RLG00000027954

Protein CURVATURE THYLAKOID 1A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005869
Physical Location & Seq
Forward (+)
17110923 .. 17112967
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027954

Sequence Viewer

Length: 489 bp
ATGGCAGCGACAGCCTCCTCCATGGCGGCCACCGCCGTGTTTGTGCCACGTGTCCCCTCCACAACCACCCGCTGCTCTGCCTTGCCTTACGTCCCACCTCGTATCTCCTCCTCCCCGTCTTGCTTTGCCATTAGAGCTTCCTCAGAGTCCCGGAGGCGTTCCCTTCAGGTCAGAGCATCATCTTCTGAAGAGACATCCACTTCCATTGACACTGGAGAACTAATATCAGACTTGAAGGAGAAGTGGGATGCAGTTGAAAACAAGTCAACAGTACTTGTGTATGGAGGTGGGGCAATCGTTGCTTTGTGGCTGTCTTCAATAGTTGTTGGTGCCGTCAATTCAGTGCCACTGCTTCCAAAGGTCCTGGAGTTGGTAGGGCTAGGATATACTGGATGGTTCGTCTACCGTTACCTGCTCTTCAAGTCGAGCAGAAAAGAACTAGCTACAGACATTGATGCATTGAAGAAGAAGATCACTGGAACCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAAD

Protein Analysis

163

Amino Acids

17.39

Weight (kDa)

9.36

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 77 - 160 3.3e-32 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 402
AciI CCGC 3 cut(s) 26, 33, 70
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 2 cut(s) 149, 207
AcvI CACGTG 1 cut(s) 50
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 5 cut(s) 235, 257, 318, 421, 463
AjnI CCWGG 1 cut(s) 363
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 2 cut(s) 137, 443
AluI AGCT 2 cut(s) 137, 443
Alw26I GTCTC 1 cut(s) 185
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 5, 72
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 1 cut(s) 151
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 329
BbrPI CACGTG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 17, 59
BccI CCATC 1 cut(s) 387
BceAI ACGGC 2 cut(s) 20, 317
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 380, 440
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 3 cut(s) 6, 27, 73
BlsI GCNGC 3 cut(s) 7, 28, 74
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 2 cut(s) 151, 365
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 2 cut(s) 331, 481
BmrFI CCNGG 2 cut(s) 151, 365
BmsI GCATC 3 cut(s) 185, 238, 445
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 2 cut(s) 234, 386
BpuMI CCSGG 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 3 cut(s) 217, 394, 481
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 3 cut(s) 194, 253, 398
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 3 cut(s) 217, 394, 481
BseRI GAGGAG 3 cut(s) 7, 97, 100
BseXI GCAGC 2 cut(s) 17, 59
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 151
BslFI GGGAC 3 cut(s) 38, 77, 133
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 3 cut(s) 38, 77, 133
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 471
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 26, 33, 70
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 331, 481
BspMI ACCTGC 1 cut(s) 420
BspQI GCTCTTC 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 329
BsrI ACTGG 3 cut(s) 217, 394, 481
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 471
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 271, 407
Bst6I CTCTTC 2 cut(s) 183, 422
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 194, 253, 398
BstKTI GATC 1 cut(s) 474
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 1 cut(s) 471
BstMWI GCNNNNNNNGC 4 cut(s) 11, 32, 134, 299
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 149, 363
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 17, 59
BstV2I GAAGAC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 3 cut(s) 194, 253, 398
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 4 cut(s) 210, 347, 348, 474
BveI ACCTGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 14, 29, 137, 310, 379, 443
CviKI_1 RGCY 6 cut(s) 14, 29, 137, 310, 379, 443
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 142
DpnI GATC 1 cut(s) 473
DpnII GATC 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 183, 422
EarI CTCTTC 2 cut(s) 183, 422
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 149, 207
Eco72I CACGTG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 282, 387
FaqI GGGAC 3 cut(s) 38, 77, 133
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 6, 27, 73
FokI GGATG 3 cut(s) 181, 260, 405
Fsp4HI GCNGC 3 cut(s) 6, 27, 73
FspBI CTAG 2 cut(s) 380, 440
GluI GCNGC 3 cut(s) 6, 27, 73
GsuI CTGGAG 2 cut(s) 234, 386
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 151
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 267, 403
Hpy188I TCNGA 4 cut(s) 145, 173, 187, 229
Hpy8I GTNNAC 2 cut(s) 267, 403
HpyAV CCTTC 2 cut(s) 173, 229
HpyCH4III ACNGT 2 cut(s) 271, 407
HpyCH4IV ACGT 2 cut(s) 49, 90
HpyCH4V TGCA 2 cut(s) 251, 458
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 32, 134, 299
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 2 cut(s) 49, 90
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 1 cut(s) 471
LguI GCTCTTC 1 cut(s) 422
LpnPI CCDG 8 cut(s) 152, 164, 198, 350, 375, 377, 425, 462
Lsp1109I GCAGC 2 cut(s) 17, 59
LweI GCATC 3 cut(s) 185, 238, 445
MaeI CTAG 2 cut(s) 380, 440
MaeII ACGT 2 cut(s) 49, 90
MaeIII GTNAC 1 cut(s) 407
MalI GATC 1 cut(s) 473
MboI GATC 1 cut(s) 471
MboII GAAGA 7 cut(s) 174, 200, 306, 409, 475, 478, 481
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 9 cut(s) 25, 28, 67, 108, 118, 121, 147, 151, 278
Mph1103I ATGCAT 1 cut(s) 460
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 151, 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 4 cut(s) 11, 32, 134, 299
NciI CCSGG 1 cut(s) 151
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 471
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 331, 481
NsiI ATGCAT 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 422
PfoI TCCNGGA 2 cut(s) 149, 363
PkrI GCNGC 3 cut(s) 7, 28, 74
PleI GAGTC 1 cut(s) 154
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 363
PspCI CACGTG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 331, 481
PspPI GGNCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 422
SatI GCNGC 3 cut(s) 6, 27, 73
Sau3AI GATC 1 cut(s) 471
Sau96I GGNCC 1 cut(s) 361
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 151, 365
SetI ASST 9 cut(s) 52, 93, 100, 139, 171, 289, 363, 414, 445
SfaNI GCATC 3 cut(s) 185, 238, 445
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 26, 33, 70
SspMI CTAG 2 cut(s) 380, 440
StyD4I CCNGG 2 cut(s) 149, 363
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 271, 407
TaiI ACGT 2 cut(s) 52, 93
TaqI TCGA 1 cut(s) 425
TasI AATT 1 cut(s) 337
TatI WGTACW 1 cut(s) 271
TauI GCSGC 1 cut(s) 29
TscAI CASTG 4 cut(s) 217, 348, 354, 481
TseI GCWGC 2 cut(s) 5, 72
TspRI CASTG 4 cut(s) 217, 348, 354, 481
VpaK11BI GGWCC 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 2 cut(s) 380, 440
ZrmI AGTACT 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.