Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005869

Physical Location & Seq

Genomic Coordinates Reverse (-)

11156788 .. 11159186

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCAGCGACAGCCTCATCCATGGCGGCCACCGCCGTCTTCATACCACGTTTTCCCATCAAACCCACCCGCTGCTCCGCTTTGCCTTACCTCCCTCCTCGCCTCTCCTCCCCTTCTTCCTTCCCTCTTAAATCCTTCTCAGGGTCCCGGAGGATTTCTCTTCAGGTCAGAGCTTCATCTTCAGAAGAGACATCCACATCCGTCGACACTAATGAACTTATATCAGACTTGAAGGAGAAGTGGGATGCAGTTGAAAACAAGTCTACAGTACTTCTGTATGGAGGTGGGGCGATAGTCGCTGTGTGGTTGTCCTCAATAGTTGTTGGTGCCGTCAATTCAGTGCCACTTCTTCCAAAGGTCCTGGAGTTGGTAGGGCTAGGATACACTGGATGGTTTGTCTACCGTTACCTACTCTTCAAGTCAAGCAGAAAAGAACTAGCTACAGACATTGAGGCACTGAAGAAGAAGATTGCCGGAACTGAATCGATCCGTATTACGAGGTGGCAAACGTCAGGCACATTTATCGTCGACATCCTTTCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

182

Amino Acids

19.72

Weight (kDa)

9.67

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01150 AT4G01150
fragaria_vesca	FvH4_7g15760 FvH4_7g15760 FvH4_7g15760 FvH4_7g15760
malus_domestica	MD01G1074400.v1.1 MD07G1143300.v1.1
prunus_persica	Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1 Prupe.2G182400_v2.0.a1
pyrus_communis	pycom01g10350 pycom07g14200
rosa_chinensis	RchiOBHm_Chr1g0358531 RchiOBHm_Chr5g0044891
rosa_laevigata	RLG00000027954 RLG00000034304
rosa_multiflora	Rmu_sc0001609.1_g000005 Rmu_sc0020854.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297830
rosa_rugosa	Rorug01G0262400
rosa_samantha	Rh1AG277100 Rh1BG243400 Rh1CG260600 Rh1DG271700
rosa_wichuraiana	Rw1G024630 Rw5G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccI	GTMKAC	4 cut(s)	204, 263, 399, 528
AciI	CCGC	4 cut(s)	26, 33, 70, 78
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	3 cut(s)	146, 165, 479
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	141, 367
AgsI	TTSAA	3 cut(s)	232, 254, 418
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	2 cut(s)	173, 440
AluI	AGCT	2 cut(s)	173, 440
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	5, 72
AspS9I	GGNCC	2 cut(s)	144, 358
AsuC2I	CCSGG	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	144, 358
BanI	GGYRCC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	17, 59
BccI	CCATC	2 cut(s)	65, 384
BceAI	ACGGC	2 cut(s)	20, 314
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	1 cut(s)	362
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	377, 437
BfmI	CTRYAG	2 cut(s)	264, 441
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	6, 27, 73
BlsI	GCNGC	3 cut(s)	7, 28, 74
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	148, 362
Bme18I	GGWCC	2 cut(s)	144, 358
BmgT120I	GGNCC	2 cut(s)	144, 358
BmiI	GGNNCC	3 cut(s)	145, 146, 328
BmrFI	CCNGG	2 cut(s)	148, 362
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	148
Bsa29I	ATCGAT	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 367
Bse1I	ACTGG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	362
BseCI	ATCGAT	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	6 cut(s)	17, 191, 197, 250, 395, 531
BseLI	CCNNNNNNNGG	2 cut(s)	141, 367
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	2 cut(s)	87, 97
BseXI	GCAGC	2 cut(s)	17, 59
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	148, 474
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	141, 367
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	486
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	4 cut(s)	26, 33, 70, 78
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	152
BspDI	ATCGAT	1 cut(s)	485
BspLI	GGNNCC	3 cut(s)	145, 146, 328
BspPI	GGATC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	268, 404
Bst6I	CTCTTC	3 cut(s)	165, 180, 419
BstDEI	CTNAG	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	6 cut(s)	17, 191, 197, 250, 395, 531
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 32, 296
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	146, 360
BstSFI	CTRYAG	2 cut(s)	264, 441
BstV1I	GCAGC	2 cut(s)	17, 59
BstV2I	GAAGAC	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	29
BsuTUI	ATCGAT	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	6 cut(s)	17, 191, 197, 250, 395, 531
BtsIMutI	CAGTG	3 cut(s)	345, 384, 455
Cfr13I	GGNCC	2 cut(s)	144, 358
ClaI	ATCGAT	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	5 cut(s)	14, 29, 173, 376, 440
CviKI_1	RGCY	5 cut(s)	14, 29, 173, 376, 440
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	3 cut(s)	165, 180, 419
EarI	CTCTTC	3 cut(s)	165, 180, 419
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	144, 358
Eco57I	CTGAAG	3 cut(s)	146, 165, 479
EcoO109I	RGGNCCY	2 cut(s)	144, 358
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	25
FaiI	YATR	4 cut(s)	23, 44, 221, 279
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	21
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	4 cut(s)	204, 263, 399, 528
Fnu4HI	GCNGC	3 cut(s)	6, 27, 73
FokI	GGATG	6 cut(s)	4, 178, 184, 257, 402, 518
Fsp4HI	GCNGC	3 cut(s)	6, 27, 73
FspBI	CTAG	2 cut(s)	377, 437
GluI	GCNGC	3 cut(s)	6, 27, 73
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	148, 474
Hin1II	CATG	1 cut(s)	25
HincII	GTYRAC	2 cut(s)	205, 529
HindII	GTYRAC	2 cut(s)	205, 529
HinfI	GANTC	1 cut(s)	482
HpaII	CCGG	2 cut(s)	148, 474
Hpy166II	GTNNAC	4 cut(s)	205, 264, 400, 529
Hpy188I	TCNGA	3 cut(s)	170, 184, 226
Hpy8I	GTNNAC	4 cut(s)	205, 264, 400, 529
Hpy99I	CGWCG	2 cut(s)	206, 530
HpyAV	CCTTC	4 cut(s)	123, 130, 145, 226
HpyCH4III	ACNGT	2 cut(s)	268, 404
HpyCH4IV	ACGT	2 cut(s)	49, 509
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 32, 296
HpyF3I	CTNAG	1 cut(s)	139
HpySE526I	ACGT	2 cut(s)	49, 509
Hsp92II	CATG	1 cut(s)	25
KflI	GGGWCCC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	8 cut(s)	126, 149, 161, 347, 372, 374, 487, 498
Lsp1109I	GCAGC	2 cut(s)	17, 59
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	377, 437
MaeII	ACGT	2 cut(s)	49, 509
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MluCI	AATT	1 cut(s)	334
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	2 cut(s)	148, 474
MspR9I	CCNGG	2 cut(s)	148, 362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	3 cut(s)	11, 32, 296
NciI	CCSGG	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	3 cut(s)	145, 146, 328
PfeI	GAWTC	1 cut(s)	482
PfoI	TCCNGGA	2 cut(s)	146, 360
PkrI	GCNGC	3 cut(s)	7, 28, 74
PpuMI	RGGWCCY	2 cut(s)	144, 358
Psp5II	RGGWCCY	2 cut(s)	144, 358
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	145, 146, 328
PspPI	GGNCC	2 cut(s)	144, 358
PspPPI	RGGWCCY	2 cut(s)	144, 358
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SalI	GTCGAC	2 cut(s)	203, 527
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	6, 27, 73
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	2 cut(s)	144, 358
ScaI	AGTACT	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	148, 362
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	2 cut(s)	264, 441
SinI	GGWCC	2 cut(s)	144, 358
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	4 cut(s)	26, 33, 70, 78
SspMI	CTAG	2 cut(s)	377, 437
StyD4I	CCNGG	2 cut(s)	146, 360
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	268, 404
TaiI	ACGT	2 cut(s)	52, 512
TaqI	TCGA	3 cut(s)	204, 485, 528
TasI	AATT	1 cut(s)	334
TatI	WGTACW	1 cut(s)	268
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	3 cut(s)	345, 391, 462
TseI	GCWGC	2 cut(s)	5, 72
TspDTI	ATGAA	3 cut(s)	31, 165, 228
TspGWI	ACGGA	2 cut(s)	190, 479
TspRI	CASTG	3 cut(s)	345, 391, 462
VpaK11BI	GGWCC	2 cut(s)	144, 358
XmiI	GTMKAC	4 cut(s)	204, 263, 399, 528
XspI	CTAG	2 cut(s)	377, 437
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.