Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005869

Physical Location & Seq

Genomic Coordinates Reverse (-)

16151274 .. 16153523

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAGCGACAGCCTCAACCATGGCGGCCACCGCCGTCTTCATCCCACGTTTCCCCACCAAACCCACCTGCTACTCCGCCTTATCTTACCTCCCTCCTCGCCTCTCCTCCTCCCCTTCTTCCTTCCCTCTTAAATCCTTCTCAGGGTCCCGGAGGCTTTCTCTTCCGGTCAGAGCTTCATCTTCAGACGAGACATCCACATCCGTGGACACTGATGAACTTTTATCAGACTTGAAGGAGAAGTGGGATGCAGTTGAAAATAAGTCTACACTACTTCTATATGGAGGTGGGGCGATAGTCGCTGTGTGGTTGTCCTCAACAGTTGTTGGCGCCGTCAATTCAGTGCCACTTCTTCCAAAAGTCCTGGAGTTGGTAGGGCTAGGATACACTGGATGGTTTGTCTACCGTTACCTACTCTTCAAGTCAAGCAGAAAAGAACTAGCTACAGACATTGAAGCACTGAAGAAGAAGATTGCTGGAACTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

163

Amino Acids

17.44

Weight (kDa)

9.21

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01150 AT4G01150
fragaria_vesca	FvH4_7g15760 FvH4_7g15760 FvH4_7g15760 FvH4_7g15760
malus_domestica	MD01G1074400.v1.1 MD07G1143300.v1.1
prunus_persica	Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1
pyrus_communis	pycom01g10350 pycom07g14200
rosa_chinensis	RchiOBHm_Chr1g0358531 RchiOBHm_Chr5g0044891
rosa_laevigata	RLG00000027954 RLG00000034304
rosa_multiflora	Rmu_sc0001609.1_g000005 Rmu_sc0020854.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297830
rosa_rugosa	Rorug01G0262400
rosa_samantha	Rh1AG277100 Rh1BG243400 Rh1CG260600 Rh1DG271700
rosa_wichuraiana	Rw1G024630 Rw5G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	2 cut(s)	266, 402
AciI	CCGC	3 cut(s)	26, 33, 78
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	168, 482
AcyI	GRCGYC	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	144, 370
AgsI	TTSAA	4 cut(s)	235, 257, 421, 455
AjnI	CCWGG	1 cut(s)	363
AleI	CACNNNNGTG	1 cut(s)	203
AluBI	AGCT	2 cut(s)	176, 443
AluI	AGCT	2 cut(s)	176, 443
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	387
BceAI	ACGGC	2 cut(s)	20, 317
BciT130I	CCWGG	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	380, 440
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	2 cut(s)	6, 27
BlsI	GCNGC	2 cut(s)	7, 28
Bme1390I	CCNGG	2 cut(s)	151, 365
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	3 cut(s)	148, 149, 331
BmrFI	CCNGG	2 cut(s)	151, 365
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	21, 204
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 370
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	21, 204
BseGI	GGATG	5 cut(s)	42, 194, 200, 253, 398
BseLI	CCNNNNNNNGG	2 cut(s)	144, 370
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	3 cut(s)	87, 97, 100
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	151, 167
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	144, 370
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	29
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	26, 33, 78
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	155
BspLI	GGNNCC	3 cut(s)	148, 149, 331
BspMI	ACCTGC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	21, 204
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	322, 407
Bst6I	CTCTTC	2 cut(s)	168, 422
BstACI	GRCGYC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	142
BstDSI	CCRYGG	2 cut(s)	21, 204
BstF5I	GGATG	5 cut(s)	42, 194, 200, 253, 398
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstMAI	GTCTC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 32, 299
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	149, 363
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	2 cut(s)	21, 204
BtsCI	GGATG	5 cut(s)	42, 194, 200, 253, 398
BtsIMutI	CAGTG	4 cut(s)	210, 348, 387, 458
BveI	ACCTGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	147
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	6 cut(s)	14, 29, 157, 176, 379, 443
CviKI_1	RGCY	6 cut(s)	14, 29, 157, 176, 379, 443
DdeI	CTNAG	1 cut(s)	142
DinI	GGCGCC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	168, 422
EarI	CTCTTC	2 cut(s)	168, 422
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	168, 482
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	25
FaiI	YATR	3 cut(s)	23, 280, 282
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	1 cut(s)	21
FblI	GTMKAC	2 cut(s)	266, 402
Fnu4HI	GCNGC	2 cut(s)	6, 27
FokI	GGATG	5 cut(s)	29, 181, 187, 260, 405
Fsp4HI	GCNGC	2 cut(s)	6, 27
FspBI	CTAG	2 cut(s)	380, 440
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	2 cut(s)	6, 27
GsuI	CTGGAG	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	151, 167
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HpaII	CCGG	2 cut(s)	151, 167
Hpy166II	GTNNAC	3 cut(s)	208, 267, 403
Hpy188I	TCNGA	3 cut(s)	173, 187, 229
Hpy8I	GTNNAC	3 cut(s)	208, 267, 403
HpyAV	CCTTC	4 cut(s)	126, 133, 148, 229
HpyCH4III	ACNGT	2 cut(s)	322, 407
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 32, 299
HpyF3I	CTNAG	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	330
KasI	GGCGCC	1 cut(s)	329
KflI	GGGWCCC	1 cut(s)	147
LpnPI	CCDG	8 cut(s)	82, 129, 164, 180, 350, 375, 377, 462
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	380, 440
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	407
MboII	GAAGA	9 cut(s)	31, 111, 155, 174, 344, 409, 475, 478, 481
MluCI	AATT	1 cut(s)	337
Mly113I	GGCGCC	1 cut(s)	330
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	2 cut(s)	151, 167
MspR9I	CCNGG	2 cut(s)	151, 365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	11, 32, 299
NarI	GGCGCC	1 cut(s)	330
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	21
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	3 cut(s)	148, 149, 331
OliI	CACNNNNGTG	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	77
PfoI	TCCNGGA	2 cut(s)	149, 363
PkrI	GCNGC	2 cut(s)	7, 28
PluTI	GGCGCC	1 cut(s)	333
PpuMI	RGGWCCY	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	148, 149, 331
PspPI	GGNCC	1 cut(s)	147
PspPPI	RGGWCCY	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	6, 27
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	151, 365
SetI	ASST	7 cut(s)	52, 71, 93, 178, 289, 414, 445
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	444
SfoI	GGCGCC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	3 cut(s)	26, 33, 78
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	380, 440
StyD4I	CCNGG	2 cut(s)	149, 363
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	322, 407
TaiI	ACGT	1 cut(s)	52
TasI	AATT	1 cut(s)	337
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	4 cut(s)	217, 348, 394, 465
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	31, 168, 231
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	4 cut(s)	217, 348, 394, 465
VpaK11BI	GGWCC	1 cut(s)	147
XmiI	GTMKAC	2 cut(s)	266, 402
XspI	CTAG	2 cut(s)	380, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.