Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006578

Physical Location & Seq

Genomic Coordinates Forward (+)

20737192 .. 20741902

Gene Structure 4711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1142600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAATGACTTCGAATGGAAACATTACAGTCCTGCAGTTTTCAGACGTTTGCTGGAGCTTGACAGTATTAGTTACGACGACTACCTGCTTACAATATGTGGAGATGACACTCTAAGGGAGGTTTCTTTACCAGGAAGACATGGTAGGGTGTATATATTGCCTGGTGACAAACGATTCATGATTAAAACGCTGCGGAAATCAGAAAAGAAGGTGTACCTAGAAATGCTTCCAAATTATTACCGTCATGTTAAGAAGTATGGCGCCTCACTTTTGAAAAGACTGTATGGACTTCATGTTATCAGGCCACCAGGAGGTATCAAGGTTTACTTTGCCGTTTGGGCAACTGTAATGCCGTTAGAACTATGCTTATATAAGTGCTATGATCTCAAAGGGTCTTCAGTAGGCAGAACCTGCAACAAATCACAAGTTCACGACAGAGCCATTCTCAAGGATCTGGATTTTGACTTTTGCTTTTACCTTGACCCATTGGTCCGACATCGGCTCTTAGCGCAAATCAAGTATGACTGCGAGTTTTTGGAAGGCGAGGGCATCATGGATTATAGTTTATTGCTTGGTATACACCTAGATACTTCACGTTCATTGGAAGGTTCAAATGATAAAAAAAATTCCGGAAGTTTTAATGCCAAAAGGCAAACGGATGATACTTCAGAAGACGATGAAACCTCATCAGAGTTAACTCTTGCCGATATATGCGATCTAATTGACAGGCCTGATTTTAAATTGGGTGACAGACTGCCAGCACGAGCTGTCCGAACCTGCAGGAATGAAATGGAGAGTAGATCATATAGCTCCAGCAGAACACAAGAATGCTTCAATGTTCTTTTATTCTTTGGAATAATAGATTTTTGTCAGAATTACAACATGAAGAAACGCATTGAGCATGCTTGCAAGGCAATGAAATACGACTCAAAGTCCATCAAAACTGTGAACCCCAAAGCCTACTCTTCTCGCTTTCAGGAGTTTCTGAGCAAAGTATTTCTGCCCGAAGAGTCGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

PIP5K

Protein Analysis

340

Amino Acids

39.4

Weight (kDa)

8.18

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	32 - 331	5.9e-76	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01460 AT4G01190 AT4G01190 AT4G01190
fragaria_vesca	FvH4_7g15740 FvH4_7g15740 FvH4_7g15740 FvH4_7g15740
malus_domestica	MD01G1073900.v1.1 MD07G1142600.v1.1
prunus_persica	Prupe.2G182000_v2.0.a1 Prupe.2G182000_v2.0.a1
pyrus_communis	pycom01g10310
rosa_chinensis	RchiOBHm_Chr1g0358451
rosa_laevigata	RLG00000027957
rosa_multiflora	Rmu_co8148590.1_g000001 Rmu_sc0008220.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297910
rosa_rugosa	Rorug01G0262000 Rorug01G0262100 Rorug01G0262200
rosa_samantha	Rh1AG276600 Rh1BG243100 Rh1CG260200 Rh1DG271400
rosa_wichuraiana	Rw1G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	488
Acc36I	ACCTGC	3 cut(s)	93, 419, 785
AccB1I	GGYRCC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	577
AccIII	TCCGGA	1 cut(s)	629
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	2 cut(s)	381, 651
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	274, 612, 835
AhdI	GACNNNNNGTC	1 cut(s)	931
AjnI	CCWGG	3 cut(s)	130, 160, 307
AluBI	AGCT	3 cut(s)	58, 767, 810
AluI	AGCT	3 cut(s)	58, 767, 810
AlwI	GGATC	1 cut(s)	459
AlwNI	CAGNNNCTG	1 cut(s)	411
Aor13HI	TCCGGA	1 cut(s)	629
AoxI	GGCC	2 cut(s)	302, 728
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	625
Asp700I	GAANNNNTTC	2 cut(s)	8, 225
AspLEI	GCGC	2 cut(s)	263, 511
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	176, 758
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	762
BbsI	GAAGAC	3 cut(s)	142, 387, 678
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	944
BceAI	ACGGC	2 cut(s)	317, 337
BciT130I	CCWGG	3 cut(s)	132, 162, 309
BfaI	CTAG	3 cut(s)	218, 584, 1018
BfmI	CTRYAG	2 cut(s)	33, 778
BfoI	RGCGCY	1 cut(s)	264
BfuAI	ACCTGC	3 cut(s)	93, 419, 785
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	192
Bme1390I	CCNGG	3 cut(s)	132, 162, 309
Bme18I	GGWCC	1 cut(s)	490
BmeRI	GACNNNNNGTC	1 cut(s)	931
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	3 cut(s)	132, 162, 309
BmsI	GCATC	1 cut(s)	558
BpiI	GAAGAC	3 cut(s)	142, 387, 678
BplI	GAGNNNNNCTC	2 cut(s)	429, 461
BpmI	CTGGAG	2 cut(s)	74, 796
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	629
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	921
BseAI	TCCGGA	1 cut(s)	629
BseBI	CCWGG	3 cut(s)	132, 162, 309
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	977
BseXI	GCAGC	1 cut(s)	177
BshFI	GGCC	2 cut(s)	304, 730
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	2 cut(s)	304, 730
Bsp119I	TTCGAA	1 cut(s)	12
Bsp13I	TCCGGA	1 cut(s)	629
Bsp143I	GATC	4 cut(s)	382, 451, 715, 800
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	304, 730
BspCNI	CTCAG	1 cut(s)	978
BspEI	TCCGGA	1 cut(s)	629
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	2 cut(s)	37, 782
BspMI	ACCTGC	3 cut(s)	93, 419, 785
BspPI	GGATC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	921
BssMI	GATC	4 cut(s)	382, 451, 715, 800
BssNAI	GTATAC	1 cut(s)	578
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	762
Bst1107I	GTATAC	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	3 cut(s)	132, 162, 309
Bst4CI	ACNGT	6 cut(s)	29, 65, 242, 282, 346, 946
Bst6I	CTCTTC	2 cut(s)	970, 1002
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	759, 903, 907
BstDEI	CTNAG	3 cut(s)	113, 505, 986
BstF5I	GGATG	1 cut(s)	664
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	263, 511
BstKTI	GATC	4 cut(s)	385, 454, 718, 803
BstMBI	GATC	4 cut(s)	382, 451, 715, 800
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 411, 508, 911
BstNI	CCWGG	3 cut(s)	132, 162, 309
BstNSI	RCATGY	1 cut(s)	905
BstSCI	CCNGG	3 cut(s)	130, 160, 307
BstSFI	CTRYAG	2 cut(s)	33, 778
BstV1I	GCAGC	1 cut(s)	177
BstV2I	GAAGAC	3 cut(s)	142, 387, 678
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BstZ17I	GTATAC	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	304, 730
BtsCI	GGATG	1 cut(s)	664
BveI	ACCTGC	3 cut(s)	93, 419, 785
Cac8I	GCNNGC	3 cut(s)	759, 903, 907
CaiI	CAGNNNCTG	1 cut(s)	411
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	2 cut(s)	263, 511
Cfr13I	GGNCC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	7 cut(s)	140, 178, 245, 293, 553, 883, 902
CviJI	RGCY	8 cut(s)	58, 304, 440, 502, 730, 767, 810, 959
CviKI_1	RGCY	8 cut(s)	58, 304, 440, 502, 730, 767, 810, 959
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	113, 505, 986
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	4 cut(s)	384, 453, 717, 802
DpnII	GATC	4 cut(s)	382, 451, 715, 800
DraI	TTTAAA	1 cut(s)	739
DrdI	GACNNNNNNGTC	1 cut(s)	488
DriI	GACNNNNNGTC	1 cut(s)	931
DseDI	GACNNNNNNGTC	1 cut(s)	488
Eam1104I	CTCTTC	2 cut(s)	970, 1002
Eam1105I	GACNNNNNGTC	1 cut(s)	931
EarI	CTCTTC	2 cut(s)	970, 1002
Eco147I	AGGCCT	1 cut(s)	730
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	381, 651
EcoRII	CCWGG	3 cut(s)	130, 160, 307
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
FaeI	CATG	7 cut(s)	143, 181, 248, 296, 556, 886, 905
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	7 cut(s)	139, 177, 244, 292, 552, 882, 901
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	1 cut(s)	191
FspBI	CTAG	3 cut(s)	218, 584, 1018
GlaI	GCGC	2 cut(s)	262, 510
GluI	GCNGC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	74, 796
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	304, 730
HapII	CCGG	1 cut(s)	630
HhaI	GCGC	2 cut(s)	263, 511
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	7 cut(s)	143, 181, 248, 296, 556, 886, 905
Hin6I	GCGC	2 cut(s)	261, 509
HinP1I	GCGC	2 cut(s)	261, 509
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	3 cut(s)	174, 926, 1010
HpaI	GTTAAC	1 cut(s)	696
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	2 cut(s)	176, 758
Hpy166II	GTNNAC	6 cut(s)	214, 325, 430, 578, 696, 949
Hpy188I	TCNGA	9 cut(s)	44, 202, 494, 670, 691, 773, 873, 987, 1015
Hpy188III	TCNNGA	5 cut(s)	178, 431, 455, 630, 977
Hpy8I	GTNNAC	6 cut(s)	214, 325, 430, 578, 696, 949
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	202, 533, 599
HpyCH4III	ACNGT	6 cut(s)	29, 65, 242, 282, 346, 946
HpyCH4IV	ACGT	2 cut(s)	46, 595
HpyCH4V	TGCA	4 cut(s)	35, 414, 780, 909
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 411, 508, 911
HpyF3I	CTNAG	3 cut(s)	113, 505, 986
HpySE526I	ACGT	2 cut(s)	46, 595
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	7 cut(s)	143, 181, 248, 296, 556, 886, 905
HspAI	GCGC	2 cut(s)	261, 509
KasI	GGCGCC	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	629
KspAI	GTTAAC	1 cut(s)	696
Kzo9I	GATC	4 cut(s)	382, 451, 715, 800
LmnI	GCTCC	2 cut(s)	55, 815
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	3 cut(s)	218, 584, 1018
MaeII	ACGT	2 cut(s)	46, 595
MaeIII	GTNAC	3 cut(s)	71, 164, 746
MalI	GATC	4 cut(s)	384, 453, 717, 802
MboI	GATC	4 cut(s)	382, 451, 715, 800
MboII	GAAGA	6 cut(s)	147, 387, 683, 898, 957, 1019
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	5 cut(s)	232, 625, 720, 740, 874
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	920, 1019
MmeI	TCCRAC	2 cut(s)	517, 993
MnlI	CCTC	5 cut(s)	112, 274, 305, 538, 694
MroI	TCCGGA	1 cut(s)	629
MroXI	GAANNNNTTC	2 cut(s)	8, 225
MseI	TTAA	5 cut(s)	183, 249, 639, 695, 738
MslI	CAYNNNNRTG	1 cut(s)	826
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	3 cut(s)	132, 162, 309
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	3 cut(s)	132, 162, 309
MwoI	GCNNNNNNNGC	4 cut(s)	338, 411, 508, 911
NarI	GGCGCC	1 cut(s)	261
NdeII	GATC	4 cut(s)	382, 451, 715, 800
NlaIII	CATG	7 cut(s)	143, 181, 248, 296, 556, 886, 905
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	2 cut(s)	164, 746
NspI	RCATGY	1 cut(s)	905
NspV	TTCGAA	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	905
PagI	TCATGA	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	730
PcsI	WCGNNNNNNNCGW	1 cut(s)	769
PctI	GAATGC	1 cut(s)	833
PdmI	GAANNNNTTC	2 cut(s)	8, 225
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	192
PleI	GAGTC	2 cut(s)	920, 1018
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	2 cut(s)	920, 1018
Psp6I	CCWGG	3 cut(s)	130, 160, 307
PspGI	CCWGG	3 cut(s)	130, 160, 307
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	490
PstI	CTGCAG	2 cut(s)	37, 782
PstNI	CAGNNNCTG	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	826
SaqAI	TTAA	5 cut(s)	183, 249, 639, 695, 738
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	4 cut(s)	382, 451, 715, 800
Sau96I	GGNCC	1 cut(s)	490
SbfI	CCTGCAGG	1 cut(s)	782
SchI	GAGTC	2 cut(s)	920, 1019
ScrFI	CCNGG	3 cut(s)	132, 162, 309
SdaI	CCTGCAGG	1 cut(s)	782
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	33, 778
SfoI	GGCGCC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	826
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	905
Sse8387I	CCTGCAGG	1 cut(s)	782
Sse9I	AATT	5 cut(s)	232, 625, 720, 740, 874
SseBI	AGGCCT	1 cut(s)	730
SsiI	CCGC	1 cut(s)	193
SspDI	GGCGCC	1 cut(s)	260
SspMI	CTAG	3 cut(s)	218, 584, 1018
StuI	AGGCCT	1 cut(s)	730
StyD4I	CCNGG	3 cut(s)	130, 160, 307
TaaI	ACNGT	6 cut(s)	29, 65, 242, 282, 346, 946
TaiI	ACGT	2 cut(s)	49, 598
TaqI	TCGA	1 cut(s)	12
TasI	AATT	5 cut(s)	232, 625, 720, 740, 874
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	5 cut(s)	183, 249, 639, 695, 738
Tru9I	TTAA	5 cut(s)	183, 249, 639, 695, 738
TseFI	GTSAC	2 cut(s)	164, 746
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	2 cut(s)	164, 746
TspDTI	ATGAA	8 cut(s)	17, 166, 281, 588, 693, 801, 899, 932
TspGWI	ACGGA	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	577
XmnI	GAANNNNTTC	2 cut(s)	8, 225
XspI	CTAG	3 cut(s)	218, 584, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.