RLG00000034304

Protein CURVATURE THYLAKOID 1A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005869
Physical Location & Seq
Forward (+)
40291814 .. 40294751
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034304

Sequence Viewer

Length: 456 bp
ATGCGCCTGCAAGATTTCATCTTTAGCTCTAGTAGTGAAATCAGTTTCGACAGACTTTCTCAAGAGTCCCAGAGGCGTTCCCTTCAGATCGGAGCATCATCTTCGGAAGAGACATCCACTTCTGTTTACACTGGTGAACTGATATCAGACTTGAAGGAGAAATGGCATGCAGTTGAAAACAAGTCAACAGTACTTCTGTATGGAGGTGGGGCAATCGTAGCTGTGTGGCTGTCTTCAATAGTTGTTGGTGCCGTCTATTCAGTGCCACTGCATCCAAAGGTCCTGGAGTTGGTAGGGCTAGGATATACTGCACCCCACCCGGCTACTCTAAATTTTGGAGTAGATATAGCTATTAAGAGTAGTTGGGCCGTGAAAACCCCCATTCTTAGGCTGAAAGGGTTAGGGCTGACCAAGGACATTTTTGAATCTGACGGGGATCTCTGTAAATCATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAAD

Protein Analysis

152

Amino Acids

16.33

Weight (kDa)

5.89

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 50 - 104 4.2e-14 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 289, 387
AgsI TTSAA 4 cut(s) 154, 176, 237, 425
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 3 cut(s) 27, 221, 350
AluI AGCT 3 cut(s) 27, 221, 350
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 444
AoxI GGCC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 331
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 280, 366
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 225
BceAI ACGGC 2 cut(s) 236, 353
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 284
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 30, 299
BmcAI AGTACT 1 cut(s) 192
Bme1390I CCNGG 2 cut(s) 284, 320
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 280, 366
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 284, 320
BmsI GCATC 2 cut(s) 104, 280
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 387
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 2 cut(s) 113, 271
BseLI CCNNNNNNNGG 2 cut(s) 289, 387
BseNI ACTGG 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 1 cut(s) 368
BshNI GGYRCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 2 cut(s) 289, 387
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 1 cut(s) 368
Bsp143I GATC 2 cut(s) 87, 436
BspANI GGCC 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 2 cut(s) 87, 436
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 8, 168
BstDEI CTNAG 1 cut(s) 386
BstF5I GGATG 2 cut(s) 113, 271
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 90, 439
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 87, 436
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 282, 318
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 2 cut(s) 113, 271
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 3 cut(s) 129, 266, 267
Cac8I GCNNGC 2 cut(s) 8, 168
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 280, 366
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 167
CviJI RGCY 9 cut(s) 27, 221, 229, 298, 323, 350, 368, 391, 406
CviKI_1 RGCY 9 cut(s) 27, 221, 229, 298, 323, 350, 368, 391, 406
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 386
DpnI GATC 2 cut(s) 89, 438
DpnII GATC 2 cut(s) 87, 436
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 411
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 170
FaiI YATR 4 cut(s) 168, 201, 306, 347
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 166
FokI GGATG 2 cut(s) 100, 258
FspBI CTAG 2 cut(s) 30, 299
GlaI GCGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 1 cut(s) 368
HapII CCGG 1 cut(s) 320
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 2 cut(s) 65, 425
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 127, 137, 186
Hpy188I TCNGA 5 cut(s) 87, 92, 106, 148, 430
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 3 cut(s) 127, 137, 186
HpyAV CCTTC 2 cut(s) 92, 148
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 4 cut(s) 10, 170, 271, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 386
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 87, 436
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 20, 83, 117, 269, 296, 333
LweI GCATC 2 cut(s) 104, 280
MaeI CTAG 2 cut(s) 30, 299
MalI GATC 2 cut(s) 89, 438
MboI GATC 2 cut(s) 87, 436
MboII GAAGA 3 cut(s) 93, 119, 225
MflI RGATCY 1 cut(s) 436
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 2 cut(s) 66, 197
MseI TTAA 1 cut(s) 354
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 284, 320
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 320
NdeII GATC 2 cut(s) 87, 436
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 250
NspI RCATGY 1 cut(s) 170
PaeI GCATGC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 282
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 280, 366
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 2 cut(s) 87, 436
Sau96I GGNCC 2 cut(s) 280, 366
ScaI AGTACT 1 cut(s) 192
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 284, 320
SetI ASST 5 cut(s) 29, 208, 223, 282, 352
SfaNI GCATC 2 cut(s) 104, 280
SinI GGWCC 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SphI GCATGC 1 cut(s) 170
Sse9I AATT 1 cut(s) 331
SspMI CTAG 2 cut(s) 30, 299
StyD4I CCNGG 2 cut(s) 282, 318
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 3 cut(s) 136, 267, 273
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 3 cut(s) 136, 267, 273
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 331
XceI RCATGY 1 cut(s) 170
XspI CTAG 2 cut(s) 30, 299
ZrmI AGTACT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.