Rh1CG260600

Protein CURVATURE THYLAKOID 1A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005869
Physical Location & Seq
Reverse (-)
52542605 .. 52544495
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG260600.1

Sequence Viewer

Length: 489 bp
ATGGCAGCGACAGCCTCCTCCATGGCGGCCACCGCCGTGTTTGTGCCACGTGTCCCCTCCACAACCATCCGCTGCTCGGCCTTGCGTTACCTCCCACCTCGTGTCTCCTCCTCCTCCCCGTCTTGCTTTGCCATTAGAGCTTCCTCAGAGTCCCGGAGGCGTTCCCTTCGGGTCAAAGCATCATCTGAAGAGACATCCACTTCCGTTGACACTGGAGAACTAATATCAGACTTGAAGGAGAAGTGGGATGCAGTTGAAAACAAGTCAACAGTACTTGTGTATGGAGGTGGGGCAATCGTTGTTTTGTGGCTGTCTTCAATAGTTGTTGGTGCCGTCAATTCAGTGCCACTGCTTCCAAAGATCCTGGAGTTGGTAGGGCTAGGATATACTGGATGGTTCGTCTACCGTTACCTGCTCTTCAAGTCGAGCAGAAAAGAACTAGCTACAGACATTGATGCATTGAAGAAGAAGATCACTGGAACCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAAD

Protein Analysis

162

Amino Acids

17.49

Weight (kDa)

9.61

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 77 - 160 4.6e-32 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 402
AciI CCGC 3 cut(s) 26, 33, 70
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 207
AcvI CACGTG 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 76, 370
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 5 cut(s) 235, 257, 318, 421, 463
AjnI CCWGG 1 cut(s) 363
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 2 cut(s) 140, 443
AluI AGCT 2 cut(s) 140, 443
Alw26I GTCTC 2 cut(s) 109, 185
AlwI GGATC 1 cut(s) 355
AoxI GGCC 2 cut(s) 27, 78
ApeKI GCWGC 2 cut(s) 5, 72
AsuC2I CCSGG 1 cut(s) 154
BanI GGYRCC 1 cut(s) 329
BauI CACGAG 1 cut(s) 99
BbrPI CACGTG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 17, 59
BccI CCATC 2 cut(s) 74, 387
BceAI ACGGC 2 cut(s) 20, 317
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 109, 185
BfaI CTAG 2 cut(s) 380, 440
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 3 cut(s) 6, 27, 73
BlsI GCNGC 3 cut(s) 7, 28, 74
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 2 cut(s) 154, 365
BmiI GGNNCC 2 cut(s) 331, 481
BmrFI CCNGG 2 cut(s) 154, 365
BmsI GCATC 3 cut(s) 188, 238, 445
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 2 cut(s) 234, 386
BpuMI CCSGG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 370
Bse1I ACTGG 3 cut(s) 217, 394, 481
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 4 cut(s) 66, 194, 253, 398
BseLI CCNNNNNNNGG 2 cut(s) 76, 370
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 3 cut(s) 217, 394, 481
BseRI GAGGAG 4 cut(s) 7, 97, 100, 103
BseXI GCAGC 2 cut(s) 17, 59
BshFI GGCC 2 cut(s) 29, 80
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 38, 136
BslI CCNNNNNNNGG 2 cut(s) 76, 370
BsmAI GTCTC 2 cut(s) 109, 185
BsmFI GGGAC 2 cut(s) 38, 136
BsnI GGCC 2 cut(s) 29, 80
Bsp143I GATC 2 cut(s) 360, 471
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 26, 33, 70
BspANI GGCC 2 cut(s) 29, 80
BspCNI CTCAG 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 331, 481
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 329
BsrI ACTGG 3 cut(s) 217, 394, 481
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 360, 471
BssSI CACGAG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 271, 407
Bst6I CTCTTC 2 cut(s) 183, 422
BstBAI YACGTR 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 145
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 4 cut(s) 66, 194, 253, 398
BstKTI GATC 2 cut(s) 363, 474
BstMAI GTCTC 2 cut(s) 109, 185
BstMBI GATC 2 cut(s) 360, 471
BstMWI GCNNNNNNNGC 3 cut(s) 11, 32, 137
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 152, 363
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 17, 59
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 2 cut(s) 29, 80
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 4 cut(s) 66, 194, 253, 398
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 4 cut(s) 210, 347, 348, 474
BveI ACCTGC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 1 cut(s) 22
CviJI RGCY 7 cut(s) 14, 29, 80, 140, 310, 379, 443
CviKI_1 RGCY 7 cut(s) 14, 29, 80, 140, 310, 379, 443
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 145
DpnI GATC 2 cut(s) 362, 473
DpnII GATC 2 cut(s) 360, 471
DraIII CACNNNGTG 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 183, 422
EarI CTCTTC 2 cut(s) 183, 422
Eco130I CCWWGG 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 207
Eco72I CACGTG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 282, 387
FaqI GGGAC 2 cut(s) 38, 136
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 6, 27, 73
FokI GGATG 4 cut(s) 53, 181, 260, 405
Fsp4HI GCNGC 3 cut(s) 6, 27, 73
FspBI CTAG 2 cut(s) 380, 440
GluI GCNGC 3 cut(s) 6, 27, 73
GsuI CTGGAG 2 cut(s) 234, 386
HaeIII GGCC 2 cut(s) 29, 80
HapII CCGG 1 cut(s) 154
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 2 cut(s) 208, 267
HindII GTYRAC 2 cut(s) 208, 267
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 154
Hpy166II GTNNAC 3 cut(s) 208, 267, 403
Hpy188I TCNGA 3 cut(s) 148, 187, 229
Hpy8I GTNNAC 3 cut(s) 208, 267, 403
HpyAV CCTTC 2 cut(s) 176, 229
HpyCH4III ACNGT 2 cut(s) 271, 407
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 251, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 32, 137
HpyF3I CTNAG 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 2 cut(s) 360, 471
LguI GCTCTTC 1 cut(s) 422
LpnPI CCDG 7 cut(s) 167, 198, 350, 375, 377, 425, 462
Lsp1109I GCAGC 2 cut(s) 17, 59
LweI GCATC 3 cut(s) 188, 238, 445
MaeI CTAG 2 cut(s) 380, 440
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 86, 407
MalI GATC 2 cut(s) 362, 473
MboI GATC 2 cut(s) 360, 471
MboII GAAGA 6 cut(s) 200, 306, 409, 475, 478, 481
MflI RGATCY 1 cut(s) 360
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 460
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 154, 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 11, 32, 137
NciI CCSGG 1 cut(s) 154
NcoI CCATGG 1 cut(s) 21
NdeII GATC 2 cut(s) 360, 471
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 331, 481
NmeAIII GCCGAG 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 422
PfoI TCCNGGA 2 cut(s) 152, 363
PkrI GCNGC 3 cut(s) 7, 28, 74
PleI GAGTC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 363
PspCI CACGTG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 331, 481
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 422
SatI GCNGC 3 cut(s) 6, 27, 73
Sau3AI GATC 2 cut(s) 360, 471
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 154, 365
SetI ASST 7 cut(s) 52, 93, 100, 142, 289, 414, 445
SfaNI GCATC 3 cut(s) 188, 238, 445
SfcI CTRYAG 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 26, 33, 70
SspMI CTAG 2 cut(s) 380, 440
StyD4I CCNGG 2 cut(s) 152, 363
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 271, 407
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 425
TasI AATT 1 cut(s) 337
TatI WGTACW 1 cut(s) 271
TauI GCSGC 1 cut(s) 29
TscAI CASTG 4 cut(s) 217, 348, 354, 481
TseI GCWGC 2 cut(s) 5, 72
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 4 cut(s) 217, 348, 354, 481
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 2 cut(s) 380, 440
ZrmI AGTACT 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.