FvH4_7g15760

Protein CURVATURE THYLAKOID 1A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005869
Physical Location & Seq
Reverse (-)
13604141 .. 13606885
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15760.t3

Sequence Viewer

Length: 450 bp
ATGGCAGCGACAGCCTCCTCCATGGCGGCCACCGCCTTGTTCGTGCCACGTGTGCCCTCCACTACCGCTCGCTGCTCCGCCTTGGCTTACCTCCCACCTCGTATCTCCTCCTCTTCACCATCGTGCTTTGCCGTTAGAGCTTCCTCAGAGTCCAGGAGGCATTCCCTTCAGATCAGAGCATCATCTTCAGAAGAGACATCCACTTCTGTTGACACTGGTGAACTAATATCAGACTTGAAGGAGAAGTGGGATGCAGTTGAAAACAAGTCAACAGTACTTCTTTATGGAGGTGGGGCAATAGTCGCTGTGTGGTTGTCTTCAATAATTGTTGGTGCCGTCAATTCAGTGCCACTGCTTCCAAAGGTCCTGGAGTTGGTAGGGCTAGGATATACTGGATGGTTTGTCTACCGTTACCTACTCTTCAAGGCAAGTTTAAACCTCTCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAAD

Protein Analysis

150

Amino Acids

15.82

Weight (kDa)

9.03

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 78 - 161 8.9e-32 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccBSI CCGCTC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 405
AciI CCGC 4 cut(s) 26, 33, 66, 78
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 2 cut(s) 152, 171
AcvI CACGTG 1 cut(s) 50
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 4 cut(s) 238, 260, 321, 424
AjnI CCWGG 2 cut(s) 152, 366
AleI CACNNNNGTG 1 cut(s) 121
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 5, 72
AspS9I GGNCC 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 108, 230
AvaII GGWCC 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 332
BbrPI CACGTG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 17, 59
BccI CCATC 2 cut(s) 127, 390
BceAI ACGGC 2 cut(s) 116, 320
BciT130I CCWGG 2 cut(s) 154, 368
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 383
BisI GCNGC 3 cut(s) 6, 27, 73
BlsI GCNGC 3 cut(s) 7, 28, 74
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 2 cut(s) 154, 368
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 154, 368
BmsI GCATC 2 cut(s) 188, 241
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 427
BsaAI YACGTR 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 21, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 2 cut(s) 220, 397
BseBI CCWGG 2 cut(s) 154, 368
BseDI CCNNGG 2 cut(s) 21, 81
BseGI GGATG 3 cut(s) 197, 256, 401
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 220, 397
BseRI GAGGAG 3 cut(s) 7, 97, 100
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 2 cut(s) 17, 59
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 171
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 4 cut(s) 26, 33, 66, 78
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 68
BsrI ACTGG 2 cut(s) 220, 397
BssECI CCNNGG 2 cut(s) 21, 81
BssMI GATC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 21, 81
Bst2UI CCWGG 2 cut(s) 154, 368
Bst4CI ACNGT 2 cut(s) 274, 410
Bst6I CTCTTC 3 cut(s) 118, 186, 425
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 145
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 197, 256, 401
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 5 cut(s) 11, 32, 52, 137, 302
BstNI CCWGG 2 cut(s) 154, 368
BstSCI CCNGG 2 cut(s) 152, 366
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 17, 59
BstV2I GAAGAC 1 cut(s) 309
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 3 cut(s) 197, 256, 401
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 3 cut(s) 213, 350, 351
Cac8I GCNNGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 275
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 1 cut(s) 22
CviJI RGCY 5 cut(s) 14, 29, 86, 140, 382
CviKI_1 RGCY 5 cut(s) 14, 29, 86, 140, 382
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 145
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
DraI TTTAAA 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 3 cut(s) 118, 186, 425
EarI CTCTTC 3 cut(s) 118, 186, 425
EciI GGCGGA 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 21, 81
Eco47I GGWCC 1 cut(s) 364
Eco57I CTGAAG 2 cut(s) 152, 171
Eco72I CACGTG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 152, 366
EcoT14I CCWWGG 2 cut(s) 21, 81
ErhI CCWWGG 2 cut(s) 21, 81
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 285, 390
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 6, 27, 73
FokI GGATG 3 cut(s) 184, 263, 408
Fsp4HI GCNGC 3 cut(s) 6, 27, 73
FspBI CTAG 1 cut(s) 383
GluI GCNGC 3 cut(s) 6, 27, 73
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 2 cut(s) 211, 270
HindII GTYRAC 2 cut(s) 211, 270
HinfI GANTC 1 cut(s) 149
HphI GGTGA 2 cut(s) 108, 230
Hpy166II GTNNAC 4 cut(s) 211, 221, 270, 406
Hpy188I TCNGA 5 cut(s) 148, 171, 176, 190, 232
Hpy8I GTNNAC 4 cut(s) 211, 221, 270, 406
HpyAV CCTTC 2 cut(s) 176, 232
HpyCH4III ACNGT 2 cut(s) 274, 410
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 32, 52, 137, 302
HpyF3I CTNAG 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 6 cut(s) 139, 166, 201, 353, 378, 380
Lsp1109I GCAGC 2 cut(s) 17, 59
LweI GCATC 2 cut(s) 188, 241
MaeI CTAG 1 cut(s) 383
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 173
MbiI CCGCTC 1 cut(s) 68
MboI GATC 1 cut(s) 171
MboII GAAGA 5 cut(s) 105, 177, 203, 309, 412
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 324, 340
MlyI GAGTC 1 cut(s) 158
MseI TTAA 2 cut(s) 434, 448
MslI CAYNNNNRTG 1 cut(s) 121
MspR9I CCNGG 2 cut(s) 154, 368
MssI GTTTAAAC 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 2 cut(s) 154, 368
MwoI GCNNNNNNNGC 5 cut(s) 11, 32, 52, 137, 302
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 171
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 121
PctI GAATGC 1 cut(s) 160
PfoI TCCNGGA 2 cut(s) 152, 366
PkrI GCNGC 3 cut(s) 7, 28, 74
PleI GAGTC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 50
PmeI GTTTAAAC 1 cut(s) 435
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 364
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 2 cut(s) 152, 366
PspCI CACGTG 1 cut(s) 50
PspGI CCWGG 2 cut(s) 152, 366
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 364
PspPPI RGGWCCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 2 cut(s) 434, 448
SatI GCNGC 3 cut(s) 6, 27, 73
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 364
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 154, 368
SduI GDGCHC 1 cut(s) 57
SetI ASST 8 cut(s) 52, 93, 100, 142, 292, 366, 417, 441
SfaNI GCATC 2 cut(s) 188, 241
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 2 cut(s) 324, 340
SsiI CCGC 4 cut(s) 26, 33, 66, 78
SspMI CTAG 1 cut(s) 383
StyD4I CCNGG 2 cut(s) 152, 366
StyI CCWWGG 2 cut(s) 21, 81
TaaI ACNGT 2 cut(s) 274, 410
TaiI ACGT 1 cut(s) 52
TasI AATT 2 cut(s) 324, 340
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 434, 448
Tru9I TTAA 2 cut(s) 434, 448
TscAI CASTG 3 cut(s) 220, 351, 357
TseI GCWGC 2 cut(s) 5, 72
TspRI CASTG 3 cut(s) 220, 351, 357
VpaK11BI GGWCC 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.