Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006578

Physical Location & Seq

Genomic Coordinates Reverse (-)

504135 .. 506403

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAGCTGAGAGCCACGGTGGAGAATCGAATTCGATACTCTACAAAACACATTAAACACTTGCCACCTGGCTCAATCACTGAGTTTGATTGGAAGGATTACTGTCCCGTTGGTTTCGGACTTATTCAAGAACTTGAGGGTATAGATCATGATGATTACTTGCTATCCATTTGCACTGATGAGACTCTCAAGAAGATTTCTTCTGGGAAAATTGGAAATGTCTTTCATATTTCCAATGATAACCGTTTTCTCATCAAGATTCTTCGAAAATCCGAAATTAAGGTGACACTAGAGATGCTTCCACGTTACTACAGACATATTAATTATCACAGATCATCACTATTCACAAGGATTTTTGGTGCTCATTCTGTGAAGCCTCTTGGAGGTGTTAAGACATATTTTGCTGTGATGTCAAACATGCTACATTCAACGATCTTTGTGAACAAGCTCTATGATCTTAAAGGTTCTCCGAAAGGTCGATCTAACAAGAAAATTGAAGTGAGAAACACCACTGTTTTGAAGGACATCGATTTCGATTTCTGTTTCTACGTTGATCCTTTGGCGAGACAACGCATCATCAAGCAAACAAAGCTAGATTGCGAGCTTTTGGAAGAAGAAGGTATAATGGATTATAGCTTATTGGTTGGTTTACAATCTAAAGGCTCATGTCAAGGTTCACTTGATGGATTGAACCCGGTTTACGGTAGCTTCGCACCTCCAAGCTCGTTCAAAAGCAATAGCACAAAGTCGATGAAGACGGCTTCTAGTTCTCCTGATAGATCTTCTGTAGCAATGTATTCATGCTCTCCCGATAGAGATTCAGTCGAAAACGAAATGTCAATGACTATACAATCAGTGACAAGCAATAGCGCAAGCTCAGAAACAAATATATTAGCCACAACACTCAGTGACCTCTTTCACAATAGCTCAAATATCAATTTTGGGATGAAGATTCCAGCGAGGGCACGGCGAGTGACGAGAGAAACCGGAGAAGAAGAATGGTACAATGTTGTTTTGTATATAGGGATAGTAGACACATTTCAAGACTATGGTATGAAGAAACGCATAGAACATTGTTACAAATCCATTCAATATAACTCAAACTCAATCTCAACCGTCCATCCTAAGATCTACTCTTCTAGATTCCAAGACTTTGTCTCCAACATCTTCCTACCTCACGACGATGATCTCTCTTCGAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

PIP5K

Protein Analysis

401

Amino Acids

45.66

Weight (kDa)

8.49

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	58 - 389	1.5e-75	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01460 AT4G01190 AT4G01190 AT4G01190
fragaria_vesca	FvH4_7g15740 FvH4_7g15740 FvH4_7g15740 FvH4_7g15740
malus_domestica	MD01G1073900.v1.1 MD07G1142600.v1.1
prunus_persica	Prupe.2G182000_v2.0.a1 Prupe.2G182000_v2.0.a1
pyrus_communis	pycom01g10310
rosa_chinensis	RchiOBHm_Chr1g0358451
rosa_laevigata	RLG00000027957
rosa_multiflora	Rmu_co8148590.1_g000001 Rmu_sc0008220.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297910
rosa_rugosa	Rorug01G0262000 Rorug01G0262100 Rorug01G0262200
rosa_samantha	Rh1AG276600 Rh1BG243100 Rh1CG260200 Rh1DG271400
rosa_wichuraiana	Rw1G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1032
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	30
AdeI	CACNNNGTG	1 cut(s)	908
AfaI	GTAC	1 cut(s)	1004
AfiI	CCNNNNNNNGG	2 cut(s)	383, 701
AgsI	TTSAA	8 cut(s)	128, 429, 497, 520, 691, 730, 1043, 1091
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	9 cut(s)	7, 448, 592, 604, 636, 708, 723, 876, 927
AluI	AGCT	9 cut(s)	7, 448, 592, 604, 636, 708, 723, 876, 927
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	3 cut(s)	176, 559, 1162
AlwI	GGATC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	30
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AseI	ATTAAT	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	872
AsuC2I	CCSGG	1 cut(s)	695
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	2 cut(s)	265, 1196
BaeGI	GKGCMC	1 cut(s)	967
BbsI	GAAGAC	1 cut(s)	761
Bbv12I	GWGCWC	1 cut(s)	364
BccI	CCATC	2 cut(s)	677, 1128
BceAI	ACGGC	2 cut(s)	774, 983
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	695
BcoDI	GTCTC	3 cut(s)	176, 559, 1162
BfaI	CTAG	4 cut(s)	290, 593, 765, 1140
BfmI	CTRYAG	2 cut(s)	310, 786
BglII	AGATCT	2 cut(s)	779, 1128
Bme1390I	CCNGG	2 cut(s)	69, 695
BmrFI	CCNGG	2 cut(s)	69, 695
BmsI	GCATC	2 cut(s)	285, 582
BpiI	GAAGAC	1 cut(s)	761
Bpu14I	TTCGAA	2 cut(s)	265, 1196
BpuEI	CTTGAG	2 cut(s)	155, 173
BpuMI	CCSGG	1 cut(s)	695
Bsa29I	ATCGAT	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	986
BsaXI	ACNNNNNCTCC	2 cut(s)	1142, 1172
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 701
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	951, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	383, 701
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	3 cut(s)	72, 891, 919
BseSI	GKGCMC	1 cut(s)	967
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	695, 987
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	383, 701
BsmAI	GTCTC	3 cut(s)	176, 559, 1162
BsmFI	GGGAC	1 cut(s)	90
Bsp119I	TTCGAA	2 cut(s)	265, 1196
Bsp1286I	GDGCHC	2 cut(s)	364, 967
Bsp143I	GATC	9 cut(s)	145, 332, 432, 454, 479, 553, 779, 1128, 1186
BspCNI	CTCAG	3 cut(s)	73, 890, 918
BspDI	ATCGAT	1 cut(s)	528
BspHI	TCATGA	1 cut(s)	148
BspPI	GGATC	1 cut(s)	548
BspT104I	TTCGAA	2 cut(s)	265, 1196
BsrDI	GCAATG	1 cut(s)	798
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	9 cut(s)	145, 332, 432, 454, 479, 553, 779, 1128, 1186
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	6 cut(s)	19, 104, 245, 514, 704, 1117
Bst6I	CTCTTC	2 cut(s)	1141, 1198
BstBI	TTCGAA	2 cut(s)	265, 1196
BstC8I	GCNNGC	2 cut(s)	602, 874
BstDEI	CTNAG	5 cut(s)	8, 81, 877, 905, 1125
BstDSI	CCRYGG	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	951, 1120
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	9 cut(s)	148, 335, 435, 457, 482, 556, 782, 1131, 1189
BstMAI	GTCTC	3 cut(s)	176, 559, 1162
BstMBI	GATC	9 cut(s)	145, 332, 432, 454, 479, 553, 779, 1128, 1186
BstMWI	GCNNNNNNNGC	1 cut(s)	589
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	67, 693
BstSFI	CTRYAG	2 cut(s)	310, 786
BstSLI	GKGCMC	1 cut(s)	967
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	2 cut(s)	779, 1128
BstYI	RGATCY	2 cut(s)	779, 1128
Bsu15I	ATCGAT	1 cut(s)	528
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	951, 1120
BtsIMutI	CAGTG	5 cut(s)	78, 174, 510, 861, 913
Cac8I	GCNNGC	2 cut(s)	602, 874
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	872
ClaI	ATCGAT	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	1003
CviAII	CATG	4 cut(s)	149, 418, 666, 801
CviQI	GTAC	1 cut(s)	1003
DdeI	CTNAG	5 cut(s)	8, 81, 877, 905, 1125
DpnI	GATC	9 cut(s)	147, 334, 434, 456, 481, 555, 781, 1130, 1188
DpnII	GATC	9 cut(s)	145, 332, 432, 454, 479, 553, 779, 1128, 1186
DraIII	CACNNNGTG	1 cut(s)	908
Eam1104I	CTCTTC	2 cut(s)	1141, 1198
EarI	CTCTTC	2 cut(s)	1141, 1198
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	4 cut(s)	152, 421, 669, 804
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	4 cut(s)	148, 417, 665, 800
FblI	GTMKAC	1 cut(s)	1032
FokI	GGATG	2 cut(s)	958, 1107
FspBI	CTAG	4 cut(s)	290, 593, 765, 1140
GlaI	GCGC	1 cut(s)	871
HapII	CCGG	2 cut(s)	695, 987
HhaI	GCGC	1 cut(s)	872
Hin1II	CATG	4 cut(s)	152, 421, 669, 804
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HinfI	GANTC	6 cut(s)	25, 184, 259, 818, 952, 1143
HpaII	CCGG	2 cut(s)	695, 987
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	5 cut(s)	442, 650, 677, 700, 1033
Hpy188I	TCNGA	4 cut(s)	119, 274, 471, 880
Hpy188III	TCNNGA	9 cut(s)	128, 149, 190, 256, 773, 809, 1043, 1140, 1178
Hpy8I	GTNNAC	5 cut(s)	442, 650, 677, 700, 1033
Hpy99I	CGWCG	1 cut(s)	1184
HpyAV	CCTTC	3 cut(s)	88, 514, 611
HpyCH4III	ACNGT	6 cut(s)	19, 104, 245, 514, 704, 1117
HpyCH4IV	ACGT	2 cut(s)	304, 549
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	589
HpyF3I	CTNAG	5 cut(s)	8, 81, 877, 905, 1125
HpySE526I	ACGT	2 cut(s)	304, 549
Hsp92II	CATG	4 cut(s)	152, 421, 669, 804
HspAI	GCGC	1 cut(s)	870
Kzo9I	GATC	9 cut(s)	145, 332, 432, 454, 479, 553, 779, 1128, 1186
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	54, 81, 189, 708, 786, 969, 1000
LweI	GCATC	2 cut(s)	285, 582
MaeI	CTAG	4 cut(s)	290, 593, 765, 1140
MaeII	ACGT	2 cut(s)	304, 549
MaeIII	GTNAC	6 cut(s)	283, 305, 856, 908, 973, 1076
MalI	GATC	9 cut(s)	147, 334, 434, 456, 481, 555, 781, 1130, 1188
MboI	GATC	9 cut(s)	145, 332, 432, 454, 479, 553, 779, 1128, 1186
MflI	RGATCY	2 cut(s)	779, 1128
MhlI	GDGCHC	2 cut(s)	364, 967
MluCI	AATT	6 cut(s)	30, 210, 276, 322, 492, 937
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	1185
MnlI	CCTC	7 cut(s)	130, 377, 387, 726, 923, 954, 1185
MseI	TTAA	5 cut(s)	54, 279, 321, 390, 459
MslI	CAYNNNNRTG	1 cut(s)	1182
MspI	CCGG	2 cut(s)	695, 987
MspR9I	CCNGG	2 cut(s)	69, 695
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	589
NciI	CCSGG	1 cut(s)	695
NdeII	GATC	9 cut(s)	145, 332, 432, 454, 479, 553, 779, 1128, 1186
NlaIII	CATG	4 cut(s)	152, 421, 669, 804
NmuCI	GTSAC	4 cut(s)	283, 856, 908, 973
NspI	RCATGY	1 cut(s)	421
NspV	TTCGAA	2 cut(s)	265, 1196
PagI	TCATGA	1 cut(s)	148
PfeI	GAWTC	5 cut(s)	25, 259, 818, 952, 1143
PflFI	GACNNNGTC	1 cut(s)	1154
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PshBI	ATTAAT	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PsrI	GAACNNNNNNTAC	2 cut(s)	683, 715
PsuI	RGATCY	2 cut(s)	779, 1128
PsyI	GACNNNGTC	1 cut(s)	1154
RsaI	GTAC	1 cut(s)	1004
RsaNI	GTAC	1 cut(s)	1003
RseI	CAYNNNNRTG	1 cut(s)	1182
SaqAI	TTAA	5 cut(s)	54, 279, 321, 390, 459
Sau3AI	GATC	9 cut(s)	145, 332, 432, 454, 479, 553, 779, 1128, 1186
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	69, 695
SduI	GDGCHC	2 cut(s)	364, 967
SfaNI	GCATC	2 cut(s)	285, 582
SfcI	CTRYAG	2 cut(s)	310, 786
SfuI	TTCGAA	2 cut(s)	265, 1196
SmiMI	CAYNNNNRTG	1 cut(s)	1182
SmlI	CTYRAG	2 cut(s)	134, 188
SmoI	CTYRAG	2 cut(s)	134, 188
Sse9I	AATT	6 cut(s)	30, 210, 276, 322, 492, 937
SspI	AATATT	1 cut(s)	1202
SspMI	CTAG	4 cut(s)	290, 593, 765, 1140
StyD4I	CCNGG	2 cut(s)	67, 693
TaaI	ACNGT	6 cut(s)	19, 104, 245, 514, 704, 1117
TaiI	ACGT	2 cut(s)	307, 552
TaqI	TCGA	9 cut(s)	28, 34, 265, 478, 528, 534, 749, 825, 1196
TasI	AATT	6 cut(s)	30, 210, 276, 322, 492, 937
TfiI	GAWTC	5 cut(s)	25, 259, 818, 952, 1143
Tru1I	TTAA	5 cut(s)	54, 279, 321, 390, 459
Tru9I	TTAA	5 cut(s)	54, 279, 321, 390, 459
TscAI	CASTG	5 cut(s)	85, 181, 517, 861, 913
TseFI	GTSAC	4 cut(s)	283, 856, 908, 973
Tsp45I	GTSAC	4 cut(s)	283, 856, 908, 973
TspDTI	ATGAA	5 cut(s)	215, 767, 789, 962, 1070
TspRI	CASTG	5 cut(s)	85, 181, 517, 861, 913
Tth111I	GACNNNGTC	1 cut(s)	1154
VspI	ATTAAT	1 cut(s)	321
XagI	CCTNNNNNAGG	1 cut(s)	381
XapI	RAATTY	1 cut(s)	30
XbaI	TCTAGA	1 cut(s)	1139
XceI	RCATGY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	1032
XspI	CTAG	4 cut(s)	290, 593, 765, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.