Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005869

Physical Location & Seq

Genomic Coordinates Forward (+)

493546 .. 494885

Gene Structure 1340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGATATCAGTAGCAGCTTCGTCCTCTATGGCCGTGATGGTTCCACGTGTTCCCGCCGTATCCACCCGTTGCTCCGCCGTCCCTTATCTTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTTGTTTCAGGGAATGGATTGCAAAAAGTTGAATTGTTGAAGACAAGAGCTTCTTCAGAAGAGACCTCGTCCATTGATACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAATCTACTGTACTTATATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTGTTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTTATGGAACTTGTCGGTCTCGGGTACACTGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTGAGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

164

Amino Acids

17.7

Weight (kDa)

9.21

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	79 - 162	1.8e-31	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01150 AT4G01150
fragaria_vesca	FvH4_7g15760 FvH4_7g15760 FvH4_7g15760 FvH4_7g15760
malus_domestica	MD01G1074400.v1.1 MD07G1143300.v1.1
prunus_persica	Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1
pyrus_communis	pycom01g10350 pycom07g14200
rosa_chinensis	RchiOBHm_Chr1g0358531 RchiOBHm_Chr5g0044891
rosa_laevigata	RLG00000027954 RLG00000034304
rosa_multiflora	Rmu_sc0001609.1_g000005 Rmu_sc0020854.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297830
rosa_rugosa	Rorug01G0262400
rosa_samantha	Rh1AG277100 Rh1BG243400 Rh1CG260600 Rh1DG271700
rosa_wichuraiana	Rw1G024630 Rw5G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	2 cut(s)	57, 78
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	2 cut(s)	33, 109
AcuI	CTGAAG	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	50
AfaI	GTAC	2 cut(s)	279, 392
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	136, 170, 178, 241, 427, 461, 469
AluBI	AGCT	3 cut(s)	20, 139, 188
AluI	AGCT	3 cut(s)	20, 139, 188
Alw26I	GTCTC	2 cut(s)	194, 389
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	33, 109
ApeKI	GCWGC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	335
BbrPI	CACGTG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	185
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	4 cut(s)	34, 248, 347, 393
BceAI	ACGGC	3 cut(s)	20, 44, 65
BciVI	GTATCC	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	194, 389
BfmI	CTRYAG	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	386
BmiI	GGNNCC	3 cut(s)	45, 298, 337
BpiI	GAAGAC	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	50
BsaI	GGTCTC	2 cut(s)	194, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bse1I	ACTGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	259, 404
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	3 cut(s)	87, 306, 309
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	2 cut(s)	35, 111
BshNI	GGYRCC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	194, 389
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	35, 111
Bso31I	GGTCTC	2 cut(s)	194, 389
BsoBI	CYCGRG	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	113, 477
BspACI	CCGC	2 cut(s)	57, 78
BspANI	GGCC	2 cut(s)	35, 111
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	45, 298, 337
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	2 cut(s)	194, 389
BsrI	ACTGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	113, 477
Bst4CI	ACNGT	2 cut(s)	127, 277
Bst6I	CTCTTC	2 cut(s)	192, 428
BstBAI	YACGTR	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	259, 404
BstKTI	GATC	2 cut(s)	116, 480
BstMAI	GTCTC	2 cut(s)	194, 389
BstMBI	GATC	2 cut(s)	113, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 305
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	35, 111
BtsCI	GGATG	2 cut(s)	259, 404
BtsIMutI	CAGTG	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	278, 391
CviJI	RGCY	7 cut(s)	20, 35, 111, 139, 188, 299, 449
CviKI_1	RGCY	7 cut(s)	20, 35, 111, 139, 188, 299, 449
CviQI	GTAC	2 cut(s)	278, 391
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	2 cut(s)	115, 479
DpnII	GATC	2 cut(s)	113, 477
EaeI	YGGCCR	2 cut(s)	33, 109
Eam1104I	CTCTTC	2 cut(s)	192, 428
EarI	CTCTTC	2 cut(s)	192, 428
EciI	GGCGGA	1 cut(s)	67
Eco31I	GGTCTC	2 cut(s)	194, 389
Eco32I	GATATC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	386
EcoRV	GATATC	1 cut(s)	9
FaiI	YATR	5 cut(s)	32, 284, 286, 288, 371
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FaqI	GGGAC	1 cut(s)	68
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	266, 411
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	35, 111
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	461
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	393, 409
Hpy188I	TCNGA	2 cut(s)	196, 363
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	2 cut(s)	393, 409
HpyAV	CCTTC	2 cut(s)	235, 428
HpyCH4III	ACNGT	2 cut(s)	127, 277
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 305
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	113, 477
LmnI	GCTCC	3 cut(s)	80, 107, 296
LpnPI	CCDG	3 cut(s)	132, 381, 468
Lsp1109I	GCAGC	1 cut(s)	29
MaeII	ACGT	1 cut(s)	49
MalI	GATC	2 cut(s)	115, 479
MboI	GATC	2 cut(s)	113, 477
MboII	GAAGA	9 cut(s)	83, 183, 190, 209, 312, 415, 481, 484, 487
MluCI	AATT	2 cut(s)	170, 443
MnlI	CCTC	9 cut(s)	37, 105, 108, 127, 214, 284, 287, 363, 445
MwoI	GCNNNNNNNGC	2 cut(s)	108, 305
NdeII	GATC	2 cut(s)	113, 477
NlaIV	GGNNCC	3 cut(s)	45, 298, 337
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	461
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	19
PmaCI	CACGTG	1 cut(s)	50
PmlI	CACGTG	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	45, 298, 337
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	2 cut(s)	279, 392
RsaNI	GTAC	2 cut(s)	278, 391
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	113, 477
SetI	ASST	6 cut(s)	22, 52, 141, 190, 206, 420
SfcI	CTRYAG	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	170, 443
SsiI	CCGC	2 cut(s)	57, 78
TaaI	ACNGT	2 cut(s)	127, 277
TaiI	ACGT	1 cut(s)	52
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	2 cut(s)	170, 443
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	461
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	400
Tth111I	GACNNNGTC	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.