Rorug01G0262400

Protein CURVATURE THYLAKOID 1A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005869
Physical Location & Seq
Reverse (-)
37226086 .. 37226968
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0262400.1

Sequence Viewer

Length: 648 bp
ATGGCAGACCCAGGACTCCACCCAGAGACTCCCATTCACCACAAAACCCAACCCCTCAAGCAAATCGCCATAGACTACACCCCAGACGCCTGCACACACTGTGCCGACTCCAACACCATCACTGTCACCTTCGACCACCGCGGCGGCGCAAGGTGGCGCACCCCCACCCGGTTCCTCTACGGCACCTTCAGCTCCCTCATCCAGTGCGCACGTGGCAACACCAGCGGCCTCAACTTCAACCTCTACCTCTCCTCCCTAGAAGGCGACAAGTCCCAGGACGAGATCGACTTCGAGTTTCTTGGTAAGGACATGACCATTGTCCAGACCAACTATTACACTGAAGGCACTGGAAACAAAGAAGAGATCCATGACCTAGGTTTCAACTGTTCCGAAGGGTTTCATGAGTATGTGATCAAGTGGAGTAAGGATCTGATCGAGTGGTTCATAGATGGGAAAATGGTGAGGAGGGTTGAGAGAAAAGAGGGTGAGGGTTTTCCGAATAAGCCTATGTATTTGTATTCTTCAGTGTGGGATGCTAGCTATATTGACGAGGGGAGGTGGACTGGGAAGTACGTTGGGTGCGATGTGCCTTATGTTTGTGTGTATAAGGATATTCATGTCCCTGCTGAGAGTGCTGTGGAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAAD

Protein Analysis

215

Amino Acids

24.49

Weight (kDa)

5.13

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 29 - 183 1.1e-41 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 182
AccII CGCG 1 cut(s) 141
AciI CCGC 4 cut(s) 139, 141, 144, 225
AclWI GGATC 2 cut(s) 358, 435
AcuI CTGAAG 3 cut(s) 172, 360, 507
AcvI CACGTG 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 238, 382
AjnI CCWGG 2 cut(s) 10, 273
AluBI AGCT 2 cut(s) 192, 540
AluI AGCT 2 cut(s) 192, 540
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 358, 435
AoxI GGCC 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 396
AspA2I CCTAGG 1 cut(s) 373
AspLEI GCGC 3 cut(s) 149, 159, 209
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 4 cut(s) 29, 118, 472, 497
AsuNHI GCTAGC 1 cut(s) 536
AvrII CCTAGG 1 cut(s) 373
BanI GGYRCC 1 cut(s) 182
BbrPI CACGTG 1 cut(s) 212
BccI CCATC 2 cut(s) 125, 443
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 12, 275
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 3 cut(s) 257, 374, 537
BisI GCNGC 3 cut(s) 142, 145, 226
BlnI CCTAGG 1 cut(s) 373
BlsI GCNGC 3 cut(s) 143, 146, 227
Bme1390I CCNGG 3 cut(s) 12, 169, 275
BmiI GGNNCC 2 cut(s) 173, 184
BmrFI CCNGG 3 cut(s) 12, 169, 275
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 1 cut(s) 523
BmtI GCTAGC 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 573
BoxI GACNNNNGTC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 10, 139, 273, 373
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 3 cut(s) 202, 352, 568
BseBI CCWGG 2 cut(s) 12, 275
BseDI CCNNGG 4 cut(s) 10, 139, 273, 373
BseGI GGATG 2 cut(s) 198, 538
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 3 cut(s) 202, 352, 568
BseRI GAGGAG 2 cut(s) 241, 478
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 256, 605
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 256, 605
BsnI GGCC 1 cut(s) 228
Bsp143I GATC 5 cut(s) 282, 363, 411, 427, 432
BspACI CCGC 4 cut(s) 139, 141, 144, 225
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 619
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 173, 184
BspOI GCTAGC 1 cut(s) 540
BspPI GGATC 2 cut(s) 358, 435
BspT107I GGYRCC 1 cut(s) 182
BsrI ACTGG 3 cut(s) 202, 352, 568
BssECI CCNNGG 4 cut(s) 10, 139, 273, 373
BssMI GATC 5 cut(s) 282, 363, 411, 427, 432
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 2 cut(s) 12, 275
Bst4CI ACNGT 3 cut(s) 101, 124, 386
Bst6I CTCTTC 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 91, 538
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 198, 538
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 3 cut(s) 149, 159, 209
BstKTI GATC 5 cut(s) 285, 366, 414, 430, 435
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 5 cut(s) 282, 363, 411, 427, 432
BstMWI GCNNNNNNNGC 4 cut(s) 189, 213, 222, 632
BstNI CCWGG 2 cut(s) 12, 275
BstPAI GACNNNNGTC 1 cut(s) 317
BstSCI CCNGG 3 cut(s) 10, 167, 273
BstUI CGCG 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 363, 427
BstYI RGATCY 2 cut(s) 363, 427
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 597
BtsCI GGATG 2 cut(s) 198, 538
BtsIMutI CAGTG 6 cut(s) 97, 120, 209, 336, 345, 531
Cac8I GCNNGC 2 cut(s) 91, 538
CciI TCATGA 1 cut(s) 400
CfoI GCGC 3 cut(s) 149, 159, 209
Cfr42I CCGCGG 1 cut(s) 142
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 571
CviAII CATG 4 cut(s) 310, 368, 401, 617
CviJI RGCY 4 cut(s) 192, 228, 505, 540
CviKI_1 RGCY 4 cut(s) 192, 228, 505, 540
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 1 cut(s) 627
DpnI GATC 5 cut(s) 284, 365, 413, 429, 434
DpnII GATC 5 cut(s) 282, 363, 411, 427, 432
DraIII CACNNNGTG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 373
Eco57I CTGAAG 3 cut(s) 172, 360, 507
Eco72I CACGTG 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 10, 273
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 4 cut(s) 313, 371, 404, 620
FaqI GGGAC 2 cut(s) 256, 605
FatI CATG 4 cut(s) 309, 367, 400, 616
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 142, 145, 226
FokI GGATG 2 cut(s) 185, 545
Fsp4HI GCNGC 3 cut(s) 142, 145, 226
FspAI RTGCGCAY 1 cut(s) 208
FspBI CTAG 3 cut(s) 257, 374, 537
FspI TGCGCA 1 cut(s) 208
GlaI GCGC 3 cut(s) 148, 158, 208
GluI GCNGC 3 cut(s) 142, 145, 226
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 169
HgaI GACGC 1 cut(s) 95
HhaI GCGC 3 cut(s) 149, 159, 209
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 313, 371, 404, 620
Hin6I GCGC 3 cut(s) 147, 157, 207
HinP1I GCGC 3 cut(s) 147, 157, 207
HinfI GANTC 3 cut(s) 15, 28, 107
HpaII CCGG 1 cut(s) 169
HphI GGTGA 4 cut(s) 29, 118, 472, 497
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 3 cut(s) 391, 432, 498
Hpy188III TCNNGA 2 cut(s) 322, 401
Hpy8I GTNNAC 1 cut(s) 561
HpyAV CCTTC 5 cut(s) 139, 196, 254, 335, 386
HpyCH4III ACNGT 3 cut(s) 101, 124, 386
HpyCH4IV ACGT 2 cut(s) 211, 573
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 213, 222, 632
HpyF3I CTNAG 1 cut(s) 627
HpySE526I ACGT 2 cut(s) 211, 573
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 313, 371, 404, 620
HspAI GCGC 3 cut(s) 147, 157, 207
Ksp22I TGATCA 1 cut(s) 411
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 5 cut(s) 282, 363, 411, 427, 432
LmnI GCTCC 1 cut(s) 197
LweI GCATC 1 cut(s) 523
MaeI CTAG 3 cut(s) 257, 374, 537
MaeII ACGT 2 cut(s) 211, 573
MaeIII GTNAC 1 cut(s) 124
MalI GATC 5 cut(s) 284, 365, 413, 429, 434
MboI GATC 5 cut(s) 282, 363, 411, 427, 432
MboII GAAGA 2 cut(s) 371, 513
MflI RGATCY 2 cut(s) 363, 427
MlyI GAGTC 3 cut(s) 9, 22, 101
MmeI TCCRAC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 1 cut(s) 646
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 2 cut(s) 141, 225
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 12, 169, 275
MvaI CCWGG 2 cut(s) 12, 275
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 189, 213, 222, 632
NciI CCSGG 1 cut(s) 169
NdeII GATC 5 cut(s) 282, 363, 411, 427, 432
NheI GCTAGC 1 cut(s) 536
NlaIII CATG 4 cut(s) 313, 371, 404, 620
NlaIV GGNNCC 2 cut(s) 173, 184
NmuCI GTSAC 1 cut(s) 124
NsbI TGCGCA 1 cut(s) 208
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 396
PkrI GCNGC 3 cut(s) 143, 146, 227
PleI GAGTC 3 cut(s) 9, 22, 101
PmaCI CACGTG 1 cut(s) 212
PmlI CACGTG 1 cut(s) 212
PpsI GAGTC 3 cut(s) 9, 22, 101
Ppu21I YACGTR 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 10, 273
PspCI CACGTG 1 cut(s) 212
PspGI CCWGG 2 cut(s) 10, 273
PspN4I GGNNCC 2 cut(s) 173, 184
PsuI RGATCY 2 cut(s) 363, 427
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 405
SacII CCGCGG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 646
SatI GCNGC 3 cut(s) 142, 145, 226
Sau3AI GATC 5 cut(s) 282, 363, 411, 427, 432
SchI GAGTC 3 cut(s) 9, 22, 101
ScrFI CCNGG 3 cut(s) 12, 169, 275
SfaNI GCATC 1 cut(s) 523
Sfr303I CCGCGG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 4 cut(s) 139, 141, 144, 225
SspMI CTAG 3 cut(s) 257, 374, 537
StyD4I CCNGG 3 cut(s) 10, 167, 273
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 3 cut(s) 101, 124, 386
TaiI ACGT 2 cut(s) 214, 576
TaqI TCGA 4 cut(s) 132, 285, 291, 435
TauI GCSGC 3 cut(s) 144, 147, 228
Tru1I TTAA 1 cut(s) 646
Tru9I TTAA 1 cut(s) 646
TscAI CASTG 6 cut(s) 104, 127, 209, 343, 352, 531
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 389, 433, 605
TspRI CASTG 6 cut(s) 104, 127, 209, 343, 352, 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 3 cut(s) 257, 374, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.