Rw5G027940

Protein CURVATURE THYLAKOID 1A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0005869
Physical Location & Seq
Forward (+)
41651425 .. 41653213
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027940.1

Sequence Viewer

Length: 408 bp
ATGAGTATTGAGTCGTCTTCACTATTCATTGAATACTTCGGATCCCGGAGGTGTTCCCTTCAGATCAGAGCATTATCTTCGGAAGAGACATCCACTTCTGTTTACACTGGTGAACTGATATCAGACTTGAAGGAGAAATGGCATGCAGTTGAAAACAAGTCAACAGTAGTTCTGTATGGAGGTGGGGCAATCGTAGCTGTGTGGCTGTCTTCAATAGTTGTTGGTGCCGTCTATTCAGTGCCACTGCATCCAAAGGTCCTGGAGTTGGTAGGACTAGGATATACTGGTTGGTCCAAATATCAAATTCACAAATCTTTCAGAATTCGAACACCATTAATGCAGTATGAAAGCAAAGAATCACACATATATGGCAACCTACATGCGGGAACGAGTTCAAGCTCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAAD

Protein Analysis

135

Amino Acids

14.91

Weight (kDa)

7.88

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 42 - 101 2.4e-16 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AciI CCGC 1 cut(s) 383
AclWI GGATC 2 cut(s) 36, 49
AcsI RAATTY 2 cut(s) 303, 321
AcuI CTGAAG 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 265, 382
AgsI TTSAA 5 cut(s) 32, 130, 152, 213, 396
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 2 cut(s) 197, 399
AluI AGCT 2 cut(s) 197, 399
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 36, 49
ApoI RAATTY 2 cut(s) 303, 321
AseI ATTAAT 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 256, 291
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 122
AsuII TTCGAA 1 cut(s) 325
AvaII GGWCC 2 cut(s) 256, 291
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 9, 201
BceAI ACGGC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 275
Bme1390I CCNGG 2 cut(s) 46, 260
Bme18I GGWCC 2 cut(s) 256, 291
BmgT120I GGNCC 2 cut(s) 256, 291
BmiI GGNNCC 2 cut(s) 43, 226
BmrFI CCNGG 2 cut(s) 46, 260
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 9, 201
BpmI CTGGAG 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 382
Bse1I ACTGG 2 cut(s) 112, 289
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 89, 247
BseLI CCNNNNNNNGG 2 cut(s) 265, 382
BseNI ACTGG 2 cut(s) 112, 289
BshNI GGYRCC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 265, 382
BsmAI GTCTC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 41, 63
BspACI CCGC 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 43, 226
BspPI GGATC 2 cut(s) 36, 49
BspT104I TTCGAA 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 112, 289
BssMI GATC 2 cut(s) 41, 63
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 144
BstF5I GGATG 2 cut(s) 89, 247
BstKTI GATC 2 cut(s) 44, 66
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 41, 63
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 2 cut(s) 146, 383
BstSCI CCNGG 2 cut(s) 44, 258
BstV2I GAAGAC 2 cut(s) 9, 201
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BtsCI GGATG 2 cut(s) 89, 247
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 3 cut(s) 105, 242, 243
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 256, 291
CviAII CATG 2 cut(s) 143, 380
CviJI RGCY 3 cut(s) 197, 205, 399
CviKI_1 RGCY 3 cut(s) 197, 205, 399
DpnI GATC 2 cut(s) 43, 65
DpnII GATC 2 cut(s) 41, 63
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 256, 291
Eco57I CTGAAG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 258
EcoRV GATATC 1 cut(s) 120
FaeI CATG 2 cut(s) 146, 383
FaiI YATR 9 cut(s) 144, 177, 282, 345, 365, 367, 369, 381, 406
FatI CATG 2 cut(s) 142, 379
FauI CCCGC 1 cut(s) 376
FokI GGATG 2 cut(s) 76, 234
FspBI CTAG 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 281
HapII CCGG 1 cut(s) 46
Hin1II CATG 2 cut(s) 146, 383
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 2 cut(s) 11, 356
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 3 cut(s) 103, 113, 162
Hpy188I TCNGA 6 cut(s) 41, 63, 68, 82, 124, 320
Hpy8I GTNNAC 3 cut(s) 103, 113, 162
HpyAV CCTTC 2 cut(s) 68, 124
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 146, 247, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 146, 383
Kzo9I GATC 2 cut(s) 41, 63
LpnPI CCDG 5 cut(s) 59, 93, 245, 270, 272
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 275
MalI GATC 2 cut(s) 43, 65
MboI GATC 2 cut(s) 41, 63
MboII GAAGA 4 cut(s) 9, 69, 95, 201
MflI RGATCY 1 cut(s) 41
MluCI AATT 2 cut(s) 303, 321
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 2 cut(s) 42, 173
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 366
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 2 cut(s) 46, 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 46
NdeII GATC 2 cut(s) 41, 63
NlaIII CATG 2 cut(s) 146, 383
NlaIV GGNNCC 2 cut(s) 43, 226
NspI RCATGY 2 cut(s) 146, 383
NspV TTCGAA 1 cut(s) 325
PaeI GCATGC 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 2 cut(s) 44, 258
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 43, 226
PspPI GGNCC 2 cut(s) 256, 291
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 335
Sau3AI GATC 2 cut(s) 41, 63
Sau96I GGNCC 2 cut(s) 256, 291
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 46, 260
SetI ASST 6 cut(s) 53, 184, 199, 258, 378, 401
SfaNI GCATC 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 325
SinI GGWCC 2 cut(s) 256, 291
SmiMI CAYNNNNRTG 1 cut(s) 366
SphI GCATGC 1 cut(s) 146
Sse9I AATT 2 cut(s) 303, 321
SsiI CCGC 1 cut(s) 383
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 44, 258
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 325
TasI AATT 2 cut(s) 303, 321
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 3 cut(s) 112, 243, 249
TspDTI ATGAA 2 cut(s) 16, 360
TspRI CASTG 3 cut(s) 112, 243, 249
VpaK11BI GGWCC 2 cut(s) 256, 291
VspI ATTAAT 1 cut(s) 335
XapI RAATTY 2 cut(s) 303, 321
XceI RCATGY 2 cut(s) 146, 383
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.