Prupe.2G182400_v2.0.a1

Protein CURVATURE THYLAKOID 1A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0005869
Physical Location & Seq
Reverse (-)
22499528 .. 22502344
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G182400.3

Sequence Viewer

Length: 489 bp
ATGGCAGCGACAGCCTCATCCATGGCGACCACGGCCGTCTTCATGCCGCGTCTCCCCGCTAAACCCACTCGCTGCTCTGCCTTGCCTTACCTCCCTCCTCGCCTCTCGTCCACCACATCTTCCTTCCCTCTTAAAGCCTTTCCAGAATCCCGGAGGCTTTCTCTCCAGATCAGAGCATCATCTTCAGAAGAGACATCCACTTCCGTTGACACTGGTGAGCTGTTAACAGACTTGAAGGAGAAGTGGGATGCAGTTGAAAACAAGTCAACAGTAATTCTGTATGGAGGTGGTGCGATAGTCGCTGTGTGGTTGTCTTCAATAATTGTTGGTGCCGTCAATTCAGTGCCACTTCTTCCAAAGGTCCTGGAGTTGGTAGGGCTAGGATACACTGGATGGTTTGTCTACCGTTACCTACTCTTCAAGTCAAGCAGAAAAGAACTAGCTACAGACATTGAAGCATTGAAGAAGAAGATTGCTGGAACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAAD

Protein Analysis

163

Amino Acids

17.53

Weight (kDa)

9.41

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 402
AccII CGCG 1 cut(s) 49
AciI CCGC 2 cut(s) 47, 57
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 6 cut(s) 235, 257, 318, 421, 455, 463
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 2 cut(s) 220, 443
AluI AGCT 2 cut(s) 220, 443
Alw26I GTCTC 2 cut(s) 56, 185
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 5, 72
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 31, 306
BbvI GCAGC 2 cut(s) 17, 59
BccI CCATC 1 cut(s) 387
BceAI ACGGC 3 cut(s) 20, 48, 317
BciT130I CCWGG 1 cut(s) 365
BciVI GTATCC 1 cut(s) 377
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 56, 185
BfaI CTAG 2 cut(s) 380, 440
BfmI CTRYAG 1 cut(s) 444
BfuI GTATCC 1 cut(s) 377
BisI GCNGC 3 cut(s) 6, 47, 73
BlsI GCNGC 3 cut(s) 7, 48, 74
Bme1390I CCNGG 2 cut(s) 151, 365
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 2 cut(s) 151, 365
BmsI GCATC 2 cut(s) 185, 238
BpiI GAAGAC 2 cut(s) 31, 306
BplI GAGNNNNNCTC 2 cut(s) 145, 177
BpmI CTGGAG 2 cut(s) 149, 386
BpuMI CCSGG 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 21, 30
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 217, 394
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 21, 30
BseGI GGATG 4 cut(s) 17, 194, 253, 398
BseLI CCNNNNNNNGG 1 cut(s) 370
BseNI ACTGG 2 cut(s) 217, 394
BseRI GAGGAG 1 cut(s) 87
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 17, 59
Bsh1236I CGCG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 329
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 2 cut(s) 56, 185
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 168
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 47, 57
BspANI GGCC 1 cut(s) 35
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 329
BsrI ACTGG 2 cut(s) 217, 394
BssECI CCNNGG 2 cut(s) 21, 30
BssMI GATC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 271, 407
Bst6I CTCTTC 2 cut(s) 183, 422
BstDSI CCRYGG 2 cut(s) 21, 30
BstF5I GGATG 4 cut(s) 17, 194, 253, 398
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 2 cut(s) 56, 185
BstMBI GATC 1 cut(s) 168
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 11, 32, 299
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 149, 363
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 17, 59
BstV2I GAAGAC 2 cut(s) 31, 306
BstZI CGGCCG 1 cut(s) 33
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 2 cut(s) 21, 30
BtsCI GGATG 4 cut(s) 17, 194, 253, 398
BtsIMutI CAGTG 3 cut(s) 210, 348, 387
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 2 cut(s) 22, 43
CviJI RGCY 7 cut(s) 14, 35, 137, 157, 220, 379, 443
CviKI_1 RGCY 7 cut(s) 14, 35, 137, 157, 220, 379, 443
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 183, 422
EarI CTCTTC 2 cut(s) 183, 422
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 25, 46
FaiI YATR 3 cut(s) 23, 44, 282
FatI CATG 2 cut(s) 21, 42
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 6, 47, 73
FokI GGATG 4 cut(s) 4, 181, 260, 405
Fsp4HI GCNGC 3 cut(s) 6, 47, 73
FspBI CTAG 2 cut(s) 380, 440
GluI GCNGC 3 cut(s) 6, 47, 73
GsuI CTGGAG 2 cut(s) 149, 386
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 151
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 25, 46
HincII GTYRAC 3 cut(s) 208, 225, 267
HindII GTYRAC 3 cut(s) 208, 225, 267
HinfI GANTC 1 cut(s) 146
HpaI GTTAAC 1 cut(s) 225
HpaII CCGG 1 cut(s) 151
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 5 cut(s) 111, 208, 225, 267, 403
Hpy188I TCNGA 2 cut(s) 173, 187
Hpy188III TCNNGA 2 cut(s) 143, 166
Hpy8I GTNNAC 5 cut(s) 111, 208, 225, 267, 403
HpyAV CCTTC 2 cut(s) 133, 229
HpyCH4III ACNGT 2 cut(s) 271, 407
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 32, 299
Hsp92II CATG 2 cut(s) 25, 46
KspAI GTTAAC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 8 cut(s) 156, 164, 179, 198, 350, 375, 377, 462
Lsp1109I GCAGC 2 cut(s) 17, 59
LweI GCATC 2 cut(s) 185, 238
MaeI CTAG 2 cut(s) 380, 440
MaeIII GTNAC 1 cut(s) 407
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MluCI AATT 3 cut(s) 273, 321, 337
MnlI CCTC 8 cut(s) 25, 101, 105, 108, 113, 138, 147, 278
MseI TTAA 2 cut(s) 132, 224
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 151, 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 11, 32, 299
NciI CCSGG 1 cut(s) 151
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 168
NlaIII CATG 2 cut(s) 25, 46
NlaIV GGNNCC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 146
PfoI TCCNGGA 2 cut(s) 149, 363
PkrI GCNGC 3 cut(s) 7, 48, 74
PpuMI RGGWCCY 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 361
SaqAI TTAA 2 cut(s) 132, 224
SatI GCNGC 3 cut(s) 6, 47, 73
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 151, 365
SetI ASST 6 cut(s) 93, 222, 289, 363, 414, 445
SfaNI GCATC 2 cut(s) 185, 238
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 361
Sse9I AATT 3 cut(s) 273, 321, 337
SsiI CCGC 2 cut(s) 47, 57
SspMI CTAG 2 cut(s) 380, 440
StyD4I CCNGG 2 cut(s) 149, 363
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 271, 407
TasI AATT 3 cut(s) 273, 321, 337
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 132, 224
Tru9I TTAA 2 cut(s) 132, 224
TscAI CASTG 3 cut(s) 217, 348, 394
TseI GCWGC 2 cut(s) 5, 72
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 3 cut(s) 217, 348, 394
VpaK11BI GGWCC 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 2 cut(s) 380, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.