RchiOBHm_Chr5g0044891

Protein CURVATURE THYLAKOID 1A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005869
Physical Location & Seq
Forward (+)
40404202 .. 40404744
543 bp
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UTR
Exon/CDS
Intron
PRQ32303

Sequence Viewer

Length: 231 bp
ATGGTATTGAGTCAGTCCCGGAGGTGTTCCCTTCAGATGAGAGCATCATCTTCGGAAGAGACATCCACTTCTGTTTACACTGGTGAACTGATATCAGACTTGAAGGAGAAATGGCATGCAGTTGAAAACAAGTCAACAGTACTTCTGTATGGAGGTGGGGCAATCGTAGCTGTGTGGCTGTCTTCAATAGTTGTTGGTGCCGTCTATTCAGTGCCACTAGTAACTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAAD

Protein Analysis

76

Amino Acids

8.24

Weight (kDa)

6.54

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 33 - 74 2.5e-07 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 1 cut(s) 141
AgsI TTSAA 3 cut(s) 103, 125, 186
AhlI ACTAGT 1 cut(s) 217
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 174
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 53
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 2 cut(s) 218, 229
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 117
BstF5I GGATG 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 78, 216
Cac8I GCNNGC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 140
CviAII CATG 1 cut(s) 116
CviJI RGCY 2 cut(s) 170, 178
CviKI_1 RGCY 2 cut(s) 170, 178
CviQI GTAC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco32I GATATC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 17
EcoRV GATATC 1 cut(s) 93
FaeI CATG 1 cut(s) 119
FaiI YATR 2 cut(s) 117, 150
FatI CATG 1 cut(s) 115
FokI GGATG 1 cut(s) 49
FspBI CTAG 2 cut(s) 218, 229
HapII CCGG 1 cut(s) 19
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 19
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 76, 86, 135
Hpy188I TCNGA 3 cut(s) 36, 55, 97
Hpy8I GTNNAC 3 cut(s) 76, 86, 135
HpyAV CCTTC 2 cut(s) 41, 97
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 1 cut(s) 119
LpnPI CCDG 2 cut(s) 32, 66
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 218, 229
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 3 cut(s) 42, 68, 174
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 2 cut(s) 15, 146
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 19
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 199
NspI RCATGY 1 cut(s) 119
PaeI GCATGC 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 17
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 141
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 19
SetI ASST 3 cut(s) 26, 157, 172
SfaNI GCATC 1 cut(s) 53
SgeI CNNG 6 cut(s) 30, 31, 93, 112, 128, 142
SpeI ACTAGT 1 cut(s) 217
SphI GCATGC 1 cut(s) 119
SspMI CTAG 2 cut(s) 218, 229
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 139
TatI WGTACW 1 cut(s) 139
TscAI CASTG 2 cut(s) 85, 216
TspRI CASTG 2 cut(s) 85, 216
XceI RCATGY 1 cut(s) 119
XspI CTAG 2 cut(s) 218, 229
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.