2 cut(s)	19, 487
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	8 cut(s)	53, 72, 83, 86, 189, 315, 346, 486
MseI	TTAA	2 cut(s)	138, 620
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	5 cut(s)	29, 153, 332, 387, 472
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	4 cut(s)	36, 492, 698, 718
NmuCI	GTSAC	1 cut(s)	172
PagI	TCATGA	1 cut(s)	714
PciSI	GCTCTTC	2 cut(s)	154, 380
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	19, 487
PpsI	GAGTC	2 cut(s)	19, 487
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	158
SapI	GCTCTTC	2 cut(s)	154, 380
SaqAI	TTAA	2 cut(s)	138, 620
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	2 cut(s)	19, 487
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	106, 149, 158
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	399, 617
SsiI	CCGC	2 cut(s)	99, 269
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	238, 522
TaqI	TCGA	1 cut(s)	152
TasI	AATT	2 cut(s)	399, 617
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	138, 620
Tru9I	TTAA	2 cut(s)	138, 620
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	703, 731
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	36
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.